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+<head>
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+<link rel=OLE-Object-Data href="webqtl_demo2.ppt_files/oledata.mso">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt_files/webqtl_demo2.ppt.ppt">
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+  if ( parent.GetHrefObj( parent.g_currentSlide ).m_origVisibility == 1 && !parent.g_allHidden )
+    innerText = "Slide " + parent.GetCurrentSlideNum() + " of " + parent.GetNumSlides();
+  else
+    innerText = "Hidden Slide";
+
+ if ( drawing_app ) {
+ 	    document.write( '<a href=\"javascript:parent.GoToFirst()\">' );
+ 	    document.write( '<img src="prev_active.gif"></a> &nbsp &nbsp &nbsp &nbsp' );
+ }
+
+  fEnable = ( ( parent.g_currentSlide != 1 && parent.GetHrefObj( parent.g_currentSlide - 1 ).m_visibility == 1 ) ) ||
+		( parent.GetCurrentSlideNum() > 1 );
+
+  if( fEnable )
+  {
+    prevBtn = "prev_active.gif";
+    document.write( '<a href=\"javascript:parent.TP_GoToPrevSld()\">' );
+  }
+  else
+    prevBtn = "prev_disabled.gif";
+  
+ document.write( '<img src="' + prevBtn + '" border=0 title="Previous Slide" alt="Previous Slide" >' );
+ 
+  if( fEnable )
+    document.write( '</a>' );
+
+ document.write( '</td> <td align=center> ')
+  document.write( ' &nbsp &nbsp <font face=\"Arial\" color=#000000 size=2>' + innerText + '</font>  &nbsp &nbsp ' );
+ document.write( '</td> <td align=left>' );
+
+  fEnable = ( parent.GetCurrentSlideNum() != parent.GetNumSlides() );
+  if( fEnable )
+  {
+    nextBtn = "next_active.gif";
+    document.write( '<a href=\"javascript:parent.TP_GoToNextSld()\">' );
+  }
+  else
+    nextBtn = "next_disabled.gif";
+  
+document.write( '<img src="' + nextBtn + '" border=0 title="Next Slide" alt="Next Slide">' );
+
+  if( fEnable )
+    document.write( '</a>' );
+ if ( drawing_app ) {
+ 	    document.write( ' &nbsp &nbsp &nbsp &nbsp<a href=\"javascript:parent.GoToLast()\">' );
+ 	    document.write( '<img src="next_active.gif"></a>' );
+ }
+
+
+  document.write( '</td> </tr></table>' );
+
+  if ( ! drawing_app && !false ) {
+  	document.write( '</td>  <td align=right valign=top>' );
+  	document.write( '<a href=\"javascript:parent.FullScreen()\"> ' +
+  	'<img src="fullscr.gif" border=0 title="Full Screen Slide Show" alt="Full Screen Slide Show">' + 
+  	'</a>' );
+ }
+  document.write( '</td> </tr></table>' );
+}
+//-->
+</script>
+
+</head>
+<body background=navbg.gif topmargin=2 scroll="no"  onresize="restore()">
+<center><script language=JavaScript><!--
+WriteBody();//-->
+</script></center>
+</body>
+</html>
+\ No newline at end of file
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new file mode 100755
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/outline_collapsed.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Robots content=NoIndex>
+<style>
+<!--a {text-decoration: none;}-->
+</style>
+</head>
+<body bgcolor=black text=white link=white vlink=white alink=white
+onload=" parent.base.highlite();" onresize="self.location.reload();">
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID1 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p1" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('1')" id=AREF>The GeneNetwork and WebQTL :
+  PART 2<span style="mso-spacerun: yes">&nbsp;&nbsp; </span><br>
+  link to www.genenetwork.org</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID2 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p2" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('2')" id=AREF>Slide 2</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID3 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p3" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('3')" id=AREF>Slide 3</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID4 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p4" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('4')" id=AREF><font face=Verdana>Discovering
+  upstream modulatory loci</font></a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID5 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p5" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('5')" id=AREF>WebQTL searches for upstream
+  controllers</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID6 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p6" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('6')" id=AREF>Genetic versus Physical maps
+  for App expression</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID7 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p7" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('7')" id=AREF>Physical map for distal
+  chromosome 7</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID8 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p8" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('8')" id=AREF>Evaluating candidate genes</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID9 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p9" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('9')" id=AREF>Physical maps are zoomable</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID10 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p10" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('10')" id=AREF>Evaluating Ctbp2 as a
+  candidate QTL for App</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID11 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p11" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('11')" id=AREF>Evaluating Ctbp2 using
+  other resources</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID12 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p12" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('12')" id=AREF>&quot;Summary of Part 2&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID13 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p13" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('13')" id=AREF>Test Questions</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID14 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p14" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('14')" id=AREF>Contact for comments and
+  improvements:</a></b></font></td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/outline_expand.gif b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/outline_expand.gif
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/outline_expanded.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/outline_expanded.htm
new file mode 100755
index 00000000..c33cf334
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/outline_expanded.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Robots content=NoIndex>
+<style>
+<!--a {text-decoration: none;}-->
+</style>
+</head>
+<body bgcolor=black text=white link=white vlink=white alink=white
+onload=" parent.base.highlite();" onresize="self.location.reload();">
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID1 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p1" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('1')" id=AREF>The GeneNetwork and WebQTL :
+  PART 2<span style="mso-spacerun: yes">&nbsp;&nbsp; </span><br>
+  link to www.genenetwork.org</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Part 1. How to study expression
+  variation and genetic correlation (slides 2&#8211;17)</font></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Part 2. Discovering upstream modulators
+  (slides 18&#8211;29)</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID2 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p2" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('2')" id=AREF>Slide 2</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID3 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p3" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('3')" id=AREF>Slide 3</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID4 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p4" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('4')" id=AREF><font face=Verdana>Discovering
+  upstream modulatory loci</font></a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID5 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p5" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('5')" id=AREF>WebQTL searches for upstream
+  controllers</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID6 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p6" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('6')" id=AREF>Genetic versus Physical maps
+  for App expression</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID7 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p7" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('7')" id=AREF>Physical map for distal
+  chromosome 7</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID8 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p8" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('8')" id=AREF>Evaluating candidate genes</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID9 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p9" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('9')" id=AREF>Physical maps are zoomable</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID10 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p10" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('10')" id=AREF>Evaluating Ctbp2 as a
+  candidate QTL for App</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID11 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p11" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('11')" id=AREF>Evaluating Ctbp2 using
+  other resources</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID12 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p12" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('12')" id=AREF>&quot;Summary of Part 2&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Summary of Part 2</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID13 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p13" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('13')" id=AREF>Test Questions</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID14 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p14" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('14')" id=AREF>Contact for comments and
+  improvements:</a></b></font></td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/outline_navigation_bar.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/outline_navigation_bar.htm
new file mode 100755
index 00000000..85b11c52
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/outline_navigation_bar.htm
@@ -0,0 +1,37 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script><script language=JavaScript><!--
+
+function restore() {
+if( navigator.platform != "MacPPC" )
+	self.location.reload();
+}
+
+function writebody() {
+
+	if ( parent.g_showoutline ) {
+			document.write('<table border=0 valign=top cellspacing=0 width=\"100%\">' + 
+			'<tr valign=top><td align=left valign=top>' );
+			  document.write( '<a href=\"javascript:parent.ToggleOutline()\" ><img src=\"outline.gif\" title=\"Show/Hide Outline\" alt=\"Show/Hide Outline\" border=0></a>' );
+			  document.write( '</td>' );
+		if( parent.g_outline_href == parent.OUTLINE_EXPAND_HREF ) {
+			document.write( '<td align=right valign=top><a href=\"javascript:parent.CollapseOutline()\">' +
+			'<img src="outline_collapse.gif" title="Collapse Outline" alt="Collapse Outline" border=0>' +  
+			'</a></td>');
+		} else {
+			document.write('<td align=right valign=top><a href=\"javascript:parent.ExpandOutline()\">' +
+			'<img src="outline_expand.gif" title="Expand Outline" alt="Expand Outline" border=0>' + 
+			 '</a></td>');
+		}
+		document.write("</tr></table>");
+	}
+	else {
+			document.write( '<table border=0 valign=top cellspacing=0 width=\"100%\"><td align=\"left\"><a href=\"javascript:parent.ToggleOutline()\" ><img border=0 src=\"outline.gif\" title=\"Show/Hide Outline\" alt=\"Show/Hide Outline\"></a></td></table>' );
+	}
+}//-->
+</script>
+</head>
+<body background=navbg.gif topmargin=1 onresize="restore()" scroll="no" >
+<script language=JavaScript><!--
+writebody();
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/prev_active.gif b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/prev_active.gif
new file mode 100755
index 00000000..004a872f
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/prev_active.gif
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/prev_disabled.gif b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/prev_disabled.gif
new file mode 100755
index 00000000..8a467185
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/prev_disabled.gif
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/script.js b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/script.js
new file mode 100755
index 00000000..8110ab9a
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/script.js
@@ -0,0 +1,1343 @@
+var CtxAlwaysOn = false;
+function LoadSld( slideId )
+{
+	if( !g_supportsPPTHTML ) return
+	if( slideId )
+		parent.base.SldUpdated(slideId)
+	g_origSz=parseInt(SlideObj.style.fontSize)
+	g_origH=SlideObj.style.posHeight
+	g_origW=SlideObj.style.posWidth
+	g_scaleHyperlinks=(document.all.tags("AREA").length>0)
+	if ( IsWin("PPTSld") && !parent.IsFullScrMode() )
+		parent.base.highlite();	
+	if( g_scaleHyperlinks )
+		InitHLinkArray()
+	if( g_scaleInFrame||(IsWin("PPTSld") && parent.IsFullScrMode() ) )
+		document.body.scroll="no"
+	_RSW()
+	if( IsWin("PPTSld") && (parent.IsFullScrMode() || CtxAlwaysOn ) )	{
+		document.oncontextmenu=parent._CM;
+	self.focus(); 
+
+	}
+}
+function MakeSldVis( fTrans ) 
+{
+	fTrans=fTrans && g_showAnimation
+	if( fTrans )
+	{
+		if( g_bgSound ) {
+			idx=g_bgSound.indexOf(",");
+			pptSound.src=g_bgSound.substr( 0, idx );
+			pptSound.loop= -(parseInt(g_bgSound.substr(idx+1)));
+		}
+		SlideObj.filters.revealtrans.Apply()
+	}
+	SlideObj.style.visibility="visible"
+	if( fTrans )
+		SlideObj.filters.revealtrans.Play()
+}
+function MakeNotesVis() 
+{
+	if( !IsNts() ) return false 
+	SlideObj.style.display="none"
+	nObj = document.all.item("NotesObj")
+	parent.SetHasNts(0)
+	if( nObj ) { 
+		nObj.style.display=""
+		parent.SetHasNts(1)
+	}
+	return 1
+}
+function Redirect( frmId,sId )
+{
+	var str=document.location.hash,idx=str.indexOf('#')
+	if(idx>=0) str=str.substr(1);
+	if( window.name != frmId && ( sId != str) ) {
+		obj = document.all.item("Main-File")
+		window.location.href=obj.href+"#"+sId
+		return 1
+	}
+	return 0
+}
+function HideMenu() { if( frames["PPTSld"] && PPTSld.document.all.item("ctxtmenu") && PPTSld.ctxtmenu.style.display!="none" ) { PPTSld.ctxtmenu.style.display='none'; return true } return false }
+function IsWin( name ) { return window.name == name }
+function IsNts() { return IsWin("PPTNts") }
+function IsSldOrNts() { return( IsWin("PPTSld")||IsWin("PPTNts") ) }
+function SupportsPPTAnimation() { return( navigator.platform == "Win32" && navigator.appVersion.indexOf("Windows")>0 ) }
+function SupportsPPTHTML()
+{
+	var appVer=navigator.appVersion, msie=appVer.indexOf( "MSIE " ), inex = appVer.indexOf( "Internet Explorer " ), ver=0
+	if( msie >= 0 )
+		ver=parseFloat( appVer.substring( msie+5, appVer.indexOf(";",msie) ) )
+	else if( inex >= 0 )
+		ver=parseFloat( appVer.substring( inex+18, appVer.indexOf(";",inex) ) )
+	else
+		ver=parseInt(appVer)
+
+	return( ver >= 4  )
+}
+var MHTMLPrefix = CalculateMHTMLPrefix(); 
+function CalculateMHTMLPrefix()
+{
+	if ( document.location.protocol == 'mhtml:') { 
+		href=new String(document.location.href) 
+		Start=href.indexOf('!')+1 
+		End=href.lastIndexOf('/')+1 
+		if (End < Start) 
+			return href.substring(0, Start) 
+		else 
+		return href.substring(0, End) 
+	}
+	return '';
+}
+
+function LoadNavSld(slideId) {
+playList();
+parent.createCM();
+	if( !g_supportsPPTHTML ) return
+	if( IsWin("PPTSld") && slideId )
+		parent.base.SldUpdated(slideId)
+	self.focus(); 
+
+}
+var hasNarration = false;
+function _RSW()
+{
+	if( !g_supportsPPTHTML || IsNts() ||
+	  ( !g_scaleInFrame && (( window.name != "PPTSld" ) ) ) )
+		return
+
+	cltWidth=document.body.clientWidth
+	cltHeight=document.body.clientHeight
+	factor=(1.0*cltWidth)/g_origW
+	if( cltHeight < g_origH*factor )
+		factor=(1.0*cltHeight)/g_origH
+
+	newSize = g_origSz * factor
+	if( newSize < 1 ) newSize=1
+
+	s=SlideObj.style
+	s.fontSize=newSize+"px"
+	s.posWidth=g_origW*factor
+	s.posHeight=g_origH*factor
+	s.posLeft=(cltWidth-s.posWidth)/2
+	s.posTop=(cltHeight-s.posHeight)/2
+
+	if ( hasNarration ) {
+		obj = document.all.NSPlay.style;
+		mySld = document.all.SlideObj.style;
+		obj.position = 'absolute';
+		obj.posTop = mySld.posTop + mySld.posHeight - 20;
+		obj.posLeft = mySld.posLeft + mySld.posWidth - 20;
+	}
+	if( g_scaleHyperlinks )
+		ScaleHyperlinks( factor );	
+}
+function IsMac() {
+	return (window.navigator.platform.indexOf("Mac") >= 0 );
+}
+
+function HitOK( evt ) {
+	//Nav Only function
+	return (evt.which == 1 || (IsMac() && evt.which == 3) );
+}
+function _KPH(event)
+{ 
+
+  if ( parent.base.msie < 0 )  {
+    
+    	if ( ( (event.target.name && event.target.name == "hasMap" ) || (event.target.href && event.target.href != "") ) && parent.g_docTable[0].type != "jpeg" && HitOK( event )  ) {
+    		return; /* to make hyperlinks in fullscreen mode traversable */
+    	}
+	if( IsContextMenu() )
+		return parent.KPH(event);
+  	if ( parent.IsFullScrMode()  && event.which == 27 )
+  		parent.base.CloseFullScreen();
+  	else if ( parent.base.IsFullScrMode() && ( (!IsMac() && event.which == 3) || ( IsMac() && (event.modifiers & Event.CONTROL_MASK) && event.which == 1 ) ) )
+  		return parent.KPH(event);
+  	else if( (event.which == 32) ||  (event.which == 13) || HitOK( event )  ) {
+	    if( window.name == "PPTSld" )
+	      parent.PPTSld.DocumentOnClick();
+	    else
+	      parent.M_GoNextSld();
+      }	
+      else if ( parent.IsFullScrMode() && ((event.which == 78)  || (event.which == 110) || (event.which == 29) || (event.which == 31) || (event.which == 12)) )
+  		parent.M_GoNextSld();
+      else if ( parent.IsFullScrMode() && ( (event.which == 80)  || (event.which == 112) || (event.which == 30) || (event.which == 28) || (event.which == 11) || (event.which == 8)) )
+  		parent.M_GoPrevSld();
+
+      return;
+   }
+  	
+  if( IsNts() ) return;
+
+  if(parent.IsFullScrMode()  && event.keyCode == 27 && !parent.HideMenu() )
+    parent.base.CloseFullScreen();
+  else if( (event.keyCode == 32) || (event.keyCode == 13) )
+  {
+    if( window.name == "PPTSld" )
+      parent.PPTSld.DocumentOnClick();
+   else
+      parent.M_GoNextSld();
+  }
+  else if ( parent.IsFullScrMode() && ((event.keyCode == 78)  || (event.keyCode == 110)) )
+  	parent.M_GoNextSld();
+  else if ( parent.IsFullScrMode() && ((event.keyCode == 80)  || (event.keyCode == 112)) )
+  	parent.M_GoPrevSld();
+}
+
+function DocumentOnClick(event)
+{
+		if ( g_doAdvOnClick && !parent.IsFullScrMode() ) {
+			parent.base.TP_GoToNextSld();	
+			return;
+		}
+		
+	if ( parent.base.msie < 0 ) 
+	{
+		if( ( g_allowAdvOnClick  && parent.IsFullScrMode() ) || g_doAdvOnClick ||
+		    (event && ( (event.which == 32) || (event.which == 13) ) ) )
+			parent.M_GoNextSld();
+			return;
+	}		
+	if( IsNts() || (parent.IsFullScrMode() && parent.HideMenu() ) ) return;
+	if( ( g_allowAdvOnClick && parent.IsFullScrMode() ) || g_doAdvOnClick ||
+	    (event && ( (event.keyCode==32) || (event.keyCode == 13) ) ) )
+		parent.M_GoNextSld();
+}
+
+
+var g_supportsPPTHTML = SupportsPPTHTML(), g_scaleInFrame = true, gId="", g_bgSound="",
+    g_scaleHyperlinks = false, g_allowAdvOnClick = true, g_showInBrowser = false, g_doAdvOnClick = false;
+
+ var g_showAnimation = 0;
+var g_hasTrans = false, g_autoTrans = false, g_transSecs = 0;
+var g_animManager = null;
+
+var ENDSHOW_MESG="End of slide show, click to exit.", SCREEN_MODE="Frames", gIsEndShow=0, NUM_VIS_SLDS=14, SCRIPT_HREF="script.js", FULLSCR_HREF="fullscreen.htm";
+var gCurSld = gPrevSld = 1, g_offset = 0, gNtsOpen = gHasNts = gOtlTxtExp = gNarrationPaused = false, gOtlOpen = true
+window.gPPTHTML=SupportsPPTHTML()
+var g_hideNav = 0;
+function UpdNtsPane(){ PPTNts.location.replace( MHTMLPrefix+GetHrefObj( gCurSld ).mNtsHref ) }
+function UpdNavPane( sldIndex ){ if(gNavLoaded) PPTNav.UpdNav() }
+function UpdOtNavPane(){ if(gOtlNavLoaded) PPTOtlNav.UpdOtlNav() }
+function UpdOtlPane(){ if(gOtlLoaded) PPTOtl.UpdOtl() }
+function SetHasNts( fVal )
+{
+	if( gHasNts != fVal ) {
+		gHasNts=fVal
+		UpdNavPane()
+	}
+}
+
+function ToggleVNarration()
+{
+	if ( base.msie < 0 ) {
+		PPTSld.ToggleSound( false, PPTSld.document.NSPlay );
+		return;
+	}
+	
+	rObj=PPTSld.document.all("NSPlay")
+	if( rObj ) {
+		if( gNarrationPaused )
+			rObj.Play()
+		else
+			rObj.Pause()
+
+		gNarrationPaused=!gNarrationPaused
+	}
+}
+
+function PrevSldViewed(){ GoToSld( GetHrefObj(gPrevSld).mSldHref ) }
+function HasPrevSld() { return ( gIsEndShow || ( g_currentSlide != 1 && GetHrefObj( g_currentSlide-1 ).mVis == 1 )||( GetCurrentSlideNum() > 1 ) ) }
+function HasNextSld() { return (GetCurrentSlideNum() != GetNumSlides()) }
+function StartEndShow()
+{
+//	g_hideNav = 1;
+//	PPTNav.location.reload();
+	if( PPTSld.event ) PPTSld.event.cancelBubble=true
+
+	doc=PPTSld.document
+	doc.open()
+	doc.writeln('<html><head><script > /*defer>*/ g_ctxmenu = 0; ' +
+	'if( parent.base.msie < 0 )  { document.captureEvents(Event.KEYPRESS); document.captureEvents(Event.MOUSEDOWN); document.onkeypress = _KPH; document.onmousedown = _KPH; } ' +
+	'function DocumentOnClick(event) { return _KPH(event); }  function IsContextMenu() { return (g_ctxmenu ==1); } ' +
+	'function _KPH(event)' +
+	'{  ' +
+	'if ( parent.base.msie < 0  && (parent.IsFullScrMode() ) && event ) { if ( (!parent.IsMac() && event.which == 3) || ( parent.IsMac() && (event.modifiers & Event.CONTROL_MASK) && event.which == 1 ) )  { return parent.KPH(event); } ' + 
+	' else if (event.which == 27 || event.which == 32 || event.which == 13 || parent.HitOK( event ) || (event.which == 78)  || (event.which == 110) || (event.which == 29) || (event.which == 31) || (event.which == 12) ) { if ( IsContextMenu() ) { return parent.KPH(event); }  parent.base.CloseFullScreen(); return; } ' +
+	' else if ( (event.which == 80)  || (event.which == 112) || (event.which == 30) || (event.which == 28) || (event.which == 11) || (event.which == 8) ) { parent.M_GoPrevSld(); } } ' +
+	'if( parent.HideMenu() ) return; if( (parent.IsFullScrMode() ) && event) { if ( (event.keyCode==27 || event.keyCode == 13 || event.keyCode==32 || event.type=="click" ) || (event.keyCode == 78)  || (event.keyCode == 110) ) { parent.base.CloseFullScreen(); }' +
+	' else if ( (event.keyCode == 80)  || (event.keyCode == 112) ) { parent.M_GoPrevSld(); } } } function Unload() { parent.gIsEndShow=0; } function SetupEndShow() {    if ( !parent.IsFullScrMode() ) { return; } else { parent.PPTNav.location.reload(); }  parent.gIsEndShow=1; if ( parent.g_docTable[0].type != "jpeg" ) { if ( parent.base.msie < 0 ) {parent.createCM(); } document.oncontextmenu=parent._CM; } }</script></head><body scroll=\"no\" onclick=\"DocumentOnClick(event)\" onkeypress=\"_KPH(event)\" bgcolor=\"black\" onload=\"SetupEndShow()\" onunload=\"Unload()\"><center><p><font face=Tahoma color=white size=2><br><b>' + ENDSHOW_MESG + '</b></font></p></center></body></html>')
