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Diffstat (limited to 'web/webqtl/networkGraph/networkGraphPageBody.py')
| -rw-r--r-- | web/webqtl/networkGraph/networkGraphPageBody.py | 697 |
1 files changed, 0 insertions, 697 deletions
diff --git a/web/webqtl/networkGraph/networkGraphPageBody.py b/web/webqtl/networkGraph/networkGraphPageBody.py deleted file mode 100644 index 22b49ccd..00000000 --- a/web/webqtl/networkGraph/networkGraphPageBody.py +++ /dev/null @@ -1,697 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -from base.templatePage import templatePage -import networkGraphUtils -from base import webqtlConfig - - -# our output representation is fairly complicated -# because we use an iframe to represent the image and the image has -# an associated image map, our output is actually three files -# 1) a networkGraphPage instance -- the URL we pass to the user -# 2) a GraphPage with the image map and the graph -- this page has to be -# there to pass the imagemap data to the browser -# 3) a PNG graph file itself - -class networkGraphPageBody(templatePage): - """ - Using the templatePage class, we build an HTML shell for the graph - that displays the parameters used to generate it and allows the - user to redraw the graph with different parameters. - - The way templatePage works, we build the page in pieces in the __init__ - method and later on use the inherited write method to render the page. - """ - - def __init__(self, fd, matrix, traits, imageHtmlName, imageName, pdfName, nodes, - edges, rawEdges, totalTime, p, graphcode, graphName, optimalNode): - - templatePage.__init__(self, fd) - - if p["printIslands"] == 0: - island = "Only nodes with edges" - else: - island = "All nodes" - - body = """ <td><P class='title'>Network Graph</P> - <Blockquote><p>The %s nodes in the - graph below show the selected traits. %s are displayed. The - %s edges between the nodes, filtered from the %s total edges and - drawn as %s, show <b>%s</b> correlation - coefficients greater than %s or less than -%s. The graph\'s - canvas is %s by %s cm, and the node - labels are drawn with a %s point font, and the edge - labels are drawn with a %s point font. Right-click or control-click - on the graph to save it to disk for further manipulation. See - below for the trait key, and graph options.</p> - """ % (nodes, island, edges, rawEdges, - p["splineName"], p["correlationName"], - p["kValue"], - p["kValue"], - p["width"], - p["height"], - p["nfontsize"], - p["cfontsize"]) - - #Generate a list of symbols for the central node selection drop-down menu - - symbolList = networkGraphUtils.generateSymbolList(traits) - - #Some of these hidden variables (CellID, CellID2, ProbesetID2, etc) exist - #to be used by the javascript functions called when a user clicks on an edge or node - - formParams = ''' - - <form name="showDatabase" action="%s%s" METHOD="POST" enctype="multipart/form-data"> - - <input type="hidden" name="filename" value="%s" /> - <input type="hidden" name="exportFilename" value="%s" /> - <input type="hidden" name="progress" value="1" /> - <input type="hidden" name="database" value="_" /> - <input type="hidden" name="database2" value="_" /> - <input type="hidden" name="ProbeSetID" value="_" /> - <input type="hidden" name="ProbeSetID2" value="_" /> - <input type="hidden" name="CellID" value="_" /> - <input type="hidden" name="CellID2" value="_" /> - <input type="hidden" name="tune" value="no" /> - <input type="hidden" name="ShowLine" value="ON"> - <input type="hidden" name="ShowStrains" value="ON"> - <input type="hidden" name="FormID" value="showDatabase" /> - <input type="hidden" name="RISet" value="%s" /> - <input type="hidden" name="incparentsf1" value="ON" /> - <input type="hidden" name="session" value="%s" /> - <input