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Diffstat (limited to 'web/webqtl/dataSharing/SharingBody.py')
| -rwxr-xr-x | web/webqtl/dataSharing/SharingBody.py | 290 |
1 files changed, 0 insertions, 290 deletions
diff --git a/web/webqtl/dataSharing/SharingBody.py b/web/webqtl/dataSharing/SharingBody.py deleted file mode 100755 index 4445e0d1..00000000 --- a/web/webqtl/dataSharing/SharingBody.py +++ /dev/null @@ -1,290 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -sharing_body_string = """ -<TD vAlign=top width="100%" align="left" height=10 bgColor=#eeeeee> - - <p style="font-size:18px;font-family:verdana;color:black"><B> Data Set Download</B></p> - <Form METHOD="get" ACTION="/webqtl/main.py" name="SEARCHFORM"> - - <TABLE width="800" border="0"> - - <!-- SPECIES SELECTION --> - <TR> - <TD align=right height="35" style="font-size:14px;font-family:verdana;color:black" width="16%"> - <B>Species:</B> - </TD> - <TD width="3%"> - </TD> - <TD NOWRAP width="85%" align="left"> - <DIV Id="menu0"> - <Select NAME="species" size=1 id="species" onchange="fillOptions('species');"> - </Select> - </DIV> - </TD> - </TR> - - <!-- GROUP SELECTION --> - <TR> - <TD align="right" height="35" style="font-size:14px;font-family:verdana;color:black"> - <B>Group:</B> - </TD> - <TD> - </TD> - <TD NOWRAP width="85%" align="left"> - <DIV Id="menu1"> - - <Select NAME="cross" size=1 id="cross" onchange="fillOptions('cross');"> - </Select> - <input type="button" class="button" value=" Info " onCLick="javascript:crossinfo();"> - </DIV> - </TD> - </TR> - - <!-- TYPE SELECTION --> - <TR> - <TD align=right height=35 style="font-size:14px;font-family:verdana;color:black"> - <B>Type:</B> - </TD> - <TD> - </TD> - <TD NOWRAP width="85%" align="left"> - <DIV Id="menu2"> - <Select NAME="tissue" size=1 id="tissue" onchange="fillOptions('tissue');"> - - </Select> - </DIV> - </TD> - </TR> - - <!-- DATABASE SELECTION --> - <TR> - <TD align=right height=35 style="font-size:14px;font-family:verdana;color:black"> - <B>Database:</B> - </TD> - <TD> - </TD> - <TD NOWRAP width="85%" align="left"> - <DIV Id="menu3"> - <Select NAME="database" size=1 id="database"> - </Select> - <input type="button" class="button" value=" Info " onCLick="javascript:databaseinfo();"> - </DIV> - </TD> - </TR> - -<!-- SEARCH, MAKE DEFAULT, ADVANCED SEARCH --> - <TR> - <td></td> - <td></td> - <TD ALIGN="left" HEIGHT="40"> - <INPUT TYPE="button" CLASS="button" STYLE="font-size:12px" VALUE=" Download " onCLick="javascript:datasetinfo();"> - </TD> - </TR> - </TABLE> - - <SCRIPT SRC="/javascript/selectDatasetMenu.js"></SCRIPT> - </FORM> - - <p style="font-size:18px;font-family:verdana;color:black"><B> GeneNetwork Accession Number</B></p> - <form method="get" action="/webqtl/main.py" name="f2" target="_blank"> - <INPUT TYPE="hidden" NAME="FormID" VALUE="sharinginfo"> - <TABLE width="800" border="0"> - <tr> - <td align=right height="35" style="font-size:14px;font-family:verdana;color:black" width="16%"><b>GN:</b></td> - <td width=3%></td> - <td><input type="text" name="GN_AccessionId" size="40" /> E.g. 112</td> - </tr> - <tr> - <td></td> - <td></td> - <td HEIGHT="40"> - <input type="Submit" class="button" STYLE="font-size:12px" VALUE=" Submit "> - </td> - </tr> - </table> - </form> - -</td> -""" - -sharinginfo_body_string = """<td> -<a href="/webqtl/main.py?FormID=sharingListDataset">List of DataSets</a><br> -<H1 class="title" id="parent-fieldname-title">%s -<a href="/webqtl/main.py?FormID=sharinginfoedit&GN_AccessionId=%s"><img src="/images/modify.gif" alt="modify this page" border="0" valign="middle"></a> -<span style="color:red;">%s</span> -</H1> -<table border="0" width="100%%"> -<tr> -<td valign="top" width="50%%"> -<TABLE cellSpacing=0 cellPadding=5 width=100%% border=0> - <TR><td><b>GN Accession:</b> GN%s</TD></tr> - <TR><TD><b>GEO Series:</b> %s</TD></TR> - <TR><TD><b>Title:</b> %s</TD></TR> - <TR><TD><b>Organism:</b> <a href=http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=%s>%s</a></TD></tr> - <tr><TD><b>Group:</b> %s</TD></TR> - <TR><TD><b>Tissue:</b> %s</TD></tr> - <tr><TD><b>Dataset Status:</b> %s</TD></tr> - <TR><TD><b>Platforms:</b> %s</TD></TR> - <TR><TD><b>Normalization:</b> %s</TD></TR> - <TR><TD><!