+	doc.close()
+}
+function SetSldVisited(){ gDocTable[gCurSld-1].mVisited=true }
+function IsSldVisited(){ return gDocTable[gCurSld-1].mVisited }
+function hrefList( sldHref, visible, sldIdx )
+{
+	this.mSldHref= this.mNtsHref = sldHref
+	this.mSldIdx = sldIdx
+	this.mOrigVis= this.mVis = visible
+	this.mVisited= false
+}
+var gDocTable = new Array(
+   new hrefList("slide0001.htm", 1, 1),
+   new hrefList("slide0002.htm", 1, 2),
+   new hrefList("slide0003.htm", 1, 3),
+   new hrefList("slide0004.htm", 1, 4),
+   new hrefList("slide0005.htm", 1, 5),
+   new hrefList("slide0006.htm", 1, 6),
+   new hrefList("slide0007.htm", 1, 7),
+   new hrefList("slide0008.htm", 1, 8),
+   new hrefList("slide0009.htm", 1, 9),
+   new hrefList("slide0010.htm", 1, 10),
+   new hrefList("slide0011.htm", 1, 11),
+   new hrefList("slide0012.htm", 1, 12),
+   new hrefList("slide0013.htm", 1, 13),
+   new hrefList("slide0014.htm", 1, 14)
+);
+
+function ImgBtn( oId,bId,w,action )
+{
+	var t=this
+	t.Perform    = _IBP
+	t.SetActive  = _IBSetA
+ t.SetInactive= _IBSetI
+	t.SetPressed = _IBSetP
+	t.SetDisabled= _IBSetD
+	t.Enabled    = _IBSetE
+	t.ChangeIcon = null
+	t.UserAction = action
+	t.ChgState   = _IBUI
+	t.mObjId   = oId
+	t.mBorderId= bId
+	t.mWidth   = w
+	t.mIsOn    = t.mCurState = 0
+}
+function _IBSetA()
+{
+	if( this.mIsOn ) {
+		obj=this.ChgState( gHiliteClr,gShadowClr,2 )
+		obj.style.posTop=0
+	}
+}
+function _IBSetI()
+{
+	if( this.mIsOn ) {
+		obj=this.ChgState( gFaceClr,gFaceClr,1 )
+		obj.style.posTop=0 
+	}
+}
+function _IBSetP()
+{
+	if( this.mIsOn ) {
+		obj=this.ChgState( gShadowClr,gHiliteClr,2 )
+		obj.style.posLeft+=1; obj.style.posTop+=1
+	}
+}
+function _IBSetD()
+{  
+	obj=this.ChgState( gFaceClr,gFaceClr,0 )
+	obj.style.posTop=0 
+}
+function _IBSetE( state )
+{
+	var t=this
+	GetObj( t.mBorderId ).style.visibility="visible"
+	if( state != t.mIsOn ) {
+		t.mIsOn=state
+		if( state )
+			t.SetInactive()
+		else
+			t.SetDisabled()
+	}
+}
+function _IBP()
+{
+	var t=this
+	if( t.mIsOn ) {
+		if( t.UserAction != null )
+			t.UserAction()
+		if( t.ChangeIcon ) {
+			obj=GetObj(t.mObjId)
+			if( t.ChangeIcon() )
+				obj.style.posLeft=obj.style.posLeft+(t.mCurState-4)*t.mWidth
+			else
+				obj.style.posLeft=obj.style.posLeft+(t.mCurState-0)*t.mWidth
+		}
+		t.SetActive()
+	}  
+}
+function _IBUI( clr1,clr2,nextState )
+{
+	var t=this
+	SetBorder( GetObj( t.mBorderId ),clr1,clr2 )
+	obj=GetObj( t.mObjId )
+	obj.style.posLeft=obj.style.posLeft+(t.mCurState-nextState)*t.mWidth-obj.style.posTop
+	t.mCurState=nextState
+	return obj
+}
+function TxtBtn( oId,oeId,action,chkState )
+{
+	var t=this
+	t.Perform    = _TBP
+	t.SetActive  = _TBSetA
+	t.SetInactive= _TBSetI
+	t.SetPressed = _TBSetP
+	t.SetDisabled= _TBSetD
+	t.SetEnabled = _TBSetE
+	t.GetState   = chkState
+	t.UserAction = action
+	t.ChgState   = _TBUI
+	t.mObjId      = oId
+	t.m_elementsId= oeId
+	t.mIsOn       = 1
+}
+function _TBSetA()
+{
+	var t=this
+	if( t.mIsOn && !t.GetState() )
+		t.ChgState( gHiliteClr,gShadowClr,0,0 )
+}
+function _TBSetI()
+{
+	var t=this
+	if( t.mIsOn && !t.GetState() )
+		t.ChgState( gFaceClr,gFaceClr,0,0 )
+}
+function _TBSetP()
+{
+	if( this.mIsOn )
+		this.ChgState( gShadowClr,gHiliteClr,1,1 )
+}
+function _TBSetD()
+{   
+	this.ChgState( gFaceClr,gFaceClr,0,0 )
+	this.mIsOn = 0
+}
+function _TBSetE()
+{
+	var t=this
+	if( !t.GetState() )
+		t.ChgState( gFaceClr,gFaceClr,0,0 )
+	else
+		t.ChgState( gShadowClr,gHiliteClr,1,1 )
+	t.mIsOn = 1
+}
+function _TBP()
+{
+	var t=this
+	if( t.mIsOn ) { 
+		if( t.UserAction != null )
+			t.UserAction()
+		if( t.GetState() )
+			t.SetPressed()
+		else
+			t.SetActive()
+	}  
+}
+function _TBUI( clr1,clr2,lOffset,tOffset )
+{
+	SetBorder( GetObj( this.mObjId ),clr1,clr2 )
+	Offset( GetObj( this.m_elementsId ),lOffset,tOffset )
+}
+function GetObj( objId ){ return document.all.item( objId ) }
+function Offset( obj, top, left ){ obj.style.top=top; obj.style.left=left }
+function SetBorder( obj, upperLeft, lowerRight )
+{
+	s=obj.style;
+	s.borderStyle      = "solid"
+	s.borderWidth      = 1 
+	s.borderLeftColor  = s.borderTopColor = upperLeft
+	s.borderBottomColor= s.borderRightColor = lowerRight
+}
+function GetBtnObj(){ return gBtnArr[window.event.srcElement.id] }
+function BtnOnOver(){ b=GetBtnObj(); if( b != null ) b.SetActive() }
+function BtnOnDown(){ b=GetBtnObj(); if( b != null ) b.SetPressed() }
+function BtnOnOut(){ b=GetBtnObj(); if( b != null ) b.SetInactive() }
+function BtnOnUp()
+{
+	b=GetBtnObj()
+	if( b != null )
+		b.Perform()
+	else
+		Upd()
+}
+function GetNtsState(){ return parent.gNtsOpen }
+function GetOtlState(){ return parent.gOtlOpen }
+function GetOtlTxtState(){ return parent.gOtlTxtExp }
+function NtsBtnSetFlag( fVal )
+{
+	s=document.all.item( this.m_flagId ).style
+	s.display="none"
+	if( fVal )
+		s.display=""
+	else
+		s.display="none"
+}
+
+var gHiliteClr="THREEDHIGHLIGHT",gShadowClr="THREEDSHADOW",gFaceClr="THREEDFACE"
+var gBtnArr = new Array()
+gBtnArr["nb_otl"] = new TxtBtn( "nb_otl","nb_otlElem",parent.ToggleOtlPane,GetOtlState )
+gBtnArr["nb_nts"] = new TxtBtn( "nb_nts","nb_ntsElem",parent.ToggleNtsPane,GetNtsState )
+gBtnArr["nb_prev"]= new ImgBtn( "nb_prev","nb_prevBorder",30,parent.GoToPrevSld )
+gBtnArr["nb_next"]= new ImgBtn( "nb_next","nb_nextBorder",30,parent.GoToNextSld )
+gBtnArr["nb_sldshw"]= new ImgBtn( "nb_sldshw","nb_sldshwBorder",18,parent.FullScreen )
+gBtnArr["nb_voice"]  = new ImgBtn( "nb_voice","nb_voiceBorder",18,parent.ToggleVNarration )
+gBtnArr["nb_otlTxt"]= new ImgBtn( "nb_otlTxt","nb_otlTxtBorder",23,parent.ToggleOtlText )
+gBtnArr["nb_nts"].m_flagId= "notes_flag"
+gBtnArr["nb_nts"].SetFlag = NtsBtnSetFlag
+gBtnArr["nb_otlTxt"].ChangeIcon= GetOtlTxtState
+var sNext="Next",sPrev="Previous",sEnd="End Show",sFont="Arial", alwaysOn = false
+function ShowMenu()
+{
+	BuildMenu();
+	var doc=PPTSld.document.body,x=PPTSld.event.clientX+doc.scrollLeft,y=PPTSld.event.clientY+doc.scrollTop
+
+	m = PPTSld.document.all.item("ctxtmenu")
+	m.style.pixelLeft=x
+	if( (x+m.scrollWidth > doc.clientWidth)&&(x-m.scrollWidth > 0) )
+		m.style.pixelLeft=x-m.scrollWidth
+
+	m.style.pixelTop=y
+	if( (y+m.scrollHeight > doc.clientHeight)&&(y-m.scrollHeight > 0) )
+		m.style.pixelTop=y-m.scrollHeight
+
+	m.style.display=""
+}
+function _CM()
+{
+	if( !parent.IsFullScrMode() && !alwaysOn) return;
+	
+	if(!PPTSld.event.ctrlKey) {
+		ShowMenu()
+		return false
+	} else
+		HideMenu()
+}
+
+function processNavKPH(event) {
+   if ( PPTSld &&  (event.keyCode != 13 || !event.srcElement.href || event.srcElement.href == "" ) )
+	return PPTSld._KPH(event);
+}
+function processNavClick() {
+	HideMenu();
+	return true;
+}
+function BuildMenu()
+{
+	if( PPTSld.document.all.item("ctxtmenu") ) return
+
+	var mObj=CreateItem( PPTSld.document.body )
+mObj.id="ctxtmenu"
+	var s=mObj.style
+	s.position="absolute"
+ s.cursor="default"
+	s.width="100px"
+	SetCMBorder(mObj,"menu","black")
+
+	var iObj=CreateItem( mObj )
+	SetCMBorder( iObj, "threedhighlight","threedshadow" )
+	iObj.style.padding=2
+	if ( self.IsFullScrMode() ) {
+		CreateMenuItem( iObj,sNext,M_GoNextSld,M_True )
+		CreateMenuItem( iObj,sPrev,M_GoPrevSld,M_HasPrevSld )
+	}
+	else {
+		CreateMenuItem( iObj,sNext, base.TP_GoToNextSld, base.HasNextSld )
+		CreateMenuItem( iObj,sPrev,base.GoToPrevSld, base.HasPrevSld )
+	}
+	var sObj=CreateItem( iObj )
+	SetCMBorder(sObj,"menu","menu")
+	var s=sObj.style
+	s.borderTopColor="threedshadow"
+	s.borderBottomColor="threedhighlight"
+	s.height=1
+	s.fontSize="0px"
+	if ( self.IsFullScrMode() ) 
+		CreateMenuItem( iObj,sEnd,M_End,M_True )
+	else
+		CreateMenuItem( iObj,sEnd,M_End,M_False )
+}
+function Highlight() { ChangeClr("activecaption","threedhighlight") }
+function Deselect() { ChangeClr("threedface","menutext") }
+function Perform()
+{
+	e=PPTSld.event.srcElement
+	if( e.type=="menuitem" && e.IsActive() )
+		e.Action()
+	else
+		PPTSld.event.cancelBubble=true
+}
+function ChangeClr( bg,clr )
+{
+	e=PPTSld.event.srcElement
+	if( e.type=="menuitem" && e.IsActive() ) {
+		e.style.backgroundColor=bg
+		e.style.color=clr
+	}
+}
+
+function M_HasPrevSld() { return( base.HasPrevSld() ) }
+function M_GoNextSld() { 
+	base.SetFSMode(1);
+	if( gIsEndShow )
+		 M_End();
+	else {
+		if ( base.HasNextSld() )
+		 base.GoToNextSld();
+		else if (  base.EndSlideShow ) {
+		 StartEndShow();
+		 gIsEndShow = 1;
+		 
+		 PPTNav.location.reload();
+		}
+		else
+			base.CloseFullScreen();
+	}
+}
+function M_GoPrevSld() {
+	base.SetFSMode(1);
+	g_hideNav = 0;
+	if( gIsEndShow ) { 
+		gIsEndShow = 0;
+		if ( base.msie > 0 && IsMac() ) 
+			ChangeFrame( SLIDE_FRAME, GetHrefObj( g_currentSlide ).m_slideHref );
+		else	
+		PPTSld.history.back();
+		
+		 PPTNav.location.reload();
+		if( PPTSld.event )
+			 PPTSld.event.cancelBubble=true;
+	}
+	else
+	 	base.GoToPrevSld();
+}
+function M_True() { return true }
+function M_False() { return false }
+
+function M_End() {
+	base.CloseFullScreen();
+	/*PPTSld.event.cancelBubble=true;
+	window.close( self )*/
+}
+
+function CreateMenuItem( node,text,action,eval )
+{
+	var e=CreateItem( node )
+	e.type="menuitem"
+	e.Action=action
+	e.IsActive=eval
+	e.innerHTML=text
+
+	if( !e.IsActive() )
+		e.style.color="threedshadow"
+	e.onclick=Perform
+	e.onmouseover=Highlight
+	e.onmouseout=Deselect
+	s=e.style;
+	s.fontFamily=sFont
+	s.fontSize="8pt"
+	s.paddingLeft=2
+}
+function CreateItem( node )
+{
+	var elem=PPTSld.document.createElement("DIV")
+	node.insertBefore( elem )
+	return elem
+}
+function SetCMBorder( o,ltClr,rbClr )
+{
+	var s=o.style
+	s.backgroundColor="menu"
+	s.borderStyle="solid"
+	s.borderWidth=1
+	s.borderColor=ltClr+" "+rbClr+" "+rbClr+" "+ltClr
+}
+
+/* netscape context menu */
+g_ctxmenu = 0;
+function setRect( obj, X, Y, W, H ) {
+	obj.top = Y;
+	obj.left = X;
+	obj.clip.top = 0;
+	obj.clip.left = 0;
+	obj.clip.bottom = H;
+	obj.clip.right = W;
+}	
+
+function KPH(event) {
+	if ( ! base.IsFullScrMode() && !alwaysOn )
+		return true;
+		
+	if ( (!IsMac() &&event.which == 3) || ( IsMac() && (event.modifiers & Event.CONTROL_MASK) && event.which == 1 )   ) {
+		PPTSld.g_ctxmenu = 1;
+		PPTSld.stripUobj.visibility = "show";
+		PPTSld.stripDobj.visibility = "show";
+		PPTSld.shadeUobj.visibility = "show";
+		PPTSld.shadeDobj.visibility = "show";
+		PPTSld.panelobj.visibility = "show";
+		PPTSld.Fobj.visibility = "show";
+		PPTSld.Bobj.visibility = "show";
+		PPTSld.Eobj.visibility = "show";
+
+		setRect(PPTSld.shadeUobj, event.pageX-2, event.pageY-2, 82, 67 );		
+		setRect(PPTSld.shadeDobj, event.pageX, event.pageY, 82, 67 );		
+		setRect(PPTSld.panelobj, event.pageX, event.pageY, 80, 65 );		
+		setRect(PPTSld.Fobj, event.pageX, event.pageY, 80, 20 );
+		setRect(PPTSld.Bobj, event.pageX, event.pageY+20, 80, 20 );
+		setRect(PPTSld.stripUobj, event.pageX, event.pageY+41, 80, 1 );		
+		setRect(PPTSld.stripDobj, event.pageX, event.pageY+43, 80, 1 );		
+		setRect(PPTSld.Eobj, event.pageX, event.pageY+45, 80, 20 );
+		return false;
+	}
+	if ( HitOK( event ) ) {
+	PPTSld.g_ctxmenu = 0;
+		PPTSld.stripUobj.visibility = "hide";
+		PPTSld.stripDobj.visibility = "hide";
+		PPTSld.shadeUobj.visibility = "hide";
+		PPTSld.shadeDobj.visibility = "hide";
+		PPTSld.panelobj.visibility = "hide";
+		PPTSld.Fobj.visibility = "hide";
+		PPTSld.Bobj.visibility = "hide";
+		PPTSld.Eobj.visibility = "hide";
+	}
+	return true;
+}
+
+function overMe() {
+	this.bgColor = "blue";
+}
+
+function outMe() {
+	this.bgColor = "#AAAAAA"; 
+}
+
+function makeElement( whichEl, whichContainer ) {
+	if ( arguments.length == 1 ) {
+		whichContainer = PPTSld;
+	}
+	tmp = new Layer(100,whichContainer);
+	eval( whichEl + " = tmp" );
+	return eval(whichEl);
+}
+
+function initMe( obj, clr, text ) {
+	obj.bgColor = clr;
+//	obj.document.write("<a href='javascript:return false'>" + text + "</a>");
+	obj.document.write( "<font size=2 face=Arial " );
+	if ( !M_HasPrevSld() && (obj == PPTSld.Bobj )  ) {
+		obj.document.write( " color='#808080' " );
+	}
+	else {
+		obj.onmouseover = overMe;
+		obj.onmouseout = outMe;
+	}	
+	obj.document.write( " > &nbsp " + text +"</font> <layer top=0 left=0 width=100 height=40 ></layer>");
+	obj.document.close();
+	obj.captureEvents(Event.CLICK);
+	obj.color = "black";		
+}
+
+function createCM() {
+  if ( base.IsFullScrMode() ) {
+  	var clr = "#AAAAAA";
+	PPTSld.shadeUobj = makeElement("SHADEU");
+	PPTSld.shadeDobj = makeElement("SHADED");
+	PPTSld.panelobj = makeElement("PANEL");
+	PPTSld.stripUobj = makeElement("STRIPU");
+	PPTSld.stripDobj = makeElement("STRIPD");
+	PPTSld.shadeUobj.bgColor = "#BBBBBB";
+	PPTSld.shadeDobj.bgColor = "#888888";
+	PPTSld.stripUobj.bgColor = "#777777";
+	PPTSld.stripDobj.bgColor = "#CCCCCC";
+	PPTSld.panelobj.bgColor = clr;
+	PPTSld.Fobj = makeElement("Next");
+	PPTSld.Bobj = makeElement("Previous");
+	PPTSld.Eobj = makeElement("EndShow");
+	initMe( PPTSld.Fobj, clr, "Next" );
+	PPTSld.Fobj.onclick = M_GoNextSld;
+
+	initMe( PPTSld.Bobj, clr, "Previous" );
+	PPTSld.Bobj.onclick = M_GoPrevSld;
+
+	initMe( PPTSld.Eobj, clr, "End Show");
+	PPTSld.Eobj.onclick = base.CloseFullScreen;
+  }
+}
+
+function IsContextMenu() {
+	return (g_ctxmenu == 1)
+}
+var g_notesTable = new Array()
+var g_hiddenSlide = new Array()
+makeSlide( 0,1,1);
+makeSlide( 1,1,1);
+makeSlide( 2,1,1);
+makeSlide( 3,1,1);
+makeSlide( 4,1,1);
+makeSlide( 5,1,1);
+makeSlide( 6,1,1);
+makeSlide( 7,1,1);
+makeSlide( 8,1,1);
+makeSlide( 9,1,1);
+makeSlide( 10,1,1);
+makeSlide( 11,0,1);
+makeSlide( 12,0,1);
+makeSlide( 13,1,1);
+
+var END_SHOW_HREF         = "endshow.htm",
+    OUTLINE_EXPAND_HREF   = "outline_expanded.htm",
+    OUTLINE_COLLAPSE_HREF = "outline_collapsed.htm",
+    OUTLINE_NAVBAR_HREF  = "outline_navigation_bar.htm",
+    NAVBAR_HREF           = "navigation_bar.htm",
+    BLANK_NOTES_HREF	  = "blank_notes.htm",
+    NUM_VISIBLE_SLIDES    = 14,
+    SIMPLE_FRAMESET       = 0,
+    SLIDE_FRAME	        = "PPTSld",
+    NOTES_FRAME           = "PPTNts",
+    OUTLINE_FRAME         = "PPTOtl",
+    OUTLINE_NAVBAR_FRAME  = "PPTOtlNav",
+    NAVBAR_FRAME          = "PPTNav",
+	MAIN_FRAME			  = "MainFrame",
+	FS_NAVBAR_HREF		  = "fs_navigation_bar.htm",
+	isIEFiles 			= 2,
+	isNAVFiles 			= 8,
+	isFLATFiles 			= 16,
+	includeNotes			= 1,
+	PPTPRESENTATION     = 1;
+var  INITSLIDENUM   = 1;
+
+var EndSlideShow = 0;
+var g_outline_href = OUTLINE_COLLAPSE_HREF;	
+var g_fullscrMode = 0;	
+var FSWin = null;
+var gtmpstr = document.location.href;
+var g_baseURL = gtmpstr.substr(0, gtmpstr.lastIndexOf("/") ) + "/" + "webqtl_demo2.ppt_files";
+var g_showoutline = 1;
+var g_shownotes = includeNotes;
+var g_currentSlide = INITSLIDENUM, g_prevSlide = INITSLIDENUM;
+var saveFSSlideNum = saveTPSlideNum = g_currentSlide;
+var saveFSprevSlide = saveTPprevSlide = g_prevSlide;
+var g_slideType="ie";
+var appVer = navigator.appVersion;
+var msie = appVer.indexOf( "MSIE " ) + appVer.indexOf( "Internet Explorer " );
+var isnav = ( navigator.appName.indexOf( "Netscape" ) >= 0 );
+var msieWin31 = (appVer.indexOf( "Windows 3.1" ) > 0);
+var ver = 0;
+var g_done = 0;
+var g_prevotlobjidx = 0;
+var g_ShowFSDefault = 0;
+var g_lastVisibleSld = 1;
+var g_allHidden = false;
+function IsIE() {
+	return (msie >= 0 );
+}
+
+function IsNav() {
+	return (isnav);
+}
+var msiePos = appVer.indexOf( "MSIE " );
+var inexPos = appVer.indexOf( "Internet Explorer " );
+if ( msiePos >= 0 )
+  ver = parseFloat( appVer.substring( msiePos+5, appVer.indexOf ( ";", msiePos ) ) );
+else if( inexPos >= 0 )
+  ver=parseFloat( appVer.substring( inexPos+18, appVer.indexOf(";",inexPos) ) )
+else
+  ver = parseInt( appVer );
+
+//var g_supportsPPTHTML = 0; //!msieWin31 && ( ( msie >= 0 && ver >= 3.02 ) || ( msie < 0 && ver >= 3 ) );
+
+function GetCurrentSlideNum()
+{   
+  obj = GetHrefObj( g_currentSlide );
+  if ( GetHrefObj( g_currentSlide ).m_origVisibility == 1 )
+    return obj.m_slideIdx;
+  else   
+    return g_currentSlide;
+}
+
+function GetNumSlides()
+{
+  if ( GetHrefObj( g_currentSlide ).m_origVisibility == 1 )
+    return NUM_VISIBLE_SLIDES;
+  else
+    return g_docTable.length;
+}
+
+function GetHrefObj( slideIdx )
+{ return g_docTable[slideIdx - 1];
+}
+
+function GetSlideNum( slideHref )
+{
+  for (ii=0; ii<g_docTable.length; ii++) {
+    if ( g_docTable[ii].m_slideHref == slideHref )
+      return ii+1;
+  }
+  return 1;
+}
+
+function GoToNextSld()
+{   
+  targetIdx = g_currentSlide + 1;
+  if ( GetHrefObj( targetIdx-1 ).m_origVisibility == 0 ) {
+    if ( targetIdx<=g_docTable.length ) {
+      obj = GetHrefObj( targetIdx );
+      obj.m_visibility = 1;
+      GoToSld( obj.m_slideHref );
+    }
+  }
+  else {
+    obj = GetHrefObj( targetIdx );
+    while ( obj && ( obj.m_origVisibility == 0 ) && ( targetIdx<=g_docTable.length ) )
+      obj = GetHrefObj( targetIdx++ );
+    if( obj && obj.m_origVisibility )
+      GoToSld( obj.m_slideHref );
+  }
+}
+
+function GoToPrevSld()
+{
+  targetIdx = g_currentSlide - 1;
+  if ( targetIdx > 0 ) {
+    obj = GetHrefObj( targetIdx );
+    while ( ( obj.m_visibility == 0 ) && ( targetIdx>0 ) )
+      obj = GetHrefObj( targetIdx-- );
+    GoToSld( obj.m_slideHref );
+  }
+}
+
+function GoToLast()
+{
+  targetIdx = g_docTable.length;
+  if ( targetIdx != g_currentSlide )
+    GoToSld( GetHrefObj( targetIdx ).m_slideHref );
+}
+
+function GoToFirst()
+{ GoToSld( GetHrefObj(1).m_slideHref );
+}
+
+function highlite() {
+	if ( IsFullScrMode() )
+		return;
+	index = GetCurrentSlideNum();
+	if ( !frames[MAIN_FRAME].frames[OUTLINE_FRAME] )
+		return;
+	if ( msie < 0 ) {
+		if ( g_prevotlobjidx != 0 ) {
+			eval( "otlobj = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.LAYERID" + g_prevotlobjidx );
+			otlobj.hidden = true;
+		}
+		else
+			index = GetCurrentSlideNum();
+		eval( "otlobj = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.LAYERID" + index );
+		otlobj.hidden = false;
+	
+		g_prevotlobjidx = index;
+		
+		return;
+	}
+	if ( !g_showoutline )
+		return;
+		
+		backclr = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.body.bgColor;
+		textclr = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.body.text;
+	if ( g_prevotlobjidx != 0 ) {
+		eval( "otlobj = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.all.p" + g_prevotlobjidx );
+		otlobj.style.backgroundColor = backclr;
+		otlobj.style.color = textclr;
+		otlobj.all.AREF.style.color = textclr;
+	}
+	else
+		index = GetCurrentSlideNum();
+	eval( "otlobj = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.all.p" + index );
+	otlobj.style.backgroundColor = textclr;
+	otlobj.style.color = backclr;
+	otlobj.all.AREF.style.color = backclr;
+	g_prevotlobjidx = index;
+}
+
+function ChangeFrame( frame, href )
+{
+if ( IsFramesMode() ) {
+  if ( NAVBAR_FRAME == frame || OUTLINE_NAVBAR_FRAME ==  frame ) {
+	    frames[frame].location.replace(href);
+  }
+  else if( ! ( ( OUTLINE_FRAME == frame && !g_showoutline)  || (NOTES_FRAME == frame && !g_shownotes ) ) ){
+	    frames[MAIN_FRAME].frames[frame].location.href = href;
+  }
+ }
+ else {
+ 	if ( frame == NAVBAR_FRAME || frame == SLIDE_FRAME ) {
+ 	  if( frame == NAVBAR_FRAME ) {
+ 	  	 href = FS_NAVBAR_HREF;
+ 	  	
+ 	  }	    
+ 	  if( frame == NAVBAR_FRAME ) 
+	      window.frames[frame].location.replace(href);
+	 else
+	      window.frames[frame].location.href = href;
+ 	}
+ }
+  
+}
+
+function shutEventPropagation() {
+	if ( IsNav() )
+		return;
+		
+	var slideFrame;
+	if ( IsFramesMode() )
+		slideFrame = frames[MAIN_FRAME].frames[SLIDE_FRAME];
+	else
+		slideFrame = window.frames[SLIDE_FRAME];
+	if ( slideFrame.event ) 
+		slideFrame.event.cancelBubble=true;
+}
+				
+function GoToSld( slideHref )
+{
+  shutEventPropagation();
+  if ( slideHref != GetHrefObj( g_currentSlide ).m_slideHref || g_slideType != GetHrefObj( g_currentSlide ).type) {
+    g_prevSlide = g_currentSlide;
+    g_currentSlide = GetSlideNum( slideHref );
+	g_slideType = GetHrefObj( g_currentSlide ).type;
+    obj = GetHrefObj( g_currentSlide );
+    obj.m_visibility = 1;
+    ChangeFrame( SLIDE_FRAME, slideHref );
+    if( !SIMPLE_FRAMESET )
+      ChangeFrame( NOTES_FRAME, obj.m_notesHref );
+    ChangeFrame( NAVBAR_FRAME, NAVBAR_HREF );
+	    
+  }
+}
+
+function PrevSldViewed()
+{ GoToSld( GetHrefObj( g_prevSlide ).m_slideHref );
+}
+
+function NoHref() {}
+
+function ExpandOutline( )
+{ 
+ g_outline_href = OUTLINE_EXPAND_HREF;
+ ChangeFrame( OUTLINE_FRAME, OUTLINE_EXPAND_HREF );
+ frames[OUTLINE_NAVBAR_FRAME].location.replace( OUTLINE_NAVBAR_HREF);
+}
+
+function CollapseOutline()
+{ 
+ g_outline_href = OUTLINE_COLLAPSE_HREF;
+ ChangeFrame( OUTLINE_FRAME, OUTLINE_COLLAPSE_HREF );
+ frames[OUTLINE_NAVBAR_FRAME].location.replace( OUTLINE_NAVBAR_HREF);
+ }
+
+function SlideUpdated( id )
+{
+  if ( id != GetHrefObj( g_currentSlide ).m_slideHref )  {
+    g_prevSlide = g_currentSlide;
+    g_currentSlide = GetSlideNum( id );
+    obj = GetHrefObj( g_currentSlide );
+    if( !SIMPLE_FRAMESET )
+      ChangeFrame( NOTES_FRAME, obj.m_notesHref );
+    ChangeFrame( NAVBAR_FRAME, NAVBAR_HREF );
+  }
+}
+
+function hrefList( slideHref, notesHref, visible, slideIdx, type )
+{
+  this.m_slideHref  = slideHref;
+  this.m_notesHref  = notesHref;
+  this.m_navbarHref = NAVBAR_HREF;
+  this.m_origVisibility = visible;
+  this.m_visibility = visible;
+  this.m_slideIdx = slideIdx;
+  this.type = type;
+}
+
+function IsFullScrMode() {
+	return g_fullscrMode;
+}
+
+
+function IsFramesMode() {
+	return (1 - g_fullscrMode);
+}
+
+function SldUpdated( id )
+{
+  if ( ( id != GetHrefObj( g_currentSlide ).m_slideHref )  || ( g_currentSlide == g_lastVisibleSld ) ){
+    g_prevSlide = g_currentSlide;
+    g_currentSlide = GetSlideNum( id );
+    obj = GetHrefObj( g_currentSlide );
+    if( !SIMPLE_FRAMESET )
+      ChangeFrame( NOTES_FRAME, obj.m_notesHref );
+    ChangeFrame( NAVBAR_FRAME, NAVBAR_HREF );
+  }
+}
+
+function ToggleOutline() {
+	g_showoutline = 1 - g_showoutline;
+	writeMyFrame();
+}
+
+function ShowHideNotes() {
+	g_shownotes = 1 - g_shownotes;
+	writeMyFrame();
+}
+
+function writeMyFrame() {
+		SetFSMode(0);
+		obj = frames[MAIN_FRAME];
+		
+		var curslide = g_baseURL + "/" +  GetHrefObj( g_currentSlide ).m_slideHref;
+		var curnotes = g_baseURL + "/" +  GetHrefObj( g_currentSlide ).m_notesHref;
+		var otlhref = g_baseURL + "/" +  g_outline_href;
+		if ( msie < 0 ) {			
+		if ( ! g_showoutline && g_shownotes ) {
+			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
+				<frameset rows=\"*,20%\" id=\"frameset2\" > \
+				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
+				<frame src=\"' + curnotes + '\" name=PPTNts marginheight=0 marginwidth=0> \
+				</frameset> </html>' );
+		}
+		else if( g_showoutline && g_shownotes  ){
+			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
+				<frameset cols=\"20%,*\" id=\"frameset1\"> \
+				<frame src=\"' + otlhref + '\" name=PPTOtl> \
+				<frameset rows=\"*,20%\" id=\"frameset2\" > \
+				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
+				<frame src=\"' + curnotes + '\" name=PPTNts marginheight=0 marginwidth=0> \
+				</frameset> </frameset></html>' );
+		}		
+		else if ( !g_shownotes && !g_showoutline ) {
+			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