type="hidden" name="searchResult" id="searchResult" value="%s" /> - <input type="hidden" name="symbolList" id="symbolList" value="%s" /> - <input type="hidden" name="optimalNode" id="optimalNode" value="%s" /> - <input type="hidden" name="rankOrder" id="rankOrder" value="_" /> - <input type="hidden" name="X_geneID" id="X_geneID" value="_" /> - <input type="hidden" name="Y_geneID" id="Y_geneID" value="_" /> - <input type="hidden" name="X_geneSymbol" id="X_geneSymbol" value="_" /> - <input type="hidden" name="Y_geneSymbol" id="Y_geneSymbol" value="_" /> - <input type="hidden" name="TissueProbeSetFreezeId" id="TissueProbeSetFreezeId" value="1" /> - ''' % (webqtlConfig.CGIDIR, - webqtlConfig.SCRIPTFILE, - p["filename"], - graphName, - p["riset"], - p["session"], - p["searchResult"], - symbolList, - optimalNode) - - body += formParams - - #Adds the html generated by graphviz that displays the graph itself - body += graphcode - - #Initializes all form values - - selected = ["","","",""] - selected[p["whichValue"]] = "CHECKED" - - selected3 = ["",""] - if p["splines"] == "yes": - selected3[0] = "CHECKED" - else: - selected3[1] = "CHECKED" - - selected5 = ["",""] - if p["nodeshape"] == "yes": - selected5[0] = "CHECKED" - else: - selected5[1] = "CHECKED" - - selected7 = ["",""] - if p["nodelabel"] == "yes": - selected7[0] = "CHECKED" - else: - selected7[1] = "CHECKED" - - selected6 = ["",""] - if p["dispcorr"] == "yes": - selected6[0] = "CHECKED" - else: - selected6[1] = "CHECKED" - - selected4 = ["", ""] - selected4[p["printIslands"]] = "CHECKED" - - selectedExportFormat = ["",""] - if p["exportFormat"] == "xgmml": - selectedExportFormat[0] = "selected='selected'" - elif p["exportFormat"] == "plain": - selectedExportFormat[1] = "selected='selected'" - - selectedTraitType = ["",""] - if p["traitType"] == "symbol": - selectedTraitType[0] = "selected='selected'" - elif p["traitType"] == "name": - selectedTraitType[1] = "selected='selected'" - - selectedgType = ["","","","",""] - if p["gType"] == "none": - selectedgType[0] = "selected='selected'" - elif p["gType"] == "neato": - selectedgType[1] = "selected='selected'" - elif p["gType"] == "fdp": - selectedgType[2] = "selected='selected'" - elif p["gType"] == "circular": - selectedgType[3] = "selected='selected'" - elif p["gType"] == "radial": - selectedgType[4] = "selected='selected'" - - - selectedLock = ["",""] - if p["lock"] == "no": - selectedLock[0] = "selected='selected'" - elif p["lock"] == "yes": - selectedLock[1] = "selected='selected'" - - # line 1~6 - - selectedL1style = ["","","","",""] - if p["L1style"] == "": - selectedL1style[0] = "selected='selected'" - elif p["L1style"] == "bold": - selectedL1style[1] = "selected='selected'" - elif p["L1style"] == "dotted": - selectedL1style[2] = "selected='selected'" - elif p["L1style"] == "dashed": - selectedL1style[3] = "selected='selected'" - else: - selectedL1style[4] = "selected='selected'" - - selectedL2style = ["","","","",""] - if p["L2style"] == "": - selectedL2style[0] = "selected='selected'" - elif p["L2style"] == "bold": - selectedL2style[1] = "selected='selected'" - elif p["L2style"] == "dotted": - selectedL2style[2] = "selected='selected'" - elif p["L2style"] == "dashed": - selectedL2style[3] = "selected='selected'" - else: - selectedL2style[4] = "selected='selected'" - - selectedL3style = ["","","","",""] - if p["L3style"] == "": - selectedL3style[0] = "selected='selected'" - elif p["L3style"] == "bold": - selectedL3style[1] = "selected='selected'" - elif p["L3style"] == "dotted": - selectedL3style[2] = "selected='selected'" - elif p["L3style"] == "dashed": - selectedL3style[3] = "selected='selected'" - else: - selectedL3style[4] = "selected='selected'" - - selectedL4style = ["","","","",""] - if p["L4style"] == "": - selectedL4style[0] = "selected='selected'" - elif