--Code below to Show hide Contact information --> - <a href="#" onclick="colapse('answer1')">See Contact Information</a><br> - <span id="answer1" style="display: none; return: false;"> - %s<br> - %s<br> - %s<br> - %s<br> - %s, %s %s %s<br> - Tel. %s<br> - %s<br> - <a href="%s">%s</a> - </span><!--Code above to Show hide Contact information --></TD></TR> -</TABLE> -</td> -<td valign="top" width="50%%"> -<table border="0" width="100%%"> -<tr> - <td bgcolor="#dce4e1"><b>Download datasets and supplementary data files</b></td> -</tr> -<tr> - <td>%s</td> -</tr> -</table> -</td> -</tr> -</table> -<HR> -<p> -<table width="100%%" border="0" cellpadding="5" cellspacing="0"> -<tr><td><span style="font-size:115%%;font-weight:bold;">Summary:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">About the cases used to generate this set of data:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">About the tissue used to generate this set of data:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">About downloading this data set:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">About the array platform:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">About data values and data processing:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">Data source acknowledgment:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">Experiment Type:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">Overall Design:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">Contributor:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">Citation:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">Submission Date:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">Laboratory:</span></td></tr> - <tr><td> %s<br><br></td></tr> -<tr><td><span style="font-size:115%%;font-weight:bold;">Samples:</span></td></tr> - <tr><td> %s<br><br></td></tr> -</table> -</p> -</td> -""" - -sharinginfoedit_body_string = """<td> -<H1 class="title">%s</H1> -<script language="javascript"> -function CheckGNAccesionId(){ - if (document.sharinginfoupdate.GN_AccesionId.value.length == 0){ - alert("Please input GN Accesion Id"); - document.sharinginfoupdate.GN_AccesionId.focus(); - return false; - } else { - return true; - } -} -</script> -<table border="0" CELLSPACING="0" CELLPADDING="8"> -<form name="sharinginfoupdate" method="post" action="/webqtl/main.py?FormID=sharinginfoupdate" onsubmit="return CheckGNAccesionId();"> -<input type="hidden" name="Id" value="%s"> - - <tr><TH COLSPAN=2><h2 class="title">Principal Investigator</h2></TH></tr> - <tr><td align="right" width="100"><b>Contact Name:</b></td><td width="200"><input type='text' name='Contact_Name' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Emails:</b></td><td><input type='text' name='Emails' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Phone:</b></td><td><input type='text' name='Phone' size='90' value='%s'></td></tr> - <tr><td align="right"><b>URL:</b></td><td><input type='text' name='URL' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Organization Name:</b></td><td><input type='text' name='Organization_Name' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Department:</b></td><td><input type='text' name='Department' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Laboratory:</b></td><td><input type='text' name='Laboratory' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Address:</b></td><td><input type='text' name='Street' size='90' value='%s'></td></tr> - <tr><td align="right"><b>City:</b></td><td><input type='text' name='City' size='90' value='%s'></td></tr> - <tr><td align="right"><b>State:</b></td><td><input type='text' name='State' size='90' value='%s'></td></tr> - <tr><td align="right"><b>ZIP:</b></td><td><input type='text' name='ZIP' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Country:</b></td><td><input type='text' name='Country' size='90' value='%s'></td></tr> - - <tr><TH