+				<frameset rows="*,0" frameborder=0 > \
+				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
+				</frameset> </html>' );
+		}
+		else if( !g_shownotes  && g_showoutline ) {
+			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
+				<frameset cols=\"20%,*\" id=\"frameset1\"> \
+				<frame src=\"' + otlhref + '\" name=PPTOtl> \
+				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
+				</frameset></html>' );
+		}
+		obj.document.close();
+		}
+		else {
+			if ( g_showoutline ) {
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001.htm
new file mode 100755
index 00000000..11938baa
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: The GeneNetwork and WebQTL : PART 2    link to www.genenetwork.org">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+gId="slide0001.htm"
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+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:3.53%;left:2.11%;width:96.15%;height:18.19%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-277 0 -1";mso-margin-left-alt:232;
+mso-text-indent-alt:0;position:absolute;top:11.65%;left:.96%;width:98.2%;
+height:73.78%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
+style='font-size:73%'>The GeneNetwork and WebQTL : PART 2<span
+style="mso-spacerun: yes">&nbsp;&nbsp; </span><br>
+</span></span><span
+style='position:absolute;top:48.68%;left:4.34%;width:95.23%'><span
+style='font-size:73%'>link to www.genenetwork.org</span><span style='font-size:
+73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></div>
+</div>
+<div style='position:absolute;top:24.02%;left:5.82%;width:54.03%;height:68.55%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='position:absolute;top:0%;left:3.67%;width:96.32%;
+height:61.34%'>
+<div style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
+56;position:absolute;top:0%;left:0%;width:100.0%;height:51.68%'><span
+style='position:absolute;top:0%;left:0%;width:89.05%'><span style='mso-special-format:
+nobullet;display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:
+99%'>l</span><span style='font-size:94%;color:#E9EB5D;mso-color-index:3'>Part
+1. How to study </span></span><span style='position:absolute;top:23.57%;
+left:9.66%;width:79.13%'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>expression variation </span></span><span style='position:absolute;
+top:47.15%;left:9.66%;width:90.33%'><span style='font-size:94%;color:#E9EB5D;
+mso-color-index:3'>and genetic correlation </span></span><span
+style='position:absolute;top:70.73%;left:9.66%;width:79.13%'><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'>(slides 2&#8211;17)<br>
+</span></span></div>
+<div style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
+56;position:absolute;top:60.5%;left:0%;width:93.63%;height:39.91%'><span
+style='position:absolute;top:0%;left:0%;width:95.1%'><span style='mso-special-format:
+nobullet;display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:
+99%'>l</span><span style='font-size:94%;color:#E9EB5D;mso-color-index:3'>Part
+2. Discovering </span></span><span style='position:absolute;top:30.52%;
+left:10.32%;width:89.67%'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>upstream modulators </span></span><span style='position:absolute;top:61.05%;
+left:10.32%;width:84.51%'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>(slides 18&#8211;29)</span></span></div>
+</div>
+</div>
+<img border=0 src="slide0001_image001.png" style='position:absolute;top:17.84%;
+left:74.17%;width:23.57%;height:64.31%'>
+<div class=O style='position:absolute;top:75.44%;left:74.56%;width:10.46%;
+height:14.48%'>
+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:42.68%'><span
+style='font-family:"Arial Rounded MT Bold";font-size:233%;color:#6E6E6E'>RNA</span><span
+style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
+display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:45.12%;left:0%;width:82.27%;height:54.87%'><span
+style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:82.15%;left:4.1%;width:96.15%;height:18.19%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'></div>
+<img border=0 src="slide0001_image002.png" style='position:absolute;top:50.53%;
+left:48.74%;width:25.56%;height:13.07%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Part 2: Discovering
+  upstream modulators and quantitative trait loci (QTLs). A quantitative trait
+  locus is a chromosomal region that harbors one or a few polymorphic gene loci
+  that influence a trait. We are going to be looking for QTLs that modulate the
+  steady state expression level of App in the adult mouse forebrain.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001_image001.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001_image001.png
new file mode 100755
index 00000000..a1cb20e4
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001_image002.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001_image002.png
new file mode 100755
index 00000000..e06bd0db
--- /dev/null
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001_notes_pane.htm
new file mode 100755
index 00000000..9e0445f3
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0001_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Part 2: Discovering
+  upstream modulators and quantitative trait loci (QTLs). A quantitative trait
+  locus is a chromosomal region that harbors one or a few polymorphic gene loci
+  that influence a trait. We are going to be looking for QTLs that modulate the
+  steady state expression level of App in the adult mouse forebrain.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0002.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0002.htm
new file mode 100755
index 00000000..b40dd6e1
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0002.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master05_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
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+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
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+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
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+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master05_background.png" v:shapes="_x0000_s3075"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div class=O style='position:absolute;top:92.93%;left:8.74%;width:18.67%;
+height:5.83%'>
+<div style='mso-line-spacing:"-134 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:48.48%'><span
+style='font-family:Times;font-size:117%;color:white;display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-134 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:51.51%;left:0%;width:100.0%;height:48.48%'><span
+style='font-family:Times;font-size:117%;color:white;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+<div class=O style='position:absolute;top:92.93%;left:35.49%;width:29.4%;
+height:5.83%'>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:0%;width:100.0%;
+height:48.48%'><span style='font-family:Times;font-size:117%;color:white;
+display:none'><br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:51.51%;left:0%;width:100.0%;
+height:48.48%'><span style='font-family:Times;font-size:117%;color:white;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:2.12%;left:-5.43%;width:105.96%;height:11.13%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:0%;left:0%;width:100.0%;height:92.06%'>
+<div style='text-align:center;mso-line-spacing:"-240 0 0";mso-margin-left-alt:
+16;mso-text-indent-alt:16;position:absolute;top:0%;left:0%;width:100.0%;
+height:65.51%'><span style='font-family:Arial;font-size:267%;color:#E9EB5D'>How
+to make recombinant inbred strains (RI)</span><span style='font-family:Arial;
+font-size:150%;color:aqua;display:none'><br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-160 0 0";mso-margin-left-alt:
+16;mso-text-indent-alt:16;position:absolute;top:62.06%;left:6.37%;width:87.37%;
+height:37.93%'><span style='font-family:Arial;font-size:150%;color:aqua;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<img border=0 src="slide0002_image003.png" style='position:absolute;top:28.79%;
+left:45.43%;width:18.14%;height:1.06%'><img border=0
+src="slide0002_image004.png" style='position:absolute;top:20.31%;left:28.21%;
+width:1.98%;height:11.83%'>
+<div style='position:absolute;top:15.01%;left:25.03%;width:19.47%;height:9.71%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:9.09%;left:6.8%;width:93.19%;
+height:81.81%'>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>C57BL/6J (B)<br>
+</span></div>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:51.11%;left:0%;width:83.21%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+</div>
+<img border=0 src="slide0002_image005.png" style='position:absolute;top:20.31%;
+left:30.46%;width:1.98%;height:11.83%'>
+<div style='position:absolute;top:15.01%;left:62.25%;width:16.55%;height:9.71%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:9.09%;left:8.0%;width:92.8%;
+height:81.81%'>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>DBA/2J (D)<br>
+</span></div>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:51.11%;left:0%;width:82.75%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+</div>
+<img border=0 src="slide0002_image006.png" style='position:absolute;top:20.31%;
+left:66.62%;width:4.23%;height:11.83%'><img border=0
+src="slide0002_image007.png" style='position:absolute;top:35.51%;left:23.97%;
+width:50.86%;height:1.23%'><img border=0 src="slide0002_image008.png"
+style='position:absolute;top:35.68%;left:24.1%;width:.66%;height:4.06%'><img
+border=0 src="slide0002_image009.png" style='position:absolute;top:35.68%;
+left:40.92%;width:.52%;height:4.06%'><img border=0 src="slide0002_image010.png"
+style='position:absolute;top:35.68%;left:57.61%;width:.52%;height:4.06%'><img
+border=0 src="slide0002_image011.png" style='position:absolute;top:35.68%;
+left:74.3%;width:.52%;height:3.88%'>
+<div style='position:absolute;top:42.75%;left:5.69%;width:6.49%;height:12.36%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:8.57%;left:20.4%;width:73.46%;
+height:84.28%'>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:49.15%'><span
+style='font-family:Arial;font-size:200%;color:#FFFF99'><b>F1<br>
+</b></span></div>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:50.84%;left:0%;width:83.33%;height:49.15%'><span
+style='font-family:Arial;font-size:200%;color:#FFFF99;mso-special-format:lastCR;
+display:none'><b><br>
+</b></span></div>
+</div>
+</div>
+<img border=0 src="slide0002_image012.png" style='position:absolute;top:39.92%;
+left:22.25%;width:4.23%;height:11.83%'><img border=0
+src="slide0002_image013.png" style='position:absolute;top:39.92%;left:38.94%;
+width:4.23%;height:11.83%'><img border=0 src="slide0002_image014.png"
+style='position:absolute;top:39.92%;left:55.62%;width:4.23%;height:11.83%'><img
+border=0 src="slide0002_image015.png" style='position:absolute;top:39.39%;
+left:72.84%;width:4.23%;height:11.83%'><img border=0
+src="slide0002_image016.png" style='position:absolute;top:43.46%;left:43.97%;
+width:11.12%;height:3.53%'><img border=0 src="slide0002_image017.png"
+style='position:absolute;top:60.95%;left:20.66%;width:9.8%;height:3.53%'>
+<div style='position:absolute;top:71.73%;left:58.41%;width:20.26%;height:26.67%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:12.58%;left:6.53%;width:88.23%;
+height:83.44%'>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:0%;width:100.0%;
+height:69.84%'><span style='position:absolute;top:0%;left:0%;width:99.25%'><span
+style='font-family:Arial;font-size:117%;color:#FFFF99'><b>20 generations </b></span></span><span
+style='position:absolute;top:39.77%;left:0%;width:100.0%'><span
+style='font-family:Arial;font-size:117%;color:#FFFF99'><b>brother-sister </b></span></span><span
+style='position:absolute;top:80.68%;left:0%;width:99.25%'><span
+style='font-family:Arial;font-size:117%;color:#FFFF99'><b>matings</b></span><span
+style='font-family:Arial;font-size:233%;color:#FFFF99;display:none'><b><br>
+</b></span></span></div>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:73.8%;left:0%;width:99.25%;
+height:26.98%'><span style='font-family:Arial;font-size:233%;color:#FFFF99;
+mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</div>
+</div>
+<img border=0 src="slide0002_image018.png" style='position:absolute;top:60.95%;
+left:50.72%;width:9.93%;height:3.53%'><img border=0 src="slide0002_image019.png"
+style='position:absolute;top:62.72%;left:54.03%;width:4.37%;height:28.97%'><img
+border=0 src="slide0002_image020.png" style='position:absolute;top:61.13%;
+left:79.86%;width:10.86%;height:3.53%'><img border=0
+src="slide0002_image021.png" style='position:absolute;top:62.36%;left:83.97%;
+width:4.1%;height:28.79%'>
+<div style='position:absolute;top:92.93%;left:21.72%;width:9.27%;height:9.71%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:9.09%;left:12.85%;width:85.71%;
+height:81.81%'>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>BXD1</span><span
+style='font-family:Arial;font-size:150%;color:#484848;display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:51.11%;left:0%;width:83.33%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#484848;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:92.75%;left:51.78%;width:9.27%;height:9.71%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:9.09%;left:12.85%;width:85.71%;
+height:81.81%'>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>BXD2<br>
+</span></div>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:51.11%;left:0%;width:83.33%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:92.93%;left:80.79%;width:10.99%;height:5.65%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;position:absolute;top:15.62%;left:12.04%;width:87.95%;
+height:68.75%'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>BXD80</span></div>
+</div>
+<div style='position:absolute;top:90.45%;left:64.1%;width:17.74%;height:17.49%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:6.06%;left:7.46%;width:92.53%;
+height:88.88%'>
+<div style='mso-line-spacing:"-341 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:48.86%'><span
+style='font-family:Arial;font-size:300%;color:#FFFF99'>+ � +<br>
+</span></div>
+<div style='mso-line-spacing:"-341 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:50.0%;left:0%;width:83.87%;height:48.86%'><span
+style='font-family:Arial;font-size:300%;color:#FFFF99;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:62.89%;left:4.9%;width:6.49%;height:12.36%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:7.14%;left:20.4%;width:73.46%;
+height:84.28%'>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:49.15%'><span
+style='font-family:Arial;font-size:200%;color:#FFFF99'><b>F2<br>
+</b></span></div>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:50.84%;left:0%;width:83.33%;height:49.15%'><span
+style='font-family:Arial;font-size:200%;color:#FFFF99;mso-special-format:lastCR;
+display:none'><b><br>
+</b></span></div>
+</div>
+</div>
+<img border=0 src="slide0002_image022.png" style='position:absolute;top:54.24%;
+left:18.01%;width:75.62%;height:1.06%'><img border=0
+src="slide0002_image023.png" style='position:absolute;top:54.06%;left:17.88%;
+width:.66%;height:3.88%'><img border=0 src="slide0002_image024.png"
+style='position:absolute;top:54.24%;left:32.45%;width:.52%;height:3.88%'><img
+border=0 src="slide0002_image025.png" style='position:absolute;top:54.24%;
+left:48.07%;width:.52%;height:4.06%'><img border=0 src="slide0002_image026.png"
+style='position:absolute;top:54.24%;left:62.78%;width:.52%;height:4.06%'><img
+border=0 src="slide0002_image027.png" style='position:absolute;top:54.24%;
+left:77.74%;width:.52%;height:4.06%'><img border=0 src="slide0002_image028.png"
+style='position:absolute;top:54.59%;left:92.71%;width:.52%;height:3.71%'><img
+border=0 src="slide0002_image029.png" style='position:absolute;top:44.87%;
+left:49.13%;width:.79%;height:10.07%'><img border=0 src="slide0002_image030.png"
+style='position:absolute;top:57.59%;left:15.89%;width:4.23%;height:11.83%'><img
+border=0 src="slide0002_image031.png" style='position:absolute;top:57.59%;
+left:30.86%;width:4.37%;height:11.83%'><img border=0
+src="slide0002_image032.png" style='position:absolute;top:57.59%;left:46.35%;
+width:4.23%;height:11.83%'><img border=0 src="slide0002_image033.png"
+style='position:absolute;top:57.59%;left:60.92%;width:4.23%;height:11.83%'><img
+border=0 src="slide0002_image034.png" style='position:absolute;top:57.59%;
+left:75.62%;width:4.23%;height:11.83%'><img border=0
+src="slide0002_image035.png" style='position:absolute;top:57.59%;left:90.86%;
+width:4.23%;height:11.83%'><img border=0 src="slide0002_image036.png"
+style='position:absolute;top:84.09%;left:56.42%;width:1.98%;height:1.41%'><img
+border=0 src="slide0002_image037.png" style='position:absolute;top:80.21%;
+left:25.96%;width:1.98%;height:11.83%'><img border=0
+src="slide0002_image038.png" style='position:absolute;top:84.98%;left:86.09%;
+width:1.85%;height:2.12%'>
+<div style='position:absolute;top:75.61%;left:1.58%;width:13.9%;height:13.78%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:7.69%;left:.95%;width:99.04%;
+height:85.89%'>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:7.69%;width:83.65%;
+height:32.83%'><span style='font-family:Arial;font-size:150%;color:#FFFF99'><b>BXD
+RI<br>
+</b></span></div>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:32.83%;left:0%;width:100.0%;
+height:32.83%'><span style='font-family:Arial;font-size:150%;color:#FFFF99'><b>Strain
+set<br>
+</b></span></div>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:67.16%;left:7.69%;width:83.65%;
+height:32.83%'><span style='font-family:Arial;font-size:150%;color:#FFFF99;
+mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</div>
+</div>
+<img border=0 src="slide0002_image039.png" style='position:absolute;top:12.36%;
+left:14.17%;width:10.59%;height:6.36%'><img border=0
+src="slide0002_image040.png" style='position:absolute;top:10.6%;left:76.42%;
+width:14.3%;height:8.3%'>
+<div style='position:absolute;top:20.84%;left:17.48%;width:9.53%;height:13.78%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:7.69%;left:6.94%;width:88.88%;
+height:85.89%'>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:7.81%;width:82.81%;
+height:32.83%'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>fully<br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:32.83%;left:0%;width:100.0%;
+height:32.83%'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>inbred<br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:67.16%;left:7.81%;width:82.81%;
+height:32.83%'><span style='font-family:Arial;font-size:150%;color:#FFFF99;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:38.16%;left:2.91%;width:11.78%;height:9.71%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:9.09%;left:3.37%;width:94.38%;
+height:81.81%'>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:0%;width:100.0%;
+height:48.88%'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>isogenic<br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:51.11%;left:8.33%;width:83.33%;
+height:48.88%'><span style='font-family:Arial;font-size:150%;color:#FFFF99;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:54.41%;left:1.85%;width:12.18%;height:13.78%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:7.69%;left:2.17%;width:95.65%;
+height:85.89%'>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:7.95%;width:84.09%;
+height:32.83%'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>hetero-<br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:32.83%;left:0%;width:100.0%;
+height:32.83%'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>geneous<br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:67.16%;left:7.95%;width:84.09%;
+height:32.83%'><span style='font-family:Arial;font-size:150%;color:#FFFF99;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:74.91%;left:29.0%;width:21.98%;height:21.73%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:4.06%;left:5.42%;width:89.15%;
+height:91.86%'>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:0%;width:100.0%;
+height:79.64%'><span style='position:absolute;top:0%;left:.67%;width:99.32%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>Recombined </span></span><span
+style='position:absolute;top:25.55%;left:.67%;width:99.32%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>chromosomes </span></span><span
+style='position:absolute;top:51.11%;left:0%;width:100.0%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>are needed for </span></span><span
+style='position:absolute;top:75.55%;left:.67%;width:99.32%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>mapping<br>
+</span></span></div>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:80.53%;left:.67%;width:99.32%;
+height:19.46%'><span style='font-family:Arial;font-size:150%;color:#FFFF99;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:10.24%;left:25.56%;width:10.46%;height:9.71%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:9.09%;left:12.65%;width:87.34%;
+height:81.81%'>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>female<br>
+</span></div>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:51.11%;left:0%;width:84.05%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:10.24%;left:64.5%;width:7.94%;height:9.71%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:9.09%;left:15.0%;width:83.33%;
+height:81.81%'>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99'>male<br>
+</span></div>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:51.11%;left:0%;width:84.0%;height:48.88%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:30.56%;left:78.01%;width:19.47%;height:9.71%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:16.36%;left:6.12%;width:93.19%;
+height:74.54%'>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:41.46%'><span
+style='font-family:Arial;font-size:117%;color:#FFFF99'>chromosome pair</span><span
+style='font-family:Arial;font-size:150%;color:#FFFF99;display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:46.34%;left:0%;width:83.21%;height:53.65%'><span
+style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+</div>
+<img border=0 src="slide0002_image041.png" style='position:absolute;top:31.09%;
+left:65.82%;width:12.84%;height:2.82%'>
+<div style='position:absolute;top:86.21%;left:3.97%;width:9.8%;height:14.13%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:5.0%;left:5.4%;width:90.54%;
+height:87.5%'>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:8.95%;width:82.08%;
+height:24.28%'><span style='font-family:Arial;font-size:117%;color:#E9EB5D'>Inbred<br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:25.71%;left:0%;width:100.0%;
+height:24.28%'><span style='font-family:Arial;font-size:117%;color:#E9EB5D'>Isogenic<br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:50.0%;left:4.47%;width:89.55%;
+height:24.28%'><span style='font-family:Arial;font-size:117%;color:#E9EB5D'>siblings</span><span
+style='font-family:Arial;font-size:117%;color:aqua;display:none'><br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:75.71%;left:8.95%;width:82.08%;