p["L4style"] == "bold": - selectedL4style[1] = "selected='selected'" - elif p["L4style"] == "dotted": - selectedL4style[2] = "selected='selected'" - elif p["L4style"] == "dashed": - selectedL4style[3] = "selected='selected'" - else: - selectedL4style[4] = "selected='selected'" - - selectedL5style = ["","","","",""] - if p["L5style"] == "": - selectedL5style[0] = "selected='selected'" - elif p["L5style"] == "bold": - selectedL5style[1] = "selected='selected'" - elif p["L5style"] == "dotted": - selectedL5style[2] = "selected='selected'" - elif p["L5style"] == "dashed": - selectedL5style[3] = "selected='selected'" - else: - selectedL5style[4] = "selected='selected'" - - selectedL6style = ["","","","",""] - if p["L6style"] == "": - selectedL6style[0] = "selected='selected'" - elif p["L6style"] == "bold": - selectedL6style[1] = "selected='selected'" - elif p["L6style"] == "dotted": - selectedL6style[2] = "selected='selected'" - elif p["L6style"] == "dashed": - selectedL6style[3] = "selected='selected'" - else: - selectedL6style[4] = "selected='selected'" - - nfontSelected = ["", "", ""] - if p["nfont"] == "arial": - nfontSelected[0] = "selected='selected'" - elif p["nfont"] == "verdana": - nfontSelected[1] = "selected='selected'" - elif p["nfont"] == "times": - nfontSelected[2] = "selected='selected'" - - cfontSelected = ["", "", ""] - if p["cfont"] == "arial": - cfontSelected[0] = "selected='selected'" - elif p["cfont"] == "verdana": - cfontSelected[1] = "selected='selected'" - elif p["cfont"] == "times": - cfontSelected[2] = "selected='selected'" - - #Writes the form part of the body - - body += ''' <br><br> - <TABLE cellspacing=0 Cellpadding=0> - <TR> - <TD class="doubleBorder"> - - <Table Cellpadding=3> - - <tr><td align="left"> - <dd> - - - - <input type="submit" name="mintmap" value=" Redraw " class="button" onClick="return sortSearchResults(this.form);" /> - - - <input TYPE="Button" class="button" value=" Info " onclick="javascript:window.open('/networkGraphInfo.html', '_blank');"> - </dd> - </td></tr> - - <tr><td align='center' colspan='2'><hr size='1'></td></tr> - <tr> - <tr align='left' valign='top'> - <td align='left'> - <select align='left' name='gType' id='gType' onchange='addTraitSelection();'> - <option value='none' %s>Select Graph Method</option> - <option value='neato' %s>Spring Model Layout (energy reduction)</option> - <option value='fdp' %s>Spring Model Layout (force reduction)</option> - <option value='circular' %s>Circular Layout</option> - <option value='radial' %s>Radial Layout</option> - </select> - <div align="left" id='nodeSelect'> </div> - </td> - </tr> - </tr> - - <tr><td align='center' colspan='2'><hr size='1'></td></tr> - - <tr><td align='center' colspan='2'> - - <table width='100%%'> - - <tr align='left'> - <td>Lock Graph Structure</td> - <td align='left'><select name='lock' id='lock' onChange="changeThreshold();"> - <option value='no' %s>No</option> - <option value='yes' %s>Yes</option> - </select></td> - </tr> - <tr><td align='left' colspan='2' nowrap='nowrap'> - Locking the graph structure allows the user to hold the position of<br> - all nodes and the length of all edges constant, letting him/her easily<br> - compare between different correlation types. Changing the value to "yes"<br> - requires the line threshold to be set to 0 in order to lock the structure.