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-rwxr-xr-xweb/webqtl/maintainance/updateMenuJS.py127
1 files changed, 0 insertions, 127 deletions
diff --git a/web/webqtl/maintainance/updateMenuJS.py b/web/webqtl/maintainance/updateMenuJS.py
deleted file mode 100755
index 8b6e25d3..00000000
--- a/web/webqtl/maintainance/updateMenuJS.py
+++ /dev/null
@@ -1,127 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# created by Lei Yan 02/08/2011
-import sys, os
-import MySQLdb
-import string
-
-
-
-abs_path = os.path.abspath(os.path.dirname(__file__))
-path1 = abs_path + "/.."
-path2 = abs_path + "/../../javascript"
-sys.path.insert(0, path1)
-
-#must import GN python files after add path
-from base import webqtlConfig
-
-# build MySql database connection
-con = MySQLdb.Connect(db=webqtlConfig.DB_NAME, host=webqtlConfig.MYSQL_SERVER, user=webqtlConfig.DB_USER, passwd=webqtlConfig.DB_PASSWD)
-cursor = con.cursor()
-cursor.execute("SELECT id,menuname FROM Species ORDER BY OrderId")
-results = list(cursor.fetchall())
-collectionsText = ""
-for result in results:
- specieid = result[0]
- speciename = result[1]
- collectionsText += ("['" + speciename + "', ")
- collectionsText += ("null, ")
- collectionsText += ("null, ")
- collectionsText += "\n"
- cursor.execute("select name from InbredSet where speciesid=" + str(specieid))
- results2 = list(cursor.fetchall())
- for result2 in results2:
- inbredsetName = result2[0]
- if not cmp(inbredsetName, "BXD300"):
- continue
- collectionsText += "\t"
- collectionsText += ("['" + inbredsetName + "', ")
- collectionsText += ("'/webqtl/main.py?FormID=dispSelection&RISet=" + inbredsetName + "'], ")
- collectionsText += "\n"
- collectionsText += "],"
- collectionsText += "\n"
-collectionsText = collectionsText.strip()
-
-jstext = """/*
- --- menu items ---
- note that this structure has changed its format since previous version.
- additional third parameter is added for item scope settings.
- Now this structure is compatible with Tigra Menu GOLD.
- Format description can be found in product documentation.
-*/
-var MENU_ITEMS = [
- ['menu_grp1', null, null,
- ['GeneNetwork Intro', '/home.html'],
- ['Enter Trait Data', '/webqtl/main.py?FormID=submitSingleTrait'],
- ['Batch Submission', '/webqtl/main.py?FormID=batSubmit'],
- ],
- ['menu_grp2', null, null,
- ['Search Databases', '/'],
- ['Tissue Correlation', '/webqtl/main.py?FormID=tissueCorrelation'],
- ['SNP Browser', '/webqtl/main.py?FormID=snpBrowser'],
- ['Gene Wiki', '/webqtl/main.py?FormID=geneWiki'],
- ['Interval Analyst', '/webqtl/main.py?FormID=intervalAnalyst'],
- ['QTLminer', '/webqtl/main.py?FormID=qtlminer'],
- ['GenomeGraph', '/dbResults.html'],
- ['Trait Collections',null,null,
-%s
- ],
- ['Scriptable Interface', '/CGIDoc.html'],
- /* ['Simple Query Interface', '/GUI.html'], */
- ['Database Information',null,null,
- ['Database Schema', '/webqtl/main.py?FormID=schemaShowPage'],
- ],
- ['Data Sharing', '/webqtl/main.py?FormID=sharing'],
- ['Microarray Annotations', '/webqtl/main.py?FormID=annotation'],
- ],
- ['menu_grp3', null, null,
- ['Movies','http://www.genenetwork.org/tutorial/movies'],
- ['Tutorials', null, null,
- ['GN Barley Tutorial','/tutorial/pdf/GN_Barley_Tutorial.pdf'],
- ['GN Powerpoint', '/tutorial/ppt/index.html']],
- ['HTML Tour','/tutorial/WebQTLTour/'],
- ['FAQ','/faq.html'],
- ['Glossary of Terms','/glossary.html'],
- ['GN MediaWiki','http://wiki.genenetwork.org/'],
- ],
- ['menu_grp4', '/whats_new.html'
- ],
- ['menu_grp5', '/reference.html'
- ],
- ['menu_grp6', null, null,
- ['Conditions and Limitation', '/conditionsofUse.html'],
- ['Data Sharing Policy', '/dataSharing.html'],
- ['Status and Contacts', '/statusandContact.html'],
- ['Privacy Policy', '/privacy.html'],
- ],
- ['menu_grp8', '/links.html'
- ],
-];
-"""
-
-# create menu_items.js file
-fileHandler = open(path2 + '/menu_items.js', 'w')
-fileHandler.write(jstext % collectionsText)
-fileHandler.close()