+height:24.28%'><span style='font-family:Arial;font-size:117%;color:aqua;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<img border=0 src="slide0002_image042.png" style='position:absolute;top:79.32%;
+left:83.84%;width:1.98%;height:11.83%'><img border=0
+src="slide0002_image043.png" style='position:absolute;top:84.8%;left:83.7%;
+width:1.85%;height:2.12%'><img border=0 src="slide0002_image044.png"
+style='position:absolute;top:79.85%;left:53.5%;width:1.98%;height:11.83%'><img
+border=0 src="slide0002_image045.png" style='position:absolute;top:83.92%;
+left:53.5%;width:1.98%;height:1.41%'><img border=0 src="slide0002_image046.png"
+style='position:absolute;top:80.21%;left:23.44%;width:1.98%;height:11.83%'>
+<div style='position:absolute;top:18.72%;left:43.04%;width:13.77%;height:9.54%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='mso-line-spacing:"-341 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;position:absolute;top:11.11%;left:9.61%;width:90.38%;
+height:79.62%'><span style='font-family:Arial;font-size:300%;color:aqua'>B</span><span
+style='font-family:Arial;font-size:300%;color:#FFFF99'>X</span><span
+style='font-family:Arial;font-size:300%;color:#FF1911'>D</span></div>
+</div>
+<img border=0 src="slide0002_image047.png" style='position:absolute;top:27.2%;
+left:32.98%;width:31.39%;height:4.06%'><img border=0
+src="slide0002_image048.png" style='position:absolute;top:66.25%;left:60.92%;
+width:1.98%;height:3.18%'><img border=0 src="slide0002_image049.png"
+style='position:absolute;top:64.31%;left:15.89%;width:1.98%;height:5.3%'><img
+border=0 src="slide0002_image050.png" style='position:absolute;top:57.59%;
+left:75.62%;width:1.98%;height:5.65%'><img border=0 src="slide0002_image051.png"
+style='position:absolute;top:28.44%;left:48.87%;width:.92%;height:8.12%'><img
+border=0 src="slide0002_image052.png" style='position:absolute;top:62.19%;
+left:23.84%;width:3.57%;height:16.96%'><img border=0
+src="slide0002_image053.png" style='position:absolute;top:61.48%;left:63.17%;
+width:1.98%;height:8.12%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>The next few slides
+  provide a short introduction to mapping the loci that are responsible for
+  variation in a trait such as App expression level. These modulatory regions
+  of the genome are sometimes called quantitative trait loci or QTLs. You may
+  want to do some independent reading on this topic if this is your first
+  exposure to QTL analysis.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>The genetic reference
+  population (GRP) of BXD recombinant inbred strains were originally generated
+  about 25 years ago by Benjamin Taylor at The Jackson Laboratory. He crossed
+  female C57BL/6J mice with male DBA/2J mice to generate the F1 and F2 progeny.
+  At the bottom of this slide we have schematized one chromosome pair from
+  three of the BXD RI strains.<span style="mso-spacerun: yes">&nbsp; </span>The
+  dashed vertical lines that lead to the final BXD RI lines involve 21 full sib
+  matings (about 7 years of breeding). Some lines die out during inbreeding.
+  For example, there is no longer any BXD3 strain.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>1. Over the last decade,
+  our group (Lu Lu and Rob Williams) and Jeremy Peirce and Lee Silver at
+  Princeton have enlarged Ben Taylor�s set. There are now just over 80 BXD
+  strains. They have all been genotyped using about 13,700 markers (SNPs and
+  microsatellites). These markers are used to define the �blue� and �red�
+  regions of the chromosomes as shown in the figure above.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>2. Chromosomes of RI GRPs
+  usually have about 4 times as many recombinations as those of F2 animals.
+  However, unlike an F2, both chromosomes of an RI are identical. Therefore, 50
+  RI strains contain as many recombinations as 100 F2 animals.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>3. BXD43 through BXD100
+  were generated using a special method that resulted in a further doubling of
+  the average recombination density per chromosome. The entire set of 80 BXDs
+  therefore contains as many recombinations as about 260 F2 animals.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
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new file mode 100755
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new file mode 100755
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new file mode 100755
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new file mode 100755
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new file mode 100755
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0002_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0002_notes_pane.htm
new file mode 100755
index 00000000..67653ac4
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0002_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The next few slides
+  provide a short introduction to mapping the loci that are responsible for
+  variation in a trait such as App expression level. These modulatory regions
+  of the genome are sometimes called quantitative trait loci or QTLs. You may
+  want to do some independent reading on this topic if this is your first
+  exposure to QTL analysis.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The genetic reference
+  population (GRP) of BXD recombinant inbred strains were originally generated
+  about 25 years ago by Benjamin Taylor at The Jackson Laboratory. He crossed
+  female C57BL/6J mice with male DBA/2J mice to generate the F1 and F2 progeny.
+  At the bottom of this slide we have schematized one chromosome pair from
+  three of the BXD RI strains.<span style="mso-spacerun: yes">&nbsp; </span>The
+  dashed vertical lines that lead to the final BXD RI lines involve 21 full sib
+  matings (about 7 years of breeding). Some lines die out during inbreeding.
+  For example, there is no longer any BXD3 strain.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>1. Over the last decade,
+  our group (Lu Lu and Rob Williams) and Jeremy Peirce and Lee Silver at
+  Princeton have enlarged Ben Taylor�s set. There are now just over 80 BXD
+  strains. They have all been genotyped using about 13,700 markers (SNPs and
+  microsatellites). These markers are used to define the �blue� and �red�
+  regions of the chromosomes as shown in the figure above.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. Chromosomes of RI GRPs
+  usually have about 4 times as many recombinations as those of F2 animals.
+  However, unlike an F2, both chromosomes of an RI are identical. Therefore, 50
+  RI strains contain as many recombinations as 100 F2 animals.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3. BXD43 through BXD100
+  were generated using a special method that resulted in a further doubling of
+  the average recombination density per chromosome. The entire set of 80 BXDs
+  therefore contains as many recombinations as about 260 F2 animals.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0003.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0003.htm
new file mode 100755
index 00000000..2c4a0620
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0003.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0003.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
+border=0 src="slide0003_image054.png" style='position:absolute;top:40.45%;
+left:73.24%;width:14.56%;height:5.3%'>
+<div class=O style='position:absolute;top:40.81%;left:74.56%;width:11.92%;
+height:7.24%'>
+<div style='mso-line-spacing:"-126 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:60.97%'><span
+style='font-family:Gadget;font-size:150%;color:white'>aa<br>
+</span></div>
+<div style='mso-line-spacing:"-126 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:41.46%;left:0%;width:100.0%;height:60.97%'><span
+style='font-family:Gadget;font-size:150%;color:white;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+<img border=0 src="slide0003_image055.png" style='position:absolute;top:16.6%;
+left:73.24%;width:14.56%;height:5.3%'>
+<div class=O style='position:absolute;top:16.96%;left:74.56%;width:11.92%;
+height:7.24%'>
+<div style='mso-line-spacing:"-126 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:60.97%'><span
+style='font-family:Gadget;font-size:150%;color:white'>aaaa<br>
+</span></div>
+<div style='mso-line-spacing:"-126 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:41.46%;left:0%;width:100.0%;height:60.97%'><span
+style='font-family:Gadget;font-size:150%;color:white;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:20.31%;left:71.65%;width:25.96%;height:19.43%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:10.0%;left:5.1%;width:95.4%;
+height:84.54%'>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:0%;left:0%;width:100.0%;height:45.16%'><span
+style='font-size:267%;color:#E2EBF0'>D2 strain</span><span style='font-family:
+Palatino;font-size:333%;color:#FBFDB8;display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:49.46%;left:0%;width:88.77%;height:50.53%'><span
+style='font-family:Palatino;font-size:333%;color:#FBFDB8;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:43.81%;left:71.65%;width:25.56%;height:19.43%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:10.9%;left:5.18%;width:94.81%;
+height:84.54%'>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:0%;left:0%;width:100.0%;height:45.16%'><span
+style='font-size:267%;color:#F6BF69'>B6 strain</span><span style='font-family:
+Palatino;font-size:333%;color:#F6BF69;display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:48.38%;left:0%;width:87.43%;height:50.53%'><span
+style='font-family:Palatino;font-size:333%;color:#F6BF69;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<img border=0 src="slide0003_image056.png" style='position:absolute;top:17.31%;
+left:31.25%;width:1.32%;height:42.22%'><img border=0
+src="slide0003_image057.png" style='position:absolute;top:40.63%;left:31.39%;
+width:39.86%;height:3.53%'>
+<div style='position:absolute;top:20.67%;left:38.27%;width:30.19%;height:26.32%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:6.04%;left:4.38%;width:92.1%;
+height:89.93%'>
+<div style='mso-line-spacing:"-320 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:0%;left:0%;width:100.0%;height:58.2%'><span
+style='position:absolute;top:0%;left:0%;width:100.0%'><span style='font-size:
+233%;color:#E9EB5D'><i>amount of </i></span></span><span style='position:absolute;
+top:53.84%;left:0%;width:100.0%'><span style='font-size:233%;color:#E9EB5D'><i>transcript</i></span><span
+style='font-family:Palatino;font-size:367%;color:#E9EB5D;display:none'><br>
+</span></span></div>
+<div style='mso-line-spacing:"-422 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:61.19%;left:0%;width:100.0%;height:38.8%'><span
+style='font-family:Palatino;font-size:367%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:6.0%;left:72.45%;width:21.05%;height:19.43%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:10.0%;left:6.28%;width:88.67%;
+height:84.54%'>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:0%;left:0%;width:100.0%;height:45.16%'><span
+style='font-size:267%;color:white'>4 </span><span style='font-size:233%;
+color:white'>units</span><span style='font-family:Palatino;font-size:333%;
+color:#E9EB5D;display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:49.46%;left:0%;width:100.0%;height:50.53%'><span
+style='font-family:Palatino;font-size:333%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:29.5%;left:72.45%;width:21.05%;height:19.43%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:10.9%;left:6.28%;width:88.67%;
+height:84.54%'>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:0%;left:0%;width:100.0%;height:45.16%'><span
+style='font-size:267%;color:white'>2</span><span style='font-size:233%;
+color:white'> units</span><span style='font-family:Palatino;font-size:333%;
+color:#E9EB5D;display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:48.38%;left:0%;width:100.0%;height:50.53%'><span
+style='font-family:Palatino;font-size:333%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<img border=0 src="slide0003_image058.png" style='position:absolute;top:15.72%;
+left:31.25%;width:40.26%;height:5.47%'>
+<div class=O style='position:absolute;top:17.84%;left:9.93%;width:4.76%;
+height:16.43%'>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:50.53%'><span
+style='font-size:300%;color:#E2EBF0'>D<br>
+</span></div>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:49.46%;left:0%;width:83.33%;height:50.53%'><span
+style='font-size:300%;color:#E2EBF0;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+<div class=O style='position:absolute;top:17.84%;left:17.88%;width:4.23%;
+height:16.43%'>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:50.53%'><span
+style='font-size:300%;color:#F6BF69'>B<br>
+</span></div>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:49.46%;left:0%;width:84.37%;height:50.53%'><span
+style='font-size:300%;color:#F6BF69;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:79.5%;left:5.43%;width:104.1%;height:13.6%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=O style='mso-line-spacing:"-256 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;position:absolute;top:3.89%;left:1.27%;width:98.72%;
+height:93.5%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
+style='font-size:233%;color:#E2EBF0'>D</span><span style='font-size:233%;
+color:#E9EB5D'> </span><span style='font-size:200%;color:#E9EB5D'>and </span><span
+style='font-size:233%;color:#F6BF69'>B</span><span style='font-size:233%;
+color:#E9EB5D'> </span><span style='font-size:200%;color:#E9EB5D'>may be
+SNP-like variants in the promoter </span></span><span style='position:absolute;
+top:34.72%;left:0%;width:99.74%'><span style='font-size:200%;color:#E9EB5D'>itself
+(cis QTL) or in </span><span style='font-size:200%;color:#EAEC5E'>upstream
+genes (trans QTLs)</span><span style='font-size:300%;color:#E9EB5D'>.</span></span></div>
+</div>
+<div class=O style='position:absolute;top:7.59%;left:4.23%;width:22.78%;
+height:16.25%'>
+<div style='text-align:center;mso-line-spacing:"-233 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:1.74%;width:97.09%;
+height:33.69%'><span style='font-size:200%;color:#E9EB5D'>UPSTREAM<br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-233 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:32.6%;left:0%;width:100.0%;
+height:33.69%'><span style='font-size:200%;color:#E9EB5D'>modulators<br>
+</span></div>
+<div style='text-align:center;mso-line-spacing:"-233 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:66.3%;left:4.65%;width:90.69%;
+height:33.69%'><span style='font-size:200%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:7.59%;left:44.5%;width:16.95%;height:17.84%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:3.96%;left:7.03%;width:85.15%;
+height:92.07%'>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:0%;left:0%;width:100.0%;height:50.53%'><span
+style='font-size:300%;color:#E2EBF0'>High<br>
+</span></div>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16;position:absolute;top:49.46%;left:0%;width:100.0%;height:50.53%'><span
+style='font-size:300%;color:#E2EBF0;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:63.78%;left:8.74%;width:6.35%;height:17.84%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=O style='position:absolute;top:3.96%;left:20.83%;width:75.0%;
+height:92.07%'>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:50.53%'><span
+style='font-size:300%;color:#E2EBF0'>D<br>
+</span></div>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:49.46%;left:0%;width:83.33%;height:50.53%'><span
+style='font-size:300%;color:#E2EBF0;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:63.78%;left:15.09%;width:5.96%;height:17.84%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=O style='position:absolute;top:3.96%;left:20.0%;width:71.11%;
+height:92.07%'>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:50.53%'><span
+style='font-size:300%;color:#F6BF69'>B<br>
+</span></div>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:49.46%;left:0%;width:84.37%;height:50.53%'><span
+style='font-size:300%;color:#F6BF69;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div style='position:absolute;top:71.02%;left:7.54%;width:16.02%;height:12.54%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=O style='position:absolute;top:5.63%;left:7.43%;width:91.73%;
+height:87.32%'>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:50.0%'><span
+style='font-size:200%;color:#E9EB5D'><i>cis QTL</i></span><span
+style='font-size:200%;color:#E9EB5D;display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:48.38%;left:0%;width:82.88%;height:50.0%'><span
+style='font-size:200%;color:#E9EB5D;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<img border=0 src="slide0003_image059.png" style='position:absolute;top:57.24%;
+left:-1.05%;width:101.98%;height:7.59%'>
+<div class=O style='position:absolute;top:44.16%;left:47.15%;width:9.4%;
+height:12.72%'>
+<div style='mso-line-spacing:"-272 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:51.38%'><span
+style='font-size:233%;color:#F6BF69'>Low<br>
+</span></div>
+<div style='mso-line-spacing:"-272 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:50.0%;left:0%;width:83.09%;height:51.38%'><span
+style='font-size:233%;color:#F6BF69;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:58.12%;left:.79%;width:113.37%;height:6.36%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=O style='mso-line-spacing:"-200 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;position:absolute;top:11.11%;left:1.16%;width:98.83%;
+height:75.0%'><span style='font-family:Gadget;font-size:167%;color:white'>&gt;&gt;&gt;&gt;PROMOTER--ATG-Exon1-Intron1-Exon2-Intron2
+- etc-3'UTR &gt;&gt;&gt;&gt;&gt;</span></div>
+</div>
+<img border=0 src="slide0003_image060.png" style='position:absolute;top:37.98%;
+left:8.6%;width:13.77%;height:20.67%'>
+<div class=O style='position:absolute;top:40.28%;left:10.99%;width:1.72%;
+height:11.48%'>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:0%;width:100.0%;
+height:46.15%'><span style='font-family:"\30D2\30E9\30AE\30CE\89D2\30B4 Pro W3";
+font-size:233%;color:white'><b>&#4;</b></span><span style='font-family:Palatino;
+font-size:233%;color:white;display:none'><b><br>
+</b></span></div>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:50.76%;left:7.69%;width:84.61%;
+height:50.76%'><span style='font-family:Palatino;font-size:233%;color:white;
+mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</div>
+<div class=O style='position:absolute;top:40.63%;left:18.41%;width:1.72%;
+height:11.48%'>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:0%;width:100.0%;
+height:46.15%'><span style='font-family:"\30D2\30E9\30AE\30CE\89D2\30B4 Pro W3";
+font-size:233%;color:white'><b>&#4;</b></span><span style='font-family:Palatino;
+font-size:233%;color:white;display:none'><b><br>
+</b></span></div>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:49.23%;left:7.69%;width:84.61%;
+height:50.76%'><span style='font-family:Palatino;font-size:233%;color:white;
+mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</div>
+<img border=0 src="slide0003_image061.png" style='position:absolute;top:33.74%;
+left:8.6%;width:13.77%;height:20.67%'>
+<div class=O style='position:absolute;top:36.39%;left:18.41%;width:1.72%;
+height:11.48%'>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:0%;width:100.0%;
+height:46.15%'><span style='font-family:"\30D2\30E9\30AE\30CE\89D2\30B4 Pro W3";
+font-size:233%;color:white'><b>&#4;</b></span><span style='font-family:Palatino;
+font-size:233%;color:white;display:none'><b><br>
+</b></span></div>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:49.23%;left:7.69%;width:84.61%;
+height:50.76%'><span style='font-family:Palatino;font-size:233%;color:white;
+mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</div>
+<div class=O style='position:absolute;top:36.04%;left:10.99%;width:1.72%;
+height:11.48%'>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:0%;width:100.0%;
+height:46.15%'><span style='font-family:"\30D2\30E9\30AE\30CE\89D2\30B4 Pro W3";
+font-size:233%;color:white'><b>&#4;</b></span><span style='font-family:Palatino;
+font-size:233%;color:white;display:none'><b><br>
+</b></span></div>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:49.23%;left:7.69%;width:84.61%;
+height:50.76%'><span style='font-family:Palatino;font-size:233%;color:white;
+mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</div>
+<div class=O style='position:absolute;top:37.8%;left:20.66%;width:.13%;
+height:12.01%'>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:0%;left:0%;width:100.0%;
+height:48.52%'><span style='font-family:Palatino;font-size:233%;color:white;
+display:none'><b><br>
+</b></span></div>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17;position:absolute;top:51.47%;left:0%;width:100.0%;
+height:48.52%'><span style='font-family:Palatino;font-size:233%;color:white;
+mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</div>
+<img border=0 src="slide0003_image062.png" style='position:absolute;top:27.38%;
+left:4.9%;width:21.45%;height:21.37%'>
+<div style='position:absolute;top:27.38%;left:5.03%;width:20.92%;height:12.54%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=O style='position:absolute;top:5.63%;left:6.32%;width:94.3%;
+height:87.32%'>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:50.0%'><span
+style='font-size:200%;color:#E9EB5D'><i>trans QTL</i></span><span
+style='font-size:200%;color:#E9EB5D;display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:48.38%;left:0%;width:83.22%;height:50.0%'><span
+style='font-size:200%;color:#E9EB5D;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+</div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>This slide is
+  illustrates two major types of QTLs that modulate variability in
+  transcript-relative steady state abundance.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>1. cis QTLs are defined
+  as QTLs that are closely linked to the gene whose transcript is the measured
+  trait. For example, a polymorphism in the promoter that affects binding of a
+  transcription factor. However, cis QTLs can be far upstream or downstream polymorphisms
+  in enhancers or may be in 3� UTR binding sites that affect message stability.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>2. trans QTLs map far
+  enough away from the location of the gene that gives rise to the transcript
+  that is being measured so that we can be fairly certain that the QTL is not
+  in the gene itself. The most blatant type of trans QTL would be a
+  polymorphism in a transcription factor. But in the majority of cases, the
+  trans QTLs can be far removed in a mechanistic sense from the actual events
+  modulating transcript abundance. That is why there are three overlapping
+  arrows in the figure.<span style="mso-spacerun: yes">&nbsp; </span>The way in
+  which an upstream polymorphism influences a downstream difference in mRNA
+  abundance can be indirect. Effects can:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3><span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>a.<span style="mso-spacerun:
+  yes">&nbsp; </span>cross tissue types (a polymorphic liver enzyme may affect