<br> - </td></tr> - </td> - </tr> - - - <tr><td align='center' colspan='2'><hr size='1'></td></tr> - - <tr><td align='center' colspan='2'> - - <table width='100%%'> - - <tr align='center'> - <td>Line Type 1:</td> - <td>-1</td> - <td>to</td> - <td>-0.7</td> - <td><Input type=radio name=colorS value="cL1" checked></TD> - <td bgcolor="%s" ID="cL1" width=20></td> - <td><select name='L1style'> - <option value='' %s>normal</option> - <option value='bold' %s>bold</option> - <option value='dotted' %s>dotted</option> - <option value='dashed' %s>dashed</option> - <option value='invis' %s>invisible</option> - </select></td> - </tr> - - <tr align='center'> - <td>Line Type 2:</td> - <td>-0.7</td> - <td>to</td> - <td>-0.5</td> - <td><Input type=radio name=colorS value="cL2"></TD> - <Td bgcolor="%s" ID="cL2" width=20></td> - <td><select name='L2style'> - <option value='' %s>normal</option> - <option value='bold' %s>bold</option> - <option value='dotted' %s>dotted</option> - <option value='dashed' %s>dashed</option> - <option value='invis' %s>invisible</option> - </select></td> - </tr> - - <tr align='center'> - <td>Line Type 3:</td> - <td>-0.5</td> - <td>to</td> - <td>0</td> - <td><Input type=radio name=colorS value="cL3"></TD> - <Td bgcolor="%s" ID="cL3" width=20></td> - <td><select name='L3style'> - <option value='' %s>normal</option> - <option value='bold' %s>bold</option> - <option value='dotted' %s>dotted</option> - <option value='dashed' %s>dashed</option> - <option value='invis' %s>invisible</option> - </select></td> - </tr> - - <tr align='center'> - <td>Line Type 4:</td> - <td>0</td> - <td>to</td> - <td>0.5</td> - <td><Input type=radio name=colorS value="cL4"></TD> - <Td bgcolor="%s" ID="cL4" width=20></td> - <td><select name='L4style'> - <option value='' %s>normal</option> - <option value='bold' %s>bold</option> - <option value='dotted' %s>dotted</option> - <option value='dashed' %s>dashed</option> - <option value='invis' %s>invisible</option> - </select></td> - </tr> - - <tr align='center'> - <td>Line Type 5:</td> - <td>0.5</td> - <td>to</td> - <td>0.7</td> - <td><Input type=radio name=colorS value="cL5"></TD> - <Td bgcolor="%s" ID="cL5" width=20></td> - <td><select name='L5style'> - <option value='' %s>normal</option> - <option value='bold' %s>bold</option> - <option value='dotted' %s>dotted</option> - <option value='dashed' %s>dashed</option> - <option value='invis' %s>invisible</option> - </select></td> - </tr> - - <tr align='center'> - <td>Line Type 6:</td> - <td>0.7</td> - <td>to</td> - <td>1</td> - <td><Input type=radio name=colorS value="cL6"></TD> - <Td bgcolor="%s" ID="cL6" width=20></td> - <td><select name='L6style'> - <option value='' %s>normal</option> - <option value='bold' %s>bold</option> - <option value='dotted' %s>dotted</option> - <option value='dashed' %s>dashed</option> - <option value='invis' %s>invisible</option> - </select></td> - </tr> - - </table> - </td> - </tr> - - <tr><td align='center' colspan='2' nowrap='nowrap'>To change colors, select Line Type then select Color below.</td></tr> - - <tr><td align='center' colspan='2'><hr size='1'></td></tr> - - <tr> - <TD align="right">Correlation Type:</TD> - <TD> - <table border='0' cellspacing='0' cellpadding='0' width='100%%'> - <tr> - <td><Input type="radio" name="whichValue" value="0" %s>Pearson</td> - <td><Input type="radio" name="whichValue" value="1" %s>Spearman</td> - <td rowspan=2 align="center"><input TYPE="Button" class="button" value="Info" onclick="javascript:window.open('/correlationAnnotation.html', '_blank');"></td> - </tr> - <tr> - <td><Input type="radio" name="whichValue" value="2" %s>Literature</td> - <td><Input type="radio" name="whichValue" value="3" %s>Tissue</td> - </tr> - </table> - </TD> - </TR> - - <TR> - <TD align="right" NOWRAP>Line Threshold:</TD> - <TD NOWRAP>Absolute values greater than <input size="5" name="kValue" id="kValue" value="%s"></TD> - </TR> - - <tr><td align='center' colspan='2'><hr size='1'></td></tr> - - <TR> - <TD align="right">Draw Nodes :</TD> - <TD NOWRAP> - <Input type="radio" name="printIslands" value="1" %s>all - <Input type="radio" name="printIslands" value="0" %s>connected only - </TD> - </TR> - - <TR> - <TD align="right">Node Shape:</TD> - <TD> - <Input