COLSPAN=2><h2 class="title">Summary</h2></TH></tr> - <tr><td align="right"><b>Summary: </b></td><td><TEXTAREA NAME="Summary" cols="77" rows="15">%s</textarea></td></tr> - - <tr><TH COLSPAN=2><h2 class="title">Biology</h2></TH></tr> - <tr><td align="right"><b>Experiment Design:</b></td><td><TEXTAREA NAME="Experiment_Type" cols="77" rows="15">%s</textarea></td></tr> - <tr><td align="right"><b>About the cases used to<br>generate this set of data:</b></td><td><TEXTAREA NAME="About_Cases" cols="77" rows="15">%s</textarea></td></tr> - <tr><td align="right"><b>About the tissue used to<br>generate this set of data:</b></td><td><TEXTAREA NAME="About_Tissue" cols="77" rows="15">%s</textarea></td></tr> - - <tr><TH COLSPAN=2><h2 class="title">Technique</h2></TH></tr> - <tr><td align="right"><b>About downloading this data set:</b></td><td><TEXTAREA NAME="About_Download" cols="77" rows="15">%s</textarea></td></tr> - <tr><td align="right"><b>About the array platform:</b></td><td><TEXTAREA NAME="About_Array_Platform" cols="77" rows="15">%s</textarea></td></tr> - - <tr><TH COLSPAN=2><h2 class="title">Bioinformatics</h2></TH></tr> - <tr><td align="right"><b>About data values and<br>data processing:</b></td><td><TEXTAREA NAME="About_Data_Values_Processing" cols="77" rows="15">%s</textarea></td></tr> - <tr><td align="right"><b>Overall Design:</b></td><td><TEXTAREA NAME="Overall_Design" cols="77" rows="15">%s</textarea></td></tr> - - <tr><TH COLSPAN=2><h2 class="title">Misc</h2></TH></tr> - <tr><td align="right"><b>Contributor:</b></td><td><TEXTAREA NAME="Contributor" cols="77" rows="15">%s</textarea></td></tr> - <tr><td align="right"><b>Citation:</b></td><td><TEXTAREA NAME="Citation" cols="77" rows="5">%s</textarea></td></tr> - <tr><td align="right"><b>Data source acknowledgment:</b></td><td><TEXTAREA NAME="Data_Source_Acknowledge" cols="77" rows="15">%s</textarea></td></tr> - - <tr><TH COLSPAN=2><h2 class="title">Administrator ONLY</h2></TH></tr> - <tr><td align="right"><b>GN Accesion Id:</b></td><td><input type='text' name='GN_AccesionId' size='90' value='%s'></td></tr> - <tr><td align="right"><b>DB Title in GN:</b></td><td><input type='text' name='InfoPageTitle' size='90' value='%s'></td></tr> - <tr><td align="right"><b>GEO Series:</b></td><td><input type='text' name='GEO_Series' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Status:</b></td><td><input type='text' name='Status' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Title:</b></td><td><input type='text' name='Title' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Organism_Id (Taxonomy ID):</b></td><td><input type='text' name='Organism_Id' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Organism:</b></td><td><input type='text' name='Organism' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Submission Date:</b></td><td><input type='text' name='Submission_Date' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Platforms:</b></td><td><input type='text' name='Platforms' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Species:</b></td><td><input type='text' name='Species' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Tissue:</b></td><td><input type='text' name='Tissue' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Normalization:</b></td><td><input type='text' name='Normalization' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Inbred Set:</b></td><td><input type='text' name='InbredSet' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Info Page Name:</b></td><td><input type='text' name='InfoPageName' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Samples:</b></td><td><input type='text' name='Samples' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Authorized Users:</b></td><td><input type='text' name='AuthorizedUsers' size='90' value='%s'></td></tr> - <tr><td align="right"><b>Progress:</b></td><td><input type='text' name='Progress' size='90' value='%s'></td></tr> - - <tr><td> <colspan='2' align="center"><input type="Submit" class="button" style="font-size:12px" value=" Submit "></td></tr> - -</form> -</table> -</td>""" |