+  CNS gene expression)</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3><span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>b.<span style="mso-spacerun:
+  yes">&nbsp; </span>cross time (the modulator is only expressed for one day
+  during development but has permanent effects in adults)</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3><span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>c.<span style="mso-spacerun:
+  yes">&nbsp; </span>may be contingent on environmental factors (heat shock may
+  trigger the expression of a polymorphic factor that affects mRNA abundance).</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>This slide is
+  illustrates two major types of QTLs that modulate variability in
+  transcript-relative steady state abundance.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>1. cis QTLs are defined
+  as QTLs that are closely linked to the gene whose transcript is the measured
+  trait. For example, a polymorphism in the promoter that affects binding of a
+  transcription factor. However, cis QTLs can be far upstream or downstream polymorphisms
+  in enhancers or may be in 3� UTR binding sites that affect message stability.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. trans QTLs map far
+  enough away from the location of the gene that gives rise to the transcript
+  that is being measured so that we can be fairly certain that the QTL is not
+  in the gene itself. The most blatant type of trans QTL would be a
+  polymorphism in a transcription factor. But in the majority of cases, the
+  trans QTLs can be far removed in a mechanistic sense from the actual events
+  modulating transcript abundance. That is why there are three overlapping
+  arrows in the figure.<span style="mso-spacerun: yes">&nbsp; </span>The way in
+  which an upstream polymorphism influences a downstream difference in mRNA
+  abundance can be indirect. Effects can:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2><span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>a.<span style="mso-spacerun:
+  yes">&nbsp; </span>cross tissue types (a polymorphic liver enzyme may affect
+  CNS gene expression)</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2><span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>b.<span style="mso-spacerun:
+  yes">&nbsp; </span>cross time (the modulator is only expressed for one day
+  during development but has permanent effects in adults)</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2><span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>c.<span style="mso-spacerun:
+  yes">&nbsp; </span>may be contingent on environmental factors (heat shock may
+  trigger the expression of a polymorphic factor that affects mRNA abundance).</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
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+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Discovering upstream modulatory loci">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0004.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
+border=0 src="slide0004_image063.png" style='position:absolute;top:38.86%;
+left:5.03%;width:84.9%;height:45.75%'>
+<div style='position:absolute;top:5.47%;left:2.51%;width:93.64%;height:8.65%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";position:absolute;top:20.4%;
+left:1.41%;width:97.31%;height:75.51%'><span style='font-family:Verdana;
+font-size:64%'>Discovering upstream modulatory loci</span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</div>
+<img border=0 src="slide0004_image064.png" style='position:absolute;top:20.31%;
+left:18.01%;width:19.2%;height:25.97%'><img border=0
+src="slide0004_image065.png" style='position:absolute;top:32.5%;left:78.01%;
+width:19.2%;height:25.97%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Please bring the Trait
+  Data and Analysis window to the front and look for the Interval Mapping
+  button. Confirm that you are back to the trait amyloid beta precursor
+  protein.<span style="mso-spacerun: yes">&nbsp; </span>If so, then just click
+  the button.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Notice that the default
+  for:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Select Chrs (chromosomes)
+  is ALL</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Select Mapping Scale is
+  set to GENETIC</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Options: Permutation test
+  YES<span style="mso-spacerun: yes">&nbsp; </span>(2000 is the default number)</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Options: Bootstrap test
+  YES (2000 is the default number)</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0004_image010.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0004_image010.png
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new file mode 100755
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new file mode 100755
index 00000000..7f5a5295
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0004_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0004_notes_pane.htm
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0004_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Please bring the Trait
+  Data and Analysis window to the front and look for the Interval Mapping
+  button. Confirm that you are back to the trait amyloid beta precursor
+  protein.<span style="mso-spacerun: yes">&nbsp; </span>If so, then just click
+  the button.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notice that the default
+  for:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Select Chrs (chromosomes)
+  is ALL</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Select Mapping Scale is
+  set to GENETIC</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Options: Permutation test
+  YES<span style="mso-spacerun: yes">&nbsp; </span>(2000 is the default number)</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Options: Bootstrap test
+  YES (2000 is the default number)</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0005.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0005.htm
new file mode 100755
index 00000000..b2dc8582
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0005.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: WebQTL searches for upstream controllers">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0005.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:-.53%;left:1.72%;width:101.19%;height:8.65%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;position:absolute;top:18.36%;left:.91%;width:98.95%;
+height:75.51%'><span style='font-family:Verdana;font-size:64%'><i>WebQTL
+searches for upstream controllers</i></span><span style='font-family:Verdana;
+font-size:73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</div>
+<div style='position:absolute;top:71.02%;left:34.96%;width:45.96%;height:19.78%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:3.57%;left:2.3%;width:97.69%;
+height:91.96%'><span style='position:absolute;top:0%;left:0%;width:98.82%'><span
+style='font-size:167%;color:#E9EB5D'><i>App maps on Chr 16 (blue </i></span></span><span
+style='position:absolute;top:25.24%;left:0%;width:100.0%'><span
+style='font-size:167%;color:#E9EB5D'><i>arrow points to the orange </i></span></span><span
+style='position:absolute;top:49.51%;left:0%;width:86.72%'><span
+style='font-size:167%;color:#E9EB5D'><i>triangle) but the best </i></span></span><span
+style='position:absolute;top:74.75%;left:0%;width:86.72%'><span
+style='font-size:167%;color:#E9EB5D'><i>locus is on Chr 7.</i></span><span
+style='font-size:233%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></div>
+</div>
+<img border=0 src="slide0005_image066.png" style='position:absolute;top:8.83%;
+left:1.19%;width:98.27%;height:53.88%'><img border=0
+src="slide0005_image067.png" style='position:absolute;top:46.64%;left:15.76%;
+width:15.89%;height:53.35%'><img border=0 src="slide0005_image068.png"
+style='position:absolute;top:46.64%;left:80.0%;width:10.99%;height:53.35%'><img
+border=0 src="slide0005_image069.png" style='position:absolute;top:41.34%;
+left:76.02%;width:11.65%;height:22.79%'><img border=0
+src="slide0005_image070.png" style='position:absolute;top:41.51%;left:29.13%;
+width:12.71%;height:24.38%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>This is a major output
+  type: a so-called full-genome interval map.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>The X-axis represents all
+  19 autosomes and the X chromosome as if they were laid end to end with short
+  gaps between the telomere of one chromosome and the centromere of the next
+  chromosome (mouse chromosomes only have a single long arm and the centromere
+  represents the origin of each chromosome for numerical purpose: 0
+  centimorgans at almost 0 megabases). The blue labels along the bottom of the
+  figure list a subset of the 3795 markers that were used in mapping.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>The thick blue wavy line
+  running across chromosomes summarizes the strength of association between
+  variation in the phenotype (App expression differences) and the two genotypes
+  of all markers and the intervals between markers (hence, interval mapping).<span
+  style="mso-spacerun: yes">&nbsp; </span>The height of the wave (blue Y-axis
+  to the left) provides the likelihood ratio statistic (LRS). Divide by 4.61 to
+  convert these values to LOD scores.<span style="mso-spacerun: yes">&nbsp;
+  </span>Or you can read them as a chi-square-like statistic.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>The red line and the red
+  axis to the far right provide an estimate of the effect that a QTL has on
+  expression of App (this estimate of the so-called additive effect tends to be
+  too high). If the red line is below the X-axis then this means that the allele
+  inherited from C57BL/6J (B6 or B) at a particular marker is associated with
+  higher values. If the red line is above the X-axis then the DBA/2J allele (D2
+  or D) is associated with higher trait values. Multiply the additive effect
+  size by 2 to estimate the difference between the set of strains that have the
+  B/B genotype and those that have the D/D genotype at a specific marker. For
+  example, on distal Chr 7 the red line peaks at a value of about 0.2. That
+  means that this region of chromosome 2 is responsible for a 0.4 unit
+  expression difference between B/B strains and the D/D strains.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>The yellow histogram bars:
+  These summarize the results of a whole-genome bootstrap of the trait that is
+  performed 1000 times. What is a bootstrap? A bootstrap provides a method to
+  evaluate whether results are robust. If we drop out one strain, do we still
+  get the same results? When mapping quantitative traits, each strain normally
+  gets one equally weighted vote. But using the bootstrap procedure, we give
+  each strain a random weighting factor of between 0 and 1.<span
+  style="mso-spacerun: yes">&nbsp; </span>We then remap the trait and find THE
+  SINGLE BEST LRS VALUE per bootstrap. We do this 1000 times. In this example,
+  most bootstrap results cluster on Chr 3 and Chr 7 under the LRS peaks. That
+  is somewhat reassuring. But notice that a substantial number of bootstrap are
+  scattered around on other chromosomes. About 30% of the bootstrap resamples
+  have a peak on Chr 7. That is pretty good, but does makes us realize that the
+  sample we are working with is still quite small and fragile.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>The horizontal dashed
+  lines at 10.5 and 17.3 are the likelihood ratio statistic (LRS) values
+  associated with the suggestive and significant genome-wide probabilities that
+  were established by permutations of phenotypes across genotypes. We shuffle
+  randomly 2000 times and obtain a distribution of peak LRS scores to generate
+  a null distribution. Five percent of the time, one of these permuted data
+  sets will have a peak LRS higher than 17.3. We call that level the 0.05
+  significance threshold for a whole genome scan. The p = 0.67 point is the
+  suggestive level, and corresponds to the green dashed line.<span
+  style="mso-spacerun: yes">&nbsp; </span>These thresholds are conservative for
+  transcripts that have expression variation that is highly heritable. The putative
+  or suggestive QTL on Chr 3 is probably more than just suggestive.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>One other point: the
+  mapping procedure we use is computationally very fast, but it is relatively
+  simple. We are not looking for gene-gene interactions and we are not fitting
+  multiple QTLs in combinations. Consider this QTL analysis a first pass that
+  will highlight hot spots and warm spots that are worth following up on using
+  more sophisticated models.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>CLICKABLE REGIONS:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>1. If you click on the
+  Chromosome number then you will generate a new map just for that chromosome.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>2. If you click on the
+  body of the map, say on the blue line, then you will generate a view on a 10
+  Mb window of that part of the genome from the UCSC Genome Browser web site.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>3. If you click on a
+  marker symbol, then you will generate a new Trait data and Analysis window
+  with the genotypes loaded into the window just like any other trait. More on
+  this in Section 3.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>4. You can drag these maps
+  off of the browser window and onto your desktop. They will be saved as PNG or
+  PDF files. You can import them into Photoshop or other programs.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>5. There is also an option
+  at the bottom of the page to download a 2X higher resolution image of this
+  plot for papers and presentations.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>6. You can also download
+  the results of the analysis in a text format</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0005_image013.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0005_image013.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0005_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0005_notes_pane.htm
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@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>This is a major output
+  type: a so-called full-genome interval map.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The X-axis represents all
+  19 autosomes and the X chromosome as if they were laid end to end with short
+  gaps between the telomere of one chromosome and the centromere of the next
+  chromosome (mouse chromosomes only have a single long arm and the centromere
+  represents the origin of each chromosome for numerical purpose: 0
+  centimorgans at almost 0 megabases). The blue labels along the bottom of the
+  figure list a subset of the 3795 markers that were used in mapping.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The thick blue wavy line
+  running across chromosomes summarizes the strength of association between
+  variation in the phenotype (App expression differences) and the two genotypes
+  of all markers and the intervals between markers (hence, interval mapping).<span
+  style="mso-spacerun: yes">&nbsp; </span>The height of the wave (blue Y-axis
+  to the left) provides the likelihood ratio statistic (LRS). Divide by 4.61 to
+  convert these values to LOD scores.<span style="mso-spacerun: yes">&nbsp;
+  </span>Or you can read them as a chi-square-like statistic.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The red line and the red
+  axis to the far right provide an estimate of the effect that a QTL has on
+  expression of App (this estimate of the so-called additive effect tends to be
+  too high). If the red line is below the X-axis then this means that the allele
+  inherited from C57BL/6J (B6 or B) at a particular marker is associated with
+  higher values. If the red line is above the X-axis then the DBA/2J allele (D2
+  or D) is associated with higher trait values. Multiply the additive effect
+  size by 2 to estimate the difference between the set of strains that have the
+  B/B genotype and those that have the D/D genotype at a specific marker. For
+  example, on distal Chr 7 the red line peaks at a value of about 0.2. That
+  means that this region of chromosome 2 is responsible for a 0.4 unit
+  expression difference between B/B strains and the D/D strains.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The yellow histogram bars:
+  These summarize the results of a whole-genome bootstrap of the trait that is
+  performed 1000 times. What is a bootstrap? A bootstrap provides a method to
+  evaluate whether results are robust. If we drop out one strain, do we still
+  get the same results? When mapping quantitative traits, each strain normally
+  gets one equally weighted vote. But using the bootstrap procedure, we give
+  each strain a random weighting factor of between 0 and 1.<span
+  style="mso-spacerun: yes">&nbsp; </span>We then remap the trait and find THE
+  SINGLE BEST LRS VALUE per bootstrap. We do this 1000 times. In this example,
+  most bootstrap results cluster on Chr 3 and Chr 7 under the LRS peaks. That
+  is somewhat reassuring. But notice that a substantial number of bootstrap are
+  scattered around on other chromosomes. About 30% of the bootstrap resamples
+  have a peak on Chr 7. That is pretty good, but does makes us realize that the
+  sample we are working with is still quite small and fragile.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The horizontal dashed
+  lines at 10.5 and 17.3 are the likelihood ratio statistic (LRS) values
+  associated with the suggestive and significant genome-wide probabilities that
+  were established by permutations of phenotypes across genotypes. We shuffle
+  randomly 2000 times and obtain a distribution of peak LRS scores to generate
+  a null distribution. Five percent of the time, one of these permuted data
+  sets will have a peak LRS higher than 17.3. We call that level the 0.05
+  significance threshold for a whole genome scan. The p = 0.67 point is the
+  suggestive level, and corresponds to the green dashed line.<span
+  style="mso-spacerun: yes">&nbsp; </span>These thresholds are conservative for
+  transcripts that have expression variation that is highly heritable. The putative
+  or suggestive QTL on Chr 3 is probably more than just suggestive.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>One other point: the
+  mapping procedure we use is computationally very fast, but it is relatively
+  simple. We are not looking for gene-gene interactions and we are not fitting
+  multiple QTLs in combinations. Consider this QTL analysis a first pass that
+  will highlight hot spots and warm spots that are worth following up on using
+  more sophisticated models.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>CLICKABLE REGIONS:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>1. If you click on the
+  Chromosome number then you will generate a new map just for that chromosome.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. If you click on the
+  body of the map, say on the blue line, then you will generate a view on a 10
+  Mb window of that part of the genome from the UCSC Genome Browser web site.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3. If you click on a
+  marker symbol, then you will generate a new Trait data and Analysis window
+  with the genotypes loaded into the window just like any other trait. More on
+  this in Section 3.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>4. You can drag these maps
+  off of the browser window and onto your desktop. They will be saved as PNG or
+  PDF files. You can import them into Photoshop or other programs.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>5. There is also an option
+  at the bottom of the page to download a 2X higher resolution image of this
+  plot for papers and presentations.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>6. You can also download
+  the results of the analysis in a text format</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006.htm
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: Genetic versus Physical maps for App expression">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0006.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:-.53%;left:1.72%;width:116.02%;height:8.65%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;position:absolute;top:18.36%;left:.79%;width:99.2%;
+height:75.51%'><span style='font-family:Verdana;font-size:64%'><i>Genetic
+versus Physical maps for App expression</i></span><span style='font-family:
+Verdana;font-size:73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</div>
+<img border=0 src="slide0006_image071.png" style='position:absolute;top:8.83%;
+left:1.72%;width:98.27%;height:39.92%'><img border=0
+src="slide0006_image072.png" style='position:absolute;top:35.51%;left:1.85%;
+width:98.27%;height:54.06%'>
+<div class=O style='position:absolute;top:91.69%;left:5.96%;width:95.23%;
+height:7.42%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
+style='font-size:117%;color:#E9EB5D'><i>The difference between genetic and
+physical scale is analogous to measuring the </i></span></span><span
+style='position:absolute;top:42.85%;left:0%;width:96.66%'><span
+style='font-size:117%;color:#E9EB5D'><i>separation between New York and Boston
+in either travel hours or kilometers</i></span><span style='font-size:150%;
+color:#E9EB5D'><i>.</i></span><span style='font-size:167%;color:#E9EB5D;
+mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></div>
+</div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>The map on the top has an
+  X-axis scale based on frequency of recombinations events between markers (B
+  to D transitions, see slide 19 for a color-coded example). These so-called
+  genetic maps are scaled in centimorgan (recombinations per 100 gametes). In contrast,
+  the physical map shown below the genetic map has an X-axis scale based on DNA
+  length measured in nucleotides or base-pairs. Notice the large difference
+  between the two maps in the size of Chr 19 (large on the genetic scale but
+  small on the physical scale).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Also notice the large
+  difference in the width of the chromosome 7 QTL peak. In mice, recombinations
+  occur with higher frequency toward the telomeric side (right side) of each
+  chromosome. As a result, genetic maps are stretched out more toward the
+  telomere relative to a physical map. The QTL on distal Chr 7 is therefore
+  actually more precisely mapped than might appear looking at the genetic map.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>The physical scale is
+  becoming more useful than the genetic scale primarily because many other data
+  types can be easily superimposed on a physical map. You will see more