type="radio" name="nodeshape" value="yes" %s>rectangle - <Input type="radio" name="nodeshape" value="no" %s>ellipse - </TD> - </TR> - - <TR> - <TD align="right">Node Label:</TD> - <TD> - <Input type="radio" name="nodelabel" value="yes" %s>trait name<br> - <Input type="radio" name="nodelabel" value="no" %s>gene symbol / marker name - </TD> - </TR> - - <tr> - <td align="right">Node Font:</td> - <TD> - <select name='nfont'> - <option value='Arial' %s>Arial</option> - <option value='Verdana' %s>Verdana</option> - <option value='Times' %s>Times</option> - </select> - </TD> - </TR> - - <tr> - <td align="right">Node Font Size:</td> - <TD><input size="5" name="nfontsize" value="%s"> point</TD> - </TR> - - <tr><td align='center' colspan='2'><hr size='1'></td></tr> - - <TR> - <TD align="right">Draw Lines:</TD> - <TD> - <Input type="radio" name="splines" value="yes" %s>curved - <Input type="radio" name="splines" value="no" %s>straight - </TD> - </TR> - - <TR> - <TD align="right">Display Correlations:</TD> - <TD> - <Input type="radio" name="dispcorr" value="no" %s>no - <Input type="radio" name="dispcorr" value="yes" %s>yes - </TD> - </tr> - - <tr> - <td align="right">Line Font:</td> - <TD> - <select name='cfont'> - <option value='Arial' %s>Arial</option> - <option value='Verdana' %s>Verdana</option> - <option value='Times' %s>Times</option> - </select> - </TD> - </TR> - - <TR> - <TD align="right" nowrap="nowrap">Line Font Size:</TD> - <TD><input size="5" name="cfontsize" value="%s"> point</TD> - </TR> - - <tr><td align='center' colspan='2'><hr size='1'></td></tr> - - <TR><TD colspan = 2> - - <Input type=hidden name=cPubName value="%s"> - <Input type=hidden name=cMicName value="%s"> - <Input type=hidden name=cGenName value="%s"> - - <Input type=hidden name=cPubColor value="%s"> - <Input type=hidden name=cMicColor value="%s"> - <Input type=hidden name=cGenColor value="%s"> - - <Input type=hidden name=cL1Name value="%s"> - <Input type=hidden name=cL2Name value="%s"> - <Input type=hidden name=cL3Name value="%s"> - <Input type=hidden name=cL4Name value="%s"> - <Input type=hidden name=cL5Name value="%s"> - <Input type=hidden name=cL6Name value="%s"> - - <Input type=hidden name=cL1Color value="%s"> - <Input type=hidden name=cL2Color value="%s"> - <Input type=hidden name=cL3Color value="%s"> - <Input type=hidden name=cL4Color value="%s"> - <Input type=hidden name=cL5Color value="%s"> - <Input type=hidden name=cL6Color value="%s"> - - <Input type=hidden id=initThreshold value="0.5"> - - <Table CellSpacing = 3> - <tr> - <TD><Input type=radio name=colorS value="cPub"> Publish </TD> - <Td bgcolor="%s" ID="cPub" width=20 height=10></td> - <TD><Input type=radio name=colorS value="cMic"> Microarray </TD> - <Td bgcolor="%s" ID="cMic" width=20 height=10></td> - <TD><Input type=radio name=colorS value="cGen"> Genotype </TD> - <Td bgcolor="%s" ID="cGen" width=20 height=10></td> - </tr> - </table> - - </td></tr> - - <tr><td align='center' colspan='2'><hr size='1'></td></tr> - - <tr> - <td colspan='2' align='center'> - <img NAME="colorPanel" src="/images/colorPanel.png" alt="colorPanel" onClick="clickHandler(event, this);"> - </TD> - </TR> - - <tr><td align='center' colspan='2'><hr size='1'></td></tr> - - <tr><td align='center' colspan='2'><input type="submit" name="mintmap" value=" Redraw Graph " class="button" onClick="return sortSearchResults(this.form);"/></td></tr> - - </TABLE> - </form></TD> - <SCRIPT type="text/javascript" SRC="/javascript/networkGraph.js"></SCRIPT> - ''' % (selectedgType[0], selectedgType[1], selectedgType[2], selectedgType[3], selectedgType[4], - selectedLock[0], selectedLock[1], - p["cL1Color"], - selectedL1style[0], selectedL1style[1], selectedL1style[2], selectedL1style[3], selectedL1style[4], - p["cL2Color"], - selectedL2style[0], selectedL2style[1], selectedL2style[2], selectedL2style[3], selectedL2style[4], - p["cL3Color"], - selectedL3style[0], selectedL3style[1], selectedL3style[2], selectedL3style[3], selectedL3style[4], - p["cL4Color"], - selectedL4style[0], selectedL4style[1], selectedL4style[2], selectedL4style[3], selectedL4style[4], - p["cL5Color"], - selectedL5style[0], selectedL5style[1], selectedL5style[2], selectedL5style[3], selectedL5style[4], - p["cL6Color"], - selectedL6style[0], selectedL6style[1], selectedL6style[2], selectedL6style[3], selectedL6style[4], - selected[0], selected[1], selected[2], selected[3], - p["kValue"], - selected4[1], selected4[0], - selected5[0], selected5[1], - selected7[0], selected7[1], - nfontSelected[0], nfontSelected[1], nfontSelected[2], - p["nfontsize"], - selected3[0], selected3[1], - selected6[1], selected6[0], - cfontSelected[0], cfontSelected[1], cfontSelected[2], - p["cfontsize"], - p["cPubName"], p["cMicName"], p["cGenName"], - p["cPubColor"], p["cMicColor"], p["cGenColor"], - p["cL1Name"], p["cL2Name"], p["cL3Name"], p["cL4Name"], p["cL5Name"], p["cL6Name"], - p["cL1Color"], p["cL2Color"], p["cL3Color"], p["cL4Color"], p["cL5Color"], p["cL6Color"], - p["cPubColor"], p["cMicColor"], p["cGenColor"]) - - #updated by NL 09-03-2010 function changeFormat() has been moved to webqtl.js and be changed to changeFormat(graphName) - #Javascript that selects the correct graph export file given what the user selects - #from the two drop-down menus - - body += ''' <td width='10'> </td> - <TD valign="top"><p>Right-click or control-click on the following - links to download this graph as a <a href="%s" class="normalsize" target="_blank">GIF file</a> or - a <a href="%s" class="normalsize" target="_blank">PDF file</a>.</p> ''' % (imageName, pdfName) - - body += ''' <p>Initial edge lengths were computed by applying an r-to-Z transform to the correlation coefficents - and then inverting the results. The graph drawing algorithm - found a configuration that minimizes the total stretching of the edges.</p> ''' - - body += ''' <p>This graph took %s seconds to generate with the <a href="http://www.research.att.com/sw/tools/graphviz/" class="normalsize" target="_blank"> - GraphViz</a> visualization toolkit from <a href="http://www.research.att.com" class="normalsize" target="_blank">AT&T Research</a>.</p>''' % (round(totalTime, 2)) - - #Form to export graph file as either XGMML (standardized graphing format) or a - #plain text file with trait names/symbols and correlations - - body += ''' - <form name="graphExport"> - <p>Export Graph File:</p> - <p><select name='exportFormat' id='exportFormat' onchange='changeFormat("%s")'> - <option value='plain' %s>Plain Text Format</option> - <option value='xgmml' %s>XGMML Format</option> - </select> -       - <select name='traitType' id='traitType' onchange='changeFormat("%s")'> - <option value='symbol' %s>Trait Symbol</option> - <option value='name' %s>Full Trait Name</option> - </select></p> - - <p> - <input type="button" class="button" name="exportGraphFile" value=" Export Graph File "/> - </p> - </form> - ''' % (graphName, selectedExportFormat[0], selectedExportFormat[1], - graphName, selectedTraitType[0], selectedTraitType[1]) - - body += '''</Blockquote></td> - </TR></TABLE> - <form method="get" action="http://www.google.com/search"> - <input type="text" name="q" size="31" maxlength="255" value="" /> - <input type="submit" value="Google Search" /> - <input type="radio" name="sitesearch" value="" /> The Web - <input type="radio" name="sitesearch" value="genenetwork.org" checked /> GeneNetwork <br /> - </form> - ''' - - - self.dict["body"] = body - - def writeToFile(self, filename): - """ - Output the contents of this HTML page to a file. - """ - handle = open(filename, "w") - handle.write(str(self)) - handle.close() |