+  examples in the next several slides.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006_image015.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006_image015.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006_image072.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006_image072.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006_notes_pane.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0006_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The map on the top has an
+  X-axis scale based on frequency of recombinations events between markers (B
+  to D transitions, see slide 19 for a color-coded example). These so-called
+  genetic maps are scaled in centimorgan (recombinations per 100 gametes). In contrast,
+  the physical map shown below the genetic map has an X-axis scale based on DNA
+  length measured in nucleotides or base-pairs. Notice the large difference
+  between the two maps in the size of Chr 19 (large on the genetic scale but
+  small on the physical scale).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Also notice the large
+  difference in the width of the chromosome 7 QTL peak. In mice, recombinations
+  occur with higher frequency toward the telomeric side (right side) of each
+  chromosome. As a result, genetic maps are stretched out more toward the
+  telomere relative to a physical map. The QTL on distal Chr 7 is therefore
+  actually more precisely mapped than might appear looking at the genetic map.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The physical scale is
+  becoming more useful than the genetic scale primarily because many other data
+  types can be easily superimposed on a physical map. You will see more
+  examples in the next several slides.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007.htm
new file mode 100755
index 00000000..01fb76a9
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Physical map for distal chromosome 7">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0007.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:-.53%;left:1.72%;width:101.05%;height:8.65%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;position:absolute;top:18.36%;left:.91%;width:97.9%;
+height:75.51%'><span style='font-family:Verdana;font-size:64%'>Physical map for
+distal chromosome 7</span><span style='font-family:Verdana;font-size:73%;
+mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</div>
+<div style='position:absolute;top:7.77%;left:5.82%;width:94.03%;height:6.18%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:11.42%;left:1.12%;width:98.87%;
+height:74.28%'><span style='font-size:167%;color:#E9EB5D'>Distal Chr 7 from
+~120 and 132 Mb may modulate</span><span style='font-size:167%;color:#E9EB5D'><i>
+App</i></span><span style='font-size:200%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></div>
+</div>
+<img border=0 src="slide0007_image073.png" style='position:absolute;top:93.28%;
+left:6.62%;width:75.23%;height:3.71%'><img border=0 src="slide0007_image075.png"
+style='position:absolute;top:15.54%;left:6.62%;width:68.34%;height:75.61%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Physical map of variation
+  in App expression in brain on distal Chr 7 (a blow up of the whole-genome map
+  on the previous slide).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>1.</font><font face=Verdana
+  size=3> You can now see that the X-axis is on a physical scale of megabases
+  (Mb). The QTL peak is roughly between 120 and 132 Mb.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>2. The small irregular
+  colored blocks and marks toward the top of the map mark the locations of
+  genes superimposed on the physical map. Neighboring genes are offset slightly
+  in the vertical axis for display purpose. Note one region of very high gene
+  density from about 120 to 123 Mb.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>3. The orange hash marks
+  along the X-axis represent the number of single nucleotide polymorphisms that
+  distinguish the two parental strains (C57BL/6J and DBA/2J) from each other.
+  We call this the SNP seismograph track (see Glossary for more details). Regions
+  with low numbers of SNPs have closely matched sequences and are less likely
+  to contain QTLs.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>4. As before, the thin red
+  line shows the additive effect size. By convention the positive values
+  signify the D alleles are associated with higher expression of App in this
+  region of Chr 7 than the B alleles. The maximum effect size is about +0.20
+  log2 expression units per D allele. The differences been the BB and DD
+  genotypes (BB and DD because each strain has two alleles; one per chromosome)
+  is therefore about 2^0.4 = 1.32 or a 32% increment in DD relative to BB at
+  this locus.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>5. If you scroll just
+  under the Physical Map you will see text that reads �DISPLAY from XXX Mb TO
+  YYY Mb�..�<span style="mso-spacerun: yes">&nbsp; </span>These physical maps
+  are zoomable, a feature we will exploit to evaluate candidate genes in this
+  QTL interval.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image016.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image016.png
new file mode 100755
index 00000000..53a17c76
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image016.png
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new file mode 100755
index 00000000..308c4df0
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image017.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image073.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image073.png
new file mode 100755
index 00000000..c0174c3f
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image073.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image075.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image075.png
new file mode 100755
index 00000000..9a3e3264
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_image075.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_notes_pane.htm
new file mode 100755
index 00000000..24c42724
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0007_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Physical map of variation
+  in App expression in brain on distal Chr 7 (a blow up of the whole-genome map
+  on the previous slide).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font face=Verdana
+  size=2> You can now see that the X-axis is on a physical scale of megabases
+  (Mb). The QTL peak is roughly between 120 and 132 Mb.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. The small irregular
+  colored blocks and marks toward the top of the map mark the locations of
+  genes superimposed on the physical map. Neighboring genes are offset slightly
+  in the vertical axis for display purpose. Note one region of very high gene
+  density from about 120 to 123 Mb.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3. The orange hash marks
+  along the X-axis represent the number of single nucleotide polymorphisms that
+  distinguish the two parental strains (C57BL/6J and DBA/2J) from each other.
+  We call this the SNP seismograph track (see Glossary for more details). Regions
+  with low numbers of SNPs have closely matched sequences and are less likely
+  to contain QTLs.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>4. As before, the thin red
+  line shows the additive effect size. By convention the positive values
+  signify the D alleles are associated with higher expression of App in this
+  region of Chr 7 than the B alleles. The maximum effect size is about +0.20
+  log2 expression units per D allele. The differences been the BB and DD
+  genotypes (BB and DD because each strain has two alleles; one per chromosome)
+  is therefore about 2^0.4 = 1.32 or a 32% increment in DD relative to BB at
+  this locus.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>5. If you scroll just
+  under the Physical Map you will see text that reads �DISPLAY from XXX Mb TO
+  YYY Mb�..�<span style="mso-spacerun: yes">&nbsp; </span>These physical maps
+  are zoomable, a feature we will exploit to evaluate candidate genes in this
+  QTL interval.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008.htm
new file mode 100755
index 00000000..8a9290b6
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Evaluating candidate genes">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0008.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
+border=0 src="slide0008_image076.png" style='position:absolute;top:34.09%;
+left:1.72%;width:97.48%;height:61.48%'>
+<div style='position:absolute;top:-1.06%;left:.79%;width:93.64%;height:8.65%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";position:absolute;top:18.36%;
+left:1.41%;width:97.31%;height:75.51%'><span style='font-family:Verdana;
+font-size:64%'>Evaluating candidate genes</span><span style='font-family:Verdana;
+font-size:73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</div>
+<img border=0 src="slide0008_image077.png" style='position:absolute;top:8.83%;
+left:1.72%;width:34.83%;height:22.61%'>
+<div style='position:absolute;top:3.35%;left:69.53%;width:33.9%;height:17.84%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:3.96%;left:2.73%;width:93.75%;
+height:91.08%'>
+<div style='text-align:center;position:absolute;top:0%;left:0%;width:100.0%;
+height:33.69%'><span style='font-size:200%;color:#E9EB5D'><i>Right
+position<br>
+</i></span></div>
+<div style='text-align:center;position:absolute;top:32.6%;left:0%;width:100.0%;
+height:67.39%'><span style='position:absolute;top:0%;left:.41%;width:100.0%'><span
+style='font-size:200%;color:#E9EB5D'><i>and high </i></span></span><span
+style='position:absolute;top:50.0%;left:0%;width:100.0%'><span
+style='font-size:200%;color:#E9EB5D'><i>correlation</i></span></span></div>
+</div>
+</div>
+<div style='position:absolute;top:17.84%;left:75.89%;width:21.72%;height:14.31%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:3.7%;left:0%;width:100.0%;height:
+88.88%'>
+<div style='text-align:center;position:absolute;top:0%;left:6.7%;width:86.58%;
+height:58.33%'><span style='font-size:267%;color:#E9EB5D'><i><span
+style="mso-spacerun: yes">&nbsp;</span></i></span><span style='font-size:200%;
+color:#E9EB5D'><i>= better<br>
+</i></span></div>
+<div style='text-align:center;position:absolute;top:56.94%;left:0%;width:100.0%;
+height:43.05%'><span style='font-size:200%;color:#E9EB5D'><i>candidates</i></span></div>
+</div>
+</div>
+</div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4><b>Evaluating
+  candidate genes (CHECKED BOXES) responsible for variability in APP
+  expression:</b></font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>A large number
+  of genes are usually in the QTL interval and are therefore POSITIONAL
+  CANDIDATES, but they will differ greatly in their biological and
+  bioinformatic plausibility. Assume that the QTL has been located between 119
+  and 131 Mb (12 Mb). There will typically be 12 to 15 genes per Mb, so we
+  might need to evaluate several hundred positional candidates. In this
+  particular case there are about 100 known genes in this interval. Eight of
+  these are highlighted in the table above with check marks in the boxes to the
+  left.<span style="mso-spacerun: yes">&nbsp; </span>We need to highlight and
+  objectively score the biologically relevant subset of all 100 positional
+  candidate genes. We could look through gene ontologies and expression levels
+  to help us shorten the list. An alternate way available using WebQTL is to
+  generate a list of those genes in this interval that have transcripts that
+  co-vary in expression with App expression. That is what the table shows.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>1. To replicate
+  this table go back to the Trait Data and Analysis Form. Choose to sort
+  correlations by POSITION and select RETURN = 500. Then scroll down the list
+  to Chr 7 and review the subset of positional candidates that share expression
+  with App. You should see a list similar to that shown above. Gtf3c1 is a good
+  biological candidate and has a high covariation in expression with App.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>2. Caveat:<span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>Of course, the gene or genes
+  that control App expression may not be in this list. A protein coding
+  difference might be the ultimate cause of variation in App transcript level
+  and the expression covariation might be close to zero. Our list may also
+  simply be missing the right transcript since the microarray is not truly
+  comprehensive. Furthermore, even if the list contains the QTL gene, an
+  expression difference may only have been expressed early in development or
+  even in another tissue such as liver. While it is important to recognize
+  these caveats, it is equally important to devise a rational way to rank
+  candidates given existing data. Coexpression is one of several criteria used
+  to evaluate positional candidates. We will see others in the next slide.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>3. We can also
+  assess the likelihood that candidates contain functional polymorphism in
+  promoters and enhancers that affect their expression simply by mapping the
+  transcripts of all candidate genes to see if they �map back� to the location
+  of gene itself. A transcript that maps to its own location is referred to as
+  a cis QTL. We essentially ask: Which of the transcripts listed in the
+  Correlation Table above (from Gtf3c1 to Zranb1) has variation in expression
+  that maps to Chr 7 at about 120 Mb?<span style="mso-spacerun: yes">&nbsp;
+  </span>The logic of this search is that if a gene controls the level of its
+  own expression it is also much more likely to generate other downstream
+  effects. The Gtf3c1 transcript is a weak cis QTL with a local LRS maximum of
+  about 7.0 (D alleles are high). That is just about sufficient to declare it
+  to be a cis QTL. [No whole genome correction is required and a point-wise
+  p-value of 0.05 is the appropriate test. A p-value of 0.05 is roughly
+  equivalent to an LRS of 6.0 (LOD = 1.3).]</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image018.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image018.png
new file mode 100755
index 00000000..9535e6bb
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image018.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image019.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image019.png
new file mode 100755
index 00000000..7e86d735
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image019.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image021.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image021.png
new file mode 100755
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image021.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image076.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image076.png
new file mode 100755
index 00000000..14e3fbe5
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image076.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image077.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_image077.png
new file mode 100755
index 00000000..ec9fff87
--- /dev/null
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_notes_pane.htm
new file mode 100755
index 00000000..9f5e373a
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0008_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4><b>Evaluating
+  candidate genes (CHECKED BOXES) responsible for variability in APP
+  expression:</b></font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>A large number
+  of genes are usually in the QTL interval and are therefore POSITIONAL
+  CANDIDATES, but they will differ greatly in their biological and
+  bioinformatic plausibility. Assume that the QTL has been located between 119
+  and 131 Mb (12 Mb). There will typically be 12 to 15 genes per Mb, so we
+  might need to evaluate several hundred positional candidates. In this
+  particular case there are about 100 known genes in this interval. Eight of
+  these are highlighted in the table above with check marks in the boxes to the
+  left.<span style="mso-spacerun: yes">&nbsp; </span>We need to highlight and
+  objectively score the biologically relevant subset of all 100 positional
+  candidate genes. We could look through gene ontologies and expression levels
+  to help us shorten the list. An alternate way available using WebQTL is to
+  generate a list of those genes in this interval that have transcripts that
+  co-vary in expression with App expression. That is what the table shows.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>1. To replicate
+  this table go back to the Trait Data and Analysis Form. Choose to sort
+  correlations by POSITION and select RETURN = 500. Then scroll down the list
+  to Chr 7 and review the subset of positional candidates that share expression
+  with App. You should see a list similar to that shown above. Gtf3c1 is a good
+  biological candidate and has a high covariation in expression with App.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>2. Caveat:<span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>Of course, the gene or genes
+  that control App expression may not be in this list. A protein coding
+  difference might be the ultimate cause of variation in App transcript level
+  and the expression covariation might be close to zero. Our list may also
+  simply be missing the right transcript since the microarray is not truly
+  comprehensive. Furthermore, even if the list contains the QTL gene, an
+  expression difference may only have been expressed early in development or
+  even in another tissue such as liver. While it is important to recognize
+  these caveats, it is equally important to devise a rational way to rank
+  candidates given existing data. Coexpression is one of several criteria used
+  to evaluate positional candidates. We will see others in the next slide.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>3. We can also
+  assess the likelihood that candidates contain functional polymorphism in
+  promoters and enhancers that affect their expression simply by mapping the
+  transcripts of all candidate genes to see if they �map back� to the location
+  of gene itself. A transcript that maps to its own location is referred to as
+  a cis QTL. We essentially ask: Which of the transcripts listed in the
+  Correlation Table above (from Gtf3c1 to Zranb1) has variation in expression
+  that maps to Chr 7 at about 120 Mb?<span style="mso-spacerun: yes">&nbsp;
+  </span>The logic of this search is that if a gene controls the level of its
+  own expression it is also much more likely to generate other downstream
+  effects. The Gtf3c1 transcript is a weak cis QTL with a local LRS maximum of
+  about 7.0 (D alleles are high). That is just about sufficient to declare it
+  to be a cis QTL. [No whole genome correction is required and a point-wise
+  p-value of 0.05 is the appropriate test. A p-value of 0.05 is roughly
+  equivalent to an LRS of 6.0 (LOD = 1.3).]</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009.htm
new file mode 100755
index 00000000..16351b5b
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Physical maps are zoomable">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0009.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
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+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:-.53%;left:1.72%;width:101.05%;height:8.65%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;position:absolute;top:18.36%;left:.91%;width:97.9%;
+height:75.51%'><span style='font-family:Verdana;font-size:64%'>Physical maps
+are zoomable</span><span style='font-family:Verdana;font-size:73%;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></div>
+</div>
+<img border=0 src="slide0009_image078.png" style='position:absolute;top:8.83%;
+left:3.31%;width:89.93%;height:41.69%'><img border=0
+src="slide0009_image079.png" style='position:absolute;top:44.52%;left:7.54%;
+width:42.91%;height:48.76%'><img border=0 src="slide0009_image080.png"
+style='position:absolute;top:94.52%;left:0%;width:97.08%;height:3.71%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>An even higher blow-up of
+  part of the Chr 7 physical map of variation in App expression in brain.<span
+  style="mso-spacerun: yes">&nbsp; </span>The QTL region actually extends from
+  about 119 to 129.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>1. As mentioned
+  in the previous slide another important approach to ranking candidates is
+  based on the number of sequence variants that distinguish the parental
+  strains. If we were sure that the sequences of the gene, its promoter, and
+  its enhancers were identical between the strains then we could discount--but
+  not eliminate--that gene as a candidate. The Gtf3c1 candidate almost falls
+  into this category: of 663 known SNPs in and around this gene, only four
+  differ between C57BL/6J and DBA/2J. Gtf3c1 is essentially
+  identical-by-descent in these strains and is a less likely candidate. In
+  contrast, if the two alleles of the gene have dozens of functional variants
+  in exons, promoters, enhancers, and splice sites, then it becomes a higher
+  priority candidate.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>Of course it
+  only takes a single critical sequence variant to generate downstream effects.
+  The argument above is really about the prior probabilities. Where would you
+  place your bets given the information at hand?</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>2.<span
+  style="mso-spacerun: yes">&nbsp; </span>If you scroll down the INTERVAL
+  ANALYST you will find that Ctbp2 is a particularly interesting candidate that
+  contains lots of SNPs (n = 75 and a SNP density of 0.55 SNP/Kb). Ctbp2 is
+  also closer to our QTL peak than was Gtf3c1. Not only does Ctbp2 contain lots
+  of SNPs but it is also is associated with a powerful cis QTL with an LRS of
+  24.2 (divide by 4.61 to get the equivalent LOD score of 5.25).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>3.<span
+  style="mso-spacerun: yes">&nbsp; </span>At this high magnification,
+  individual genes are distinct. They are color coded by their density of SNPs.
+  Bright orange represents those genes that have a high SNP density (C57BL/6J
+  versus DBA/2J), black represents genes with low SNP density. Roll the cursor
+  over a gene block and its name will pop up, along with information on exon
+  number.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>4.<span
+  style="mso-spacerun: yes">&nbsp; </span>Beneath the physical map you will
+  find an INTERVAL ANALYST table that lists information on known genes in the
+  region on which you have zoomed the Physical Map.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>5.<span
+  style="mso-spacerun: yes">&nbsp; </span>As always: error-checking is
+  important. Some genes may be missing from the Interval Analyst (recent
+  additions or errors of omission). In this case the Zranb1 gene that is
+  located just proximal to Ctbp2 is not listed in the INTERVAL ANALYST.
+  Double-check the interval using the Genome Browser links (blue and beige
+  horizontal bars) at the top of the PHYSICAL MAP.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009_image022.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009_image022.png
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new file mode 100755
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new file mode 100755
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009_image079.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009_image080.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009_image080.png
new file mode 100755
index 00000000..d2cb5ee3
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009_image080.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009_notes_pane.htm
new file mode 100755
index 00000000..39c42e72
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0009_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>An even higher blow-up of
+  part of the Chr 7 physical map of variation in App expression in brain.<span
+  style="mso-spacerun: yes">&nbsp; </span>The QTL region actually extends from
+  about 119 to 129.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>1. As mentioned
+  in the previous slide another important approach to ranking candidates is
+  based on the number of sequence variants that distinguish the parental
+  strains. If we were sure that the sequences of the gene, its promoter, and
+  its enhancers were identical between the strains then we could discount--but
+  not eliminate--that gene as a candidate. The Gtf3c1 candidate almost falls
+  into this category: of 663 known SNPs in and around this gene, only four
+  differ between C57BL/6J and DBA/2J. Gtf3c1 is essentially
+  identical-by-descent in these strains and is a less likely candidate. In
+  contrast, if the two alleles of the gene have dozens of functional variants
+  in exons, promoters, enhancers, and splice sites, then it becomes a higher
+  priority candidate.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>Of course it
+  only takes a single critical sequence variant to generate downstream effects.
+  The argument above is really about the prior probabilities. Where would you
+  place your bets given the information at hand?</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2.<span
+  style="mso-spacerun: yes">&nbsp; </span>If you scroll down the INTERVAL
+  ANALYST you will find that Ctbp2 is a particularly interesting candidate that
+  contains lots of SNPs (n = 75 and a SNP density of 0.55 SNP/Kb). Ctbp2 is
+  also closer to our QTL peak than was Gtf3c1. Not only does Ctbp2 contain lots
+  of SNPs but it is also is associated with a powerful cis QTL with an LRS of
+  24.2 (divide by 4.61 to get the equivalent LOD score of 5.25).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3.<span
+  style="mso-spacerun: yes">&nbsp; </span>At this high magnification,
+  individual genes are distinct. They are color coded by their density of SNPs.
+  Bright orange represents those genes that have a high SNP density (C57BL/6J
+  versus DBA/2J), black represents genes with low SNP density. Roll the cursor
+  over a gene block and its name will pop up, along with information on exon
+  number.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>4.<span
+  style="mso-spacerun: yes">&nbsp; </span>Beneath the physical map you will
+  find an INTERVAL ANALYST table that lists information on known genes in the
+  region on which you have zoomed the Physical Map.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>5.<span
+  style="mso-spacerun: yes">&nbsp; </span>As always: error-checking is
+  important. Some genes may be missing from the Interval Analyst (recent
+  additions or errors of omission). In this case the Zranb1 gene that is
+  located just proximal to Ctbp2 is not listed in the INTERVAL ANALYST.
+  Double-check the interval using the Genome Browser links (blue and beige
+  horizontal bars) at the top of the PHYSICAL MAP.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0010.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0010.htm
new file mode 100755
index 00000000..91cf9f00
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0010.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: Evaluating Ctbp2 as a candidate QTL for App">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0010.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:0%;left:1.72%;width:106.35%;height:7.24%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;position:absolute;top:12.19%;left:.87%;width:99.12%;
+height:90.24%'><span style='font-family:Verdana;font-size:64%'>Evaluating </span><span
+style='font-family:Verdana;font-size:64%'><i>Ctbp2</i></span><span
+style='font-family:Verdana;font-size:64%'> as a candidate QTL for </span><span
+style='font-family:Verdana;font-size:64%'><i>App</i></span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</div>
+<img border=0 src="slide0010_image082.png" style='position:absolute;top:94.52%;
+left:3.31%;width:96.68%;height:4.24%'><img border=0 src="slide0010_image083.png"
+style='position:absolute;top:7.77%;left:3.31%;width:48.34%;height:40.28%'>
+<div class=O style='position:absolute;top:52.82%;left:55.23%;width:35.76%;
+height:37.98%'><span style='position:absolute;top:0%;left:0%;width:94.81%'><span
+style='font-size:233%;color:#E9EB5D'>This is</span><span style='font-size:233%;
+color:#E9EB5D'><i> the </i></span></span><span style='position:absolute;
+top:16.74%;left:0%;width:95.92%'><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2
+</i></span><span style='font-size:233%;color:#E9EB5D'>cis QTL, </span></span><span
+style='position:absolute;top:33.48%;left:0%;width:98.14%'><span
+style='font-size:233%;color:#E9EB5D'>but is detected </span></span><span
+style='position:absolute;top:49.76%;left:0%;width:94.81%'><span
+style='font-size:233%;color:#E9EB5D'>only in the </span></span><span
+style='position:absolute;top:66.51%;left:0%;width:100.0%'><span
+style='font-size:233%;color:#E9EB5D'>Rosen striatum </span></span><span
+style='position:absolute;top:83.25%;left:0%;width:94.81%'><span
+style='font-size:233%;color:#E9EB5D'>data set.</span><span style='font-size:
+233%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></div>
+<div class=O style='position:absolute;top:16.25%;left:56.02%;width:48.21%;
+height:12.72%'><span style='position:absolute;top:0%;left:0%;width:94.78%'><span
+style='font-size:233%;color:#E9EB5D'>This is</span><span style='font-size:233%;
+color:#E9EB5D'><i> the App QTL </i></span></span><span style='position:absolute;
+top:48.61%;left:0%;width:100.0%'><span style='font-size:233%;color:#E9EB5D'>in
+the INIA data set. </span><span style='font-size:233%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></span></div>
+<img border=0 src="slide0010_image084.png" style='position:absolute;top:39.39%;
+left:3.31%;width:48.47%;height:53.35%'><img border=0
+src="slide0010_image085.png" style='position:absolute;top:10.95%;left:35.36%;
+width:.39%;height:72.79%'><img border=0 src="slide0010_image086.png"
+style='position:absolute;top:10.95%;left:31.52%;width:.39%;height:72.79%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>This slide illustrates one
+  reason why Ctbp2 should be considered a high priority positional candidate
+  gene that may modulate the expression level of App.<span style="mso-spacerun:
+  yes">&nbsp; </span>Ctbp2 is a strong cis QTL in some brain regions (here the
+  data are taken from the striatum).<span style="mso-spacerun: yes">&nbsp;
+  </span>If Ctbp2 contains variants that modulate its own expression then these
+  expression differences may produce many downstream effects. Of course, we now
+  want to know much more about the known biology of Ctbp2. What kind of gene is
+  it? To begin to answer that question we can use a number of resources listed
+  in the LINKS page.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>1.</font><font face=Verdana
+  size=3> The App QTL is bimodal. Perhaps there are actually two causal factors
+  in this region--one close to 123 Mb and the other close to 127 Mb.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>2. The precision of QTL
+  mapping depends on several factors, including the effect size and
+  interactions among QTLs modulating a trait, the number of genetic individuals
+  that are studied, and the distribution of recombinations in the study
+  population.<span style="mso-spacerun: yes">&nbsp; </span>In the case above,
+  the QTL(s) are likely to be confined to the interval from 120 to 132 Mb. The
+  bootstrap test (yellow bars shown in some of the previous slides) can be
+  usual for estimating the consistency of QTL peaks.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0010_image023.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0010_image023.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0010_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0010_notes_pane.htm
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0010_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>This slide illustrates one
+  reason why Ctbp2 should be considered a high priority positional candidate
+  gene that may modulate the expression level of App.<span style="mso-spacerun:
+  yes">&nbsp; </span>Ctbp2 is a strong cis QTL in some brain regions (here the
+  data are taken from the striatum).<span style="mso-spacerun: yes">&nbsp;
+  </span>If Ctbp2 contains variants that modulate its own expression then these
+  expression differences may produce many downstream effects. Of course, we now
+  want to know much more about the known biology of Ctbp2. What kind of gene is
+  it? To begin to answer that question we can use a number of resources listed
+  in the LINKS page.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font face=Verdana
+  size=2> The App QTL is bimodal. Perhaps there are actually two causal factors
+  in this region--one close to 123 Mb and the other close to 127 Mb.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. The precision of QTL
+  mapping depends on several factors, including the effect size and
+  interactions among QTLs modulating a trait, the number of genetic individuals
+  that are studied, and the distribution of recombinations in the study
+  population.<span style="mso-spacerun: yes">&nbsp; </span>In the case above,
+  the QTL(s) are likely to be confined to the interval from 120 to 132 Mb. The
+  bootstrap test (yellow bars shown in some of the previous slides) can be
+  usual for estimating the consistency of QTL peaks.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011.htm
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: Evaluating Ctbp2 using other resources">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0011.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:0%;left:1.72%;width:101.05%;height:8.65%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;position:absolute;top:18.36%;left:.91%;width:97.9%;
+height:75.51%'><span style='font-family:Verdana;font-size:64%'>Evaluating </span><span
+style='font-family:Verdana;font-size:64%'><i>Ctbp2</i></span><span
+style='font-family:Verdana;font-size:64%'> using other resources</span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</div>
+<img border=0 src="slide0011_image087.png" style='position:absolute;top:10.07%;
+left:1.72%;width:48.21%;height:53.35%'><img border=0
+src="slide0011_image088.png" style='position:absolute;top:40.81%;left:19.2%;
+width:78.54%;height:54.77%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Ctbp2 should also be
+  considered a high priority biological candidate gene responsible for
+  modulating App expression levels. The C-terminal binding protein 2 is a
+  transcriptional co-repressor also known as Ribeye.</font><font
+  face=Times-Roman size=3> The gene produces two transcripts encoding distinct
+  proteins. The short form is a transcriptional repressor that binds a
+  Pro-X-Asp-Leu-Ser peptide motif and interacts with several transcription
+  factors including EVI1, ZFPM1, and ZFHX1A (aka TCF8, deltaEF1). The longer
+  isoform is a major component of specialized synapses in photoreceptors. Both
+  proteins contain a NAD+ binding domain similar to NAD+-dependent
+  2-hydroxyacid dehydrogenases.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>1. To find out more about
+  CTBP2 protein and the Ctbp2 gene, link to iHOP at
+  http://www.pdg.cnb.uam.es/UniPub/iHOP/ and type in CTBP2</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>Try Arrowsmith at
+  http://arrowsmith.psych.uic.edu/cgi-test/arrowsmith_uic/pubsmith.cgi</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>2. Both APP and CTBP2 are
+  involved in oxidoreducatase activity or Notch signaling. To establish this
+  common gene ontology visit NCBI<span style="mso-spacerun: yes">&nbsp;
+  </span>http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene and enter each gene
+  symbol.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>3. You can get interesting
+  hints regarding Ctbp2 expression partners by examining the genetic
+  correlations between Ctbp2 probe set 1422887_a_at and all other transcripts
+  on the M430 Affymetrix array. Use the Striatum data set because we already
+  know from previous work (the previous slide) that this gene is a cis
+  QTL.<span style="mso-spacerun: yes">&nbsp; </span>You should be able to show
+  that Ctbp2 and Notch3 have antagonistic expression patterns in striatum. The
+  negative genetic correlation with E2f4 is even stronger. The transcript also
+  has a high positive genetic correlation with Rdh14. Of particular interest
+  with respect to APP protein processing, Ctbp2 covaries positively with Bace2
+  (the transcript of the beta site APP-cleaving enzyme 2).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_image025.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_image025.png
new file mode 100755
index 00000000..d29a333f
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_image025.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_image087.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_image087.png
new file mode 100755
index 00000000..a6ca39ae
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_image087.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_image088.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_image088.png
new file mode 100755
index 00000000..c17a41bc
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_image088.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_notes_pane.htm
new file mode 100755
index 00000000..c287e06e
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0011_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Ctbp2 should also be
+  considered a high priority biological candidate gene responsible for
+  modulating App expression levels. The C-terminal binding protein 2 is a
+  transcriptional co-repressor also known as Ribeye.</font><font
+  face=Times-Roman size=2> The gene produces two transcripts encoding distinct
+  proteins. The short form is a transcriptional repressor that binds a
+  Pro-X-Asp-Leu-Ser peptide motif and interacts with several transcription
+  factors including EVI1, ZFPM1, and ZFHX1A (aka TCF8, deltaEF1). The longer
+  isoform is a major component of specialized synapses in photoreceptors. Both
+  proteins contain a NAD+ binding domain similar to NAD+-dependent
+  2-hydroxyacid dehydrogenases.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>1. To find out more about
+  CTBP2 protein and the Ctbp2 gene, link to iHOP at
+  http://www.pdg.cnb.uam.es/UniPub/iHOP/ and type in CTBP2</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Try Arrowsmith at
+  http://arrowsmith.psych.uic.edu/cgi-test/arrowsmith_uic/pubsmith.cgi</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. Both APP and CTBP2 are
+  involved in oxidoreducatase activity or Notch signaling. To establish this
+  common gene ontology visit NCBI<span style="mso-spacerun: yes">&nbsp;
+  </span>http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene and enter each gene
+  symbol.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3. You can get interesting
+  hints regarding Ctbp2 expression partners by examining the genetic
+  correlations between Ctbp2 probe set 1422887_a_at and all other transcripts
+  on the M430 Affymetrix array. Use the Striatum data set because we already
+  know from previous work (the previous slide) that this gene is a cis
+  QTL.<span style="mso-spacerun: yes">&nbsp; </span>You should be able to show
+  that Ctbp2 and Notch3 have antagonistic expression patterns in striatum. The
+  negative genetic correlation with E2f4 is even stronger. The transcript also
+  has a high positive genetic correlation with Rdh14. Of particular interest
+  with respect to APP protein processing, Ctbp2 covaries positively with Bace2
+  (the transcript of the beta site APP-cleaving enzyme 2).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0012.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0012.htm
new file mode 100755
index 00000000..852e722e
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0012.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0012.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:-.35%;left:3.31%;width:93.64%;height:14.48%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:292;
+mso-text-indent-alt:0;position:absolute;top:0%;left:1.13%;width:97.59%;
+height:51.21%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Summary of Part 2</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:15.01%;left:5.96%;width:101.19%;height:31.09%'>
+<div class=O1 style='mso-margin-left-alt:432'></div>
+<div class=O2 style='mso-margin-left-alt:720'></div>
+<div class=O3 style='mso-margin-left-alt:1008'></div>
+<div class=O4 style='mso-margin-left-alt:1296'></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:0%;
+left:0%;width:86.25%;height:14.2%'><span style='position:absolute;top:0%;
+left:2.88%;width:97.11%'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.96%;font-family:Arial'>1.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Covered the basics of QTL
+analysis and mapping.<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:14.2%;
+left:0%;width:86.25%;height:14.2%'><span style='position:absolute;top:0%;
+left:2.88%;width:97.11%'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.96%;font-family:Arial'>2.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Reviewed difference between
+genetic and physical maps.<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:28.4%;
+left:0%;width:100.0%;height:42.61%'><span style='position:absolute;top:0%;
+left:2.48%;width:97.51%'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.55%;font-family:Arial'>3.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Discussed interpreting features
+of QTL maps including the LRS function, </span></span><span style='position:
+absolute;top:33.33%;left:2.48%;width:91.23%'><span style='font-family:"Gill Sans";
+font-size:167%;color:#E9EB5D;mso-color-index:3'>the additive effect function,
+the bootstrap bars, and the permutation </span></span><span style='position:
+absolute;top:68.0%;left:2.48%;width:83.76%'><span style='font-family:"Gill Sans";
+font-size:167%;color:#E9EB5D;mso-color-index:3'>thresholds.<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:71.59%;
+left:0%;width:88.35%;height:14.2%'><span style='position:absolute;top:0%;
+left:2.81%;width:97.18%'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.89%;font-family:Arial'>4.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Illustrated techniques to
+generate a list of positional candidates.<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:85.79%;
+left:0%;width:86.25%;height:14.2%'><span style='position:absolute;top:0%;
+left:2.88%;width:97.11%'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.96%;font-family:Arial'>5.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Discussed some factors used to
+evaluate candidate genes.</span></span></div>
+</div>
+<div class=O style='position:absolute;top:58.65%;left:5.96%;width:106.22%;
+height:22.26%'><span style='position:absolute;top:0%;left:0%;width:84.53%'><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'>What does a QTL signify? A good QTL is a claim that a particular </span></span><span
+style='position:absolute;top:19.84%;left:0%;width:96.38%'><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'>chromosomal region contains a causal source of variation in the phenotype. </span></span><span
+style='position:absolute;top:39.68%;left:0%;width:100.0%'><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'>The importance of this hypothesis depends on the quality and relevance of
+the </span></span><span style='position:absolute;top:59.52%;left:0%;width:90.89%'><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'>phenotype and the statistical strength of the QTL. As usual, test and be </span></span><span
+style='position:absolute;top:79.36%;left:0%;width:84.53%'><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'>skeptical.</span></span></div>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0012_image026.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0012_image026.png
new file mode 100755
index 00000000..a0675ffc
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0012_image026.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0012_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0012_notes_pane.htm
new file mode 100755
index 00000000..895ab29b
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0012_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>By clicking on the
+  CORRELATION of the Atcay transcript to the App transcript, you can generate a
+  Correlation plot between these two transcripts. In this App and Atcay
+  scatterplot, each point is a strain mean value. For example, BXD33 and BXD8
+  have low App and Atcay expressions. The two parental strains and the F1 are
+  also included in this plot.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0013.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0013.htm
new file mode 100755
index 00000000..f8993810
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0013.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Test Questions">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0013.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:0%;left:1.72%;width:101.05%;height:8.65%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;position:absolute;top:18.36%;left:.91%;width:97.9%;
+height:75.51%'><span style='font-family:Verdana;font-size:64%'>Test Questions</span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</div>
+<div class=O style='position:absolute;top:11.83%;left:4.37%;width:108.34%;
+height:6.53%'><span style='font-size:233%;color:#E9EB5D'>1. Evaluate candidates
+for the Chr 3 </span><span style='font-size:233%;color:#E9EB5D'><i>App</i></span><span
+style='font-size:233%;color:#E9EB5D'> QTL.</span><span style='font-size:233%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+<div class=O style='position:absolute;top:24.02%;left:4.9%;width:100.92%;
+height:12.72%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
+style='font-size:233%;color:#E9EB5D'>2. Do </span><span style='font-size:233%;
+color:#E9EB5D'><i>App</i></span><span style='font-size:233%;color:#E9EB5D'> and
+</span><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2</i></span><span
+style='font-size:233%;color:#E9EB5D'> expression share any </span></span><span
+style='position:absolute;top:50.0%;left:0%;width:93.43%'><span
+style='font-size:233%;color:#E9EB5D'>other QTLs beside that on Chr 7?</span><span
+style='font-size:233%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></div>
+<div class=O style='position:absolute;top:43.99%;left:4.9%;width:102.91%;
+height:19.08%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
+style='font-size:233%;color:#E9EB5D'>3. Can you exploit literature mining tools
+to </span></span><span style='position:absolute;top:33.33%;left:0%;width:98.45%'><span
+style='font-size:233%;color:#E9EB5D'>find a strong relationship between </span><span
+style='font-size:233%;color:#E9EB5D'><i>App</i></span><span style='font-size:
+233%;color:#E9EB5D'> and </span></span><span style='position:absolute;
+top:65.74%;left:0%;width:91.63%'><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2</i></span><span
+style='font-size:233%;color:#E9EB5D'>? </span><span style='font-size:233%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></div>
+<div class=O style='position:absolute;top:69.08%;left:4.9%;width:110.19%;
+height:12.72%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
+style='font-size:233%;color:#E9EB5D'>4. Why might the cis QTL for </span><span
+style='font-size:233%;color:#E9EB5D'><i>Ctbp2</i></span><span style='font-size:
+233%;color:#E9EB5D'> expression </span></span><span style='position:absolute;
+top:50.0%;left:0%;width:89.66%'><span style='font-size:233%;color:#E9EB5D'>only
+be detected in the striatum data set?</span><span style='font-size:233%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></div>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0013_image027.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0013_image027.png
new file mode 100755
index 00000000..ba473846
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0013_image027.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0013_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0013_notes_pane.htm
new file mode 100755
index 00000000..190b8653
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0013_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>A group of traits from
+  many different databases can be selected and brought together for joint
+  analysis. In this case all of the content of the BXD SELECTIONS is from a
+  single BRAIN database, the top 20 neighbors of the App transcript from the
+  Correlation Results table. Eight of these neighbors plus App is shown in the
+  slide.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font
+  face=Helvetica size=2>All of items in the BXD SELECTIONS were selected using
+  the SELECT ALL button</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. The buttons at the
+  top (and bottom) of this page can do some cool stuff. We will work with
+  NETWORK GRAPH first.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>3. Think of the
+  SELECTIONS as your shopping cart. You go to different aisles in the
+  supermarket to acquire different types of items of interest. These could
+  include transcripts, classical phenotypes (longevity, brain weight, prepulse
+  inhibition, iron levels in midbrain). �Checking out� in this case involves
+  doing some analysis with the items in the cart.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>4. Different tools
+  handle different numbers of items. Most will handle up to 100 traits.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014.htm
new file mode 100755
index 00000000..e5de4030
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: Contact for comments and improvements:">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0014.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:2.29%;left:2.51%;width:94.43%;height:9.89%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";position:absolute;top:19.64%;
+left:1.4%;width:97.47%;height:69.64%'><span style='font-size:73%'><i>Contact
+for comments and improvements:</i></span><span style='font-size:82%;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:16.6%;left:6.62%;width:90.19%;height:24.38%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";position:absolute;top:0%;
+left:1.46%;width:97.35%;height:100.0%'><span style='position:absolute;
+top:0%;left:0%;width:100.0%'><span style='font-size:82%'>rwilliam@nb.utmem.edu<br>
+</span></span><span
+style='position:absolute;top:34.05%;left:4.67%;width:95.47%'><span
+style='font-size:82%'><br>
+</span></span><span style='position:absolute;
+top:68.11%;left:4.67%;width:95.47%'><span style='font-size:82%;mso-special-format:
+lastCR;display:none'><br>
+</span></span></div>
+</div>
+<div class=O style='position:absolute;top:27.56%;left:9.4%;width:50.59%;
+height:7.77%'><span style='font-family:"Gill Sans";font-size:300%;color:#E9EB5D'>kmanly@utmem.edu</span></div>
+<div class=O style='position:absolute;top:83.56%;left:4.37%;width:108.34%;
+height:15.9%'><span style='position:absolute;top:0%;left:0%;width:90.83%'><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D'>The </span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D'><i>App</i></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D'> findings reviewed
+in this presentation are part of an </span></span><span style='position:absolute;
+top:33.33%;left:0%;width:100.0%'><span style='font-family:"Gill Sans";
+font-size:200%;color:#E9EB5D'>ongoing study by R. Williams. R. Homayouni, and
+R. Clark (July 15, </span></span><span style='position:absolute;top:66.66%;
+left:0%;width:84.35%'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>2005)</span><span style='font-family:"Gill Sans";font-size:300%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><br>
+</span></span></div>
+</div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>END</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014_image029.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014_image029.png
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new file mode 100755
index 00000000..8d72b4c1
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014_image031.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014_image033.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014_image033.png
new file mode 100755
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014_notes_pane.htm
new file mode 100755
index 00000000..4a9d3b57
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0014_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>END</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015.htm
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+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
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+}//-->
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+</script>
+<div><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-277 0 -1";mso-margin-left-alt:232;
+mso-text-indent-alt:0;mso-line-spacing:"-277 0 -1";mso-margin-left-alt:232;
+mso-text-indent-alt:0'><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:73%'>The GeneNetwork and WebQTL
+: PART 2<span style="mso-spacerun: yes">&nbsp;&nbsp; </span><br>
+</span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-size:73%'>link to www.genenetwork.org</span><span
+style='font-size:73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer></div>
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+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+mso-text-raise:0%'><script>
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+</script>
+<div style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
+56'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.46 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'>Part 1. How to study </span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>expression variation </span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>and genetic correlation </span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>(slides 2&#8211;17)<br>
+</span></span></layer></div>
+</layer><script>
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+56'><script>
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+</script><span
+style='text-align:left'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'>Part 2. Discovering </span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
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+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>(slides 18&#8211;29)</span></span></layer></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.17 * g_height; myleft = 0.74 * g_width; myheight = 0.64 * g_height; mywidth = 0.23 * g_width;
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+<div><script language=JavaScript><!--
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+yy = 0.17 * g_height;
+ht = 0.64 * g_height;
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+document.write(
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+//-->
+</script></div>
+</layer><script>
+	mytop = 0.75 * g_height; myleft = 0.74 * g_width; myheight = 0.14 * g_height; mywidth = 0.1 * g_width;
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+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
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+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
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+</script>
+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:"Arial Rounded MT Bold";font-size:233%;color:#6E6E6E'>RNA</span><span
+style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
+display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.08 * g_width;
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+</script>
+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
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+</span></div>
+</layer></div>
+</layer><script>
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+</script>
+<div></div>
+</layer><script>
+	mytop = 0.5 * g_height; myleft = 0.48 * g_width; myheight = 0.13 * g_height; mywidth = 0.25 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.48 * g_width;
+yy = 0.5 * g_height;
+ht = 0.13 * g_height;
+wd = 0.25 * g_width;
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+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Part 2: Discovering
+   upstream modulators and quantitative trait loci (QTLs). A quantitative trait
+   locus is a chromosomal region that harbors one or a few polymorphic gene
+   loci that influence a trait. We are going to be looking for QTLs that
+   modulate the steady state expression level of App in the adult mouse
+   forebrain.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015_image034.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015_image034.png
new file mode 100755
index 00000000..dafa2898
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015_image034.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015_image035.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015_image035.png
new file mode 100755
index 00000000..35566d47
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015_image035.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015_notes_pane.htm
new file mode 100755
index 00000000..c4c4ec6d
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0015_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Going back to the Trait
+  Data and Analysis Form window, we have computed the correlations between
+  strain variation in App expression level and other classical phenotypes that
+  have already been measured in many of the same BXD strains.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font
+  face=Helvetica size=2>The number of common strains varies widely--in this
+  case from 14 to 23 strains.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. We can add these
+  traits (four are selected) to our BXD SELECTIONS window.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0016.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0016.htm
new file mode 100755
index 00000000..ea69ff33
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0016.htm
@@ -0,0 +1,919 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
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+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.02 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-134 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Times;font-size:117%;color:white;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.35 * g_width; myheight = 0.05 * g_height; mywidth = 0.29 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.02 * g_height; mywidth = 0.29 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Times;font-size:117%;
+color:white;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.02 * g_height; mywidth = 0.29 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Times;font-size:117%;
+color:white;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.02 * g_height; myleft = -0.05 * g_width; myheight = 0.11 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-240 0 0";mso-margin-left-alt:
+16;mso-text-indent-alt:16'><span style='font-family:Arial;font-size:267%;
+color:#E9EB5D'>How to make recombinant inbred strains (RI)</span><span
+style='font-family:Arial;font-size:150%;color:aqua;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0.06 * g_width; myheight = 0.03 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-160 0 0";mso-margin-left-alt:
+16;mso-text-indent-alt:16'><span style='font-family:Arial;font-size:150%;
+color:aqua;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.28 * g_height; myleft = 0.45 * g_width; myheight = 0.01 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.45 * g_width;
+yy = 0.28 * g_height;
+ht = 0.01 * g_height;
+wd = 0.18 * g_width;
+document.write(
+'<img border=0 src="slide0002_image003.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.28 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.28 * g_width;
+yy = 0.2 * g_height;
+ht = 0.11 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0002_image004.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.15 * g_height; myleft = 0.25 * g_width; myheight = 0.09 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>C57BL/6J
+(B)<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.3 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.3 * g_width;
+yy = 0.2 * g_height;
+ht = 0.11 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0002_image005.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.15 * g_height; myleft = 0.62 * g_width; myheight = 0.09 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>DBA/2J
+(D)<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.66 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.66 * g_width;
+yy = 0.2 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image006.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.23 * g_width; myheight = 0.01 * g_height; mywidth = 0.5 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.23 * g_width;
+yy = 0.35 * g_height;
+ht = 0.01 * g_height;
+wd = 0.5 * g_width;
+document.write(
+'<img border=0 src="slide0002_image007.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.24 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.24 * g_width;
+yy = 0.35 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image008.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.4 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.4 * g_width;
+yy = 0.35 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image009.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.57 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.57 * g_width;
+yy = 0.35 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image010.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.74 * g_width; myheight = 0.03 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.74 * g_width;
+yy = 0.35 * g_height;
+ht = 0.03 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image011.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.42 * g_height; myleft = 0.05 * g_width; myheight = 0.12 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.1 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:200%;color:#FFFF99'><b>F1<br>
+</b></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:200%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.39 * g_height; myleft = 0.22 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.22 * g_width;
+yy = 0.39 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image012.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.39 * g_height; myleft = 0.38 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.38 * g_width;
+yy = 0.39 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image013.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.39 * g_height; myleft = 0.55 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.55 * g_width;
+yy = 0.39 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image014.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.39 * g_height; myleft = 0.72 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.72 * g_width;
+yy = 0.39 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image015.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.43 * g_height; myleft = 0.43 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.43 * g_width;
+yy = 0.43 * g_height;
+ht = 0.03 * g_height;
+wd = 0.11 * g_width;
+document.write(
+'<img border=0 src="slide0002_image016.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.6 * g_height; myleft = 0.2 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.2 * g_width;
+yy = 0.6 * g_height;
+ht = 0.03 * g_height;
+wd = 0.09 * g_width;
+document.write(
+'<img border=0 src="slide0002_image017.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.71 * g_height; myleft = 0.58 * g_width; myheight = 0.26 * g_height; mywidth = 0.2 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.03 * g_height; myleft = 0.01 * g_width; myheight = 0.22 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.15 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:117%;
+color:#FFFF99'><b>20 generations </b></span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:117%;
+color:#FFFF99'><b>brother-sister </b></span></span></layer><script>
+	mytop = 0.12 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:117%;
+color:#FFFF99'><b>matings</b></span><span style='font-family:Arial;font-size:
+233%;color:#FFFF99;display:none'><b><br>
+</b></span></span></layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:233%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.6 * g_height; myleft = 0.5 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.5 * g_width;
+yy = 0.6 * g_height;
+ht = 0.03 * g_height;
+wd = 0.09 * g_width;
+document.write(
+'<img border=0 src="slide0002_image018.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.62 * g_height; myleft = 0.54 * g_width; myheight = 0.28 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.54 * g_width;
+yy = 0.62 * g_height;
+ht = 0.28 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image019.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.61 * g_height; myleft = 0.79 * g_width; myheight = 0.03 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.79 * g_width;
+yy = 0.61 * g_height;
+ht = 0.03 * g_height;
+wd = 0.1 * g_width;
+document.write(
+'<img border=0 src="slide0002_image020.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.62 * g_height; myleft = 0.83 * g_width; myheight = 0.28 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.83 * g_width;
+yy = 0.62 * g_height;
+ht = 0.28 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image021.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.21 * g_width; myheight = 0.09 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>BXD1</span><span
+style='font-family:Arial;font-size:150%;color:#484848;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#484848;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.51 * g_width; myheight = 0.09 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>BXD2<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.8 * g_width; myheight = 0.05 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%;mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>BXD80</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.9 * g_height; myleft = 0.64 * g_width; myheight = 0.17 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.15 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-341 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:300%;color:#FFFF99'>+ � +<br>
+</span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-341 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:300%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.62 * g_height; myleft = 0.04 * g_width; myheight = 0.12 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.1 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:200%;color:#FFFF99'><b>F2<br>
+</b></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:200%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.18 * g_width; myheight = 0.01 * g_height; mywidth = 0.75 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.18 * g_width;
+yy = 0.54 * g_height;
+ht = 0.01 * g_height;
+wd = 0.75 * g_width;
+document.write(
+'<img border=0 src="slide0002_image022.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.17 * g_width; myheight = 0.03 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.17 * g_width;
+yy = 0.54 * g_height;
+ht = 0.03 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image023.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.32 * g_width; myheight = 0.03 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.32 * g_width;
+yy = 0.54 * g_height;
+ht = 0.03 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image024.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.48 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.48 * g_width;
+yy = 0.54 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image025.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.62 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.62 * g_width;
+yy = 0.54 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image026.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.77 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.77 * g_width;
+yy = 0.54 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image027.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.92 * g_width; myheight = 0.03 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.92 * g_width;
+yy = 0.54 * g_height;
+ht = 0.03 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image028.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.44 * g_height; myleft = 0.49 * g_width; myheight = 0.1 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.49 * g_width;
+yy = 0.44 * g_height;
+ht = 0.1 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0002_image029.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.15 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.15 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image030.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.3 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.3 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image031.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.46 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.46 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image032.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.6 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.6 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image033.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.75 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.75 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image034.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.9 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.9 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0002_image035.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.84 * g_height; myleft = 0.56 * g_width; myheight = 0.01 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.56 * g_width;
+yy = 0.84 * g_height;
+ht = 0.01 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0002_image036.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.8 * g_height; myleft = 0.25 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.25 * g_width;
+yy = 0.8 * g_height;
+ht = 0.11 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0002_image037.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.84 * g_height; myleft = 0.86 * g_width; myheight = 0.02 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.86 * g_width;
+yy = 0.84 * g_height;
+ht = 0.02 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0002_image038.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.75 * g_height; myleft = 0.01 * g_width; myheight = 0.13 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.11 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'><b>BXD RI<br>
+</b></span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'><b>Strain set<br>
+</b></span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.01 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.12 * g_height; myleft = 0.14 * g_width; myheight = 0.06 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.14 * g_width;
+yy = 0.12 * g_height;
+ht = 0.06 * g_height;
+wd = 0.1 * g_width;
+document.write(
+'<img border=0 src="slide0002_image039.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.76 * g_width; myheight = 0.08 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.76 * g_width;
+yy = 0.1 * g_height;
+ht = 0.08 * g_height;
+wd = 0.14 * g_width;
+document.write(
+'<img border=0 src="slide0002_image040.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.17 * g_width; myheight = 0.13 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.11 * g_height; mywidth = 0.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>fully<br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>inbred<br>
+</span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.38 * g_height; myleft = 0.02 * g_width; myheight = 0.09 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>isogenic<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.01 * g_width; myheight = 0.13 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.11 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>hetero-<br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>geneous<br>
+</span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.74 * g_height; myleft = 0.29 * g_width; myheight = 0.21 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.19 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.15 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>Recombined </span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>chromosomes </span></span></layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>are needed for </span></span></layer><script>
+	mytop = 0.12 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>mapping<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.25 * g_width; myheight = 0.09 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>female<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.64 * g_width; myheight = 0.09 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>male<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.3 * g_height; myleft = 0.78 * g_width; myheight = 0.09 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:117%;color:#FFFF99'>chromosome
+pair</span><span style='font-family:Arial;font-size:150%;color:#FFFF99;
+display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.31 * g_height; myleft = 0.65 * g_width; myheight = 0.02 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.65 * g_width;
+yy = 0.31 * g_height;
+ht = 0.02 * g_height;
+wd = 0.12 * g_width;
+document.write(
+'<img border=0 src="slide0002_image041.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.86 * g_height; myleft = 0.03 * g_width; myheight = 0.14 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.12 * g_height; mywidth = 0.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
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+</script></div>
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+//-->
+</script></div>
+</layer><script>
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+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
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+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The next few slides
+   provide a short introduction to mapping the loci that are responsible for
+   variation in a trait such as App expression level. These modulatory regions
+   of the genome are sometimes called quantitative trait loci or QTLs. You may
+   want to do some independent reading on this topic if this is your first
+   exposure to QTL analysis.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The genetic reference
+   population (GRP) of BXD recombinant inbred strains were originally generated
+   about 25 years ago by Benjamin Taylor at The Jackson Laboratory. He crossed
+   female C57BL/6J mice with male DBA/2J mice to generate the F1 and F2
+   progeny. At the bottom of this slide we have schematized one chromosome pair
+   from three of the BXD RI strains.<span style="mso-spacerun: yes">&nbsp;
+   </span>The dashed vertical lines that lead to the final BXD RI lines involve
+   21 full sib matings (about 7 years of breeding). Some lines die out during
+   inbreeding. For example, there is no longer any BXD3 strain.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>1. Over the last decade,
+   our group (Lu Lu and Rob Williams) and Jeremy Peirce and Lee Silver at
+   Princeton have enlarged Ben Taylor�s set. There are now just over 80 BXD
+   strains. They have all been genotyped using about 13,700 markers (SNPs and
+   microsatellites). These markers are used to define the �blue� and �red�
+   regions of the chromosomes as shown in the figure above.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. Chromosomes of RI GRPs
+   usually have about 4 times as many recombinations as those of F2 animals.
+   However, unlike an F2, both chromosomes of an RI are identical. Therefore,
+   50 RI strains contain as many recombinations as 100 F2 animals.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3. BXD43 through BXD100
+   were generated using a special method that resulted in a further doubling of
+   the average recombination density per chromosome. The entire set of 80 BXDs
+   therefore contains as many recombinations as about 260 F2 animals.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0016_image036.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0016_image036.png
new file mode 100755
index 00000000..baa1d807
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0016_image036.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0016_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0016_notes_pane.htm
new file mode 100755
index 00000000..f5776dad
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0016_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>We have computed the
+  Network Graph, now using other types of traits.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Saline Hot Plate Latency
+  is the green node labeled 10020.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Freezing (fear) is the
+  green node labeled 10447.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0017.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0017.htm
new file mode 100755
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+<head>
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+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.73 * g_width;
+yy = 0.16 * g_height;
+ht = 0.05 * g_height;
+wd = 0.14 * g_width;
+document.write(
+'<img border=0 src="slide0003_image055.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0.74 * g_width; myheight = 0.07 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-126 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Gadget;font-size:150%;color:white'>aaaa<br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-126 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Gadget;font-size:150%;color:white;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.71 * g_width; myheight = 0.19 * g_height; mywidth = 0.25 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.24 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.24 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:267%;color:#E2EBF0'>D2 strain</span><span
+style='font-family:Palatino;font-size:333%;color:#FBFDB8;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-family:Palatino;font-size:333%;color:#FBFDB8;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.43 * g_height; myleft = 0.71 * g_width; myheight = 0.19 * g_height; mywidth = 0.25 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.02 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.24 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.24 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:267%;color:#F6BF69'>B6 strain</span><span
+style='font-family:Palatino;font-size:333%;color:#F6BF69;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-family:Palatino;font-size:333%;color:#F6BF69;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.17 * g_height; myleft = 0.31 * g_width; myheight = 0.42 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.31 * g_width;
+yy = 0.17 * g_height;
+ht = 0.42 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0003_image056.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.4 * g_height; myleft = 0.31 * g_width; myheight = 0.03 * g_height; mywidth = 0.39 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.31 * g_width;
+yy = 0.4 * g_height;
+ht = 0.03 * g_height;
+wd = 0.39 * g_width;
+document.write(
+'<img border=0 src="slide0003_image057.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.38 * g_width; myheight = 0.26 * g_height; mywidth = 0.3 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.23 * g_height; mywidth = 0.27 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.13 * g_height; mywidth = 0.27 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-320 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.27 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'><i>amount of
+</i></span></span></layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.27 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'><i>transcript</i></span><span
+style='font-family:Palatino;font-size:367%;color:#E9EB5D;display:none'><br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.14 * g_height; myleft = 0 * g_width; myheight = 0.09 * g_height; mywidth = 0.27 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-422 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-family:Palatino;font-size:367%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0.72 * g_width; myheight = 0.19 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:267%;color:white'>4 </span><span style='font-size:
+233%;color:white'>units</span><span style='font-family:Palatino;font-size:333%;
+color:#E9EB5D;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-family:Palatino;font-size:333%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.29 * g_height; myleft = 0.72 * g_width; myheight = 0.19 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.02 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:267%;color:white'>2</span><span style='font-size:
+233%;color:white'> units</span><span style='font-family:Palatino;font-size:
+333%;color:#E9EB5D;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-family:Palatino;font-size:333%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.15 * g_height; myleft = 0.31 * g_width; myheight = 0.05 * g_height; mywidth = 0.4 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.31 * g_width;
+yy = 0.15 * g_height;
+ht = 0.05 * g_height;
+wd = 0.4 * g_width;
+document.write(
+'<img border=0 src="slide0003_image058.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.17 * g_height; myleft = 0.09 * g_width; myheight = 0.16 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#E2EBF0'>D<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#E2EBF0;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.17 * g_height; myleft = 0.17 * g_width; myheight = 0.16 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#F6BF69'>B<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#F6BF69;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.79 * g_height; myleft = 0.05 * g_width; myheight = 0.13 * g_height; mywidth = 1.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.12 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%;mso-line-spacing:"-256 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;mso-line-spacing:"-256 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E2EBF0'>D</span><span
+style='font-size:233%;color:#E9EB5D'> </span><span style='font-size:200%;
+color:#E9EB5D'>and </span><span style='font-size:233%;color:#F6BF69'>B</span><span
+style='font-size:233%;color:#E9EB5D'> </span><span style='font-size:200%;
+color:#E9EB5D'>may be SNP-like variants in the promoter </span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:200%;color:#E9EB5D'>itself (cis
+QTL) or in </span><span style='font-size:200%;color:#EAEC5E'>upstream genes
+(trans QTLs)</span><span style='font-size:300%;color:#E9EB5D'>.</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.04 * g_width; myheight = 0.16 * g_height; mywidth = 0.22 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.22 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-233 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-size:200%;color:#E9EB5D'>UPSTREAM<br>
+</span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.22 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-233 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-size:200%;color:#E9EB5D'>modulators<br>
+</span></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.01 * g_width; myheight = 0.05 * g_height; mywidth = 0.2 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-233 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-size:200%;color:#E9EB5D;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.44 * g_width; myheight = 0.17 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:300%;color:#E2EBF0'>High<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:300%;color:#E2EBF0;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.63 * g_height; myleft = 0.08 * g_width; myheight = 0.17 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#E2EBF0'>D<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#E2EBF0;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.63 * g_height; myleft = 0.15 * g_width; myheight = 0.17 * g_height; mywidth = 0.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#F6BF69'>B<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#F6BF69;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.71 * g_height; myleft = 0.07 * g_width; myheight = 0.12 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.1 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:200%;color:#E9EB5D'><i>cis QTL</i></span><span
+style='font-size:200%;color:#E9EB5D;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:200%;color:#E9EB5D;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = -0.01 * g_width; myheight = 0.07 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = -0.01 * g_width;
+yy = 0.57 * g_height;
+ht = 0.07 * g_height;
+wd = 1.01 * g_width;
+document.write(
+'<img border=0 src="slide0003_image059.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.44 * g_height; myleft = 0.47 * g_width; myheight = 0.12 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-272 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:233%;color:#F6BF69'>Low<br>
+</span></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-272 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:233%;color:#F6BF69;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.58 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.04 * g_height; mywidth = 1.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%;mso-line-spacing:"-200 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;mso-line-spacing:"-200 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17'><span style='font-family:Gadget;font-size:167%;
+color:white'>&gt;&gt;&gt;&gt;PROMOTER--ATG-Exon1-Intron1-Exon2-Intron2 -
+etc-3'UTR &gt;&gt;&gt;&gt;&gt;</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.37 * g_height; myleft = 0.08 * g_width; myheight = 0.2 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.08 * g_width;
+yy = 0.37 * g_height;
+ht = 0.2 * g_height;
+wd = 0.13 * g_width;
+document.write(
+'<img border=0 src="slide0003_image060.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.4 * g_height; myleft = 0.1 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:"\30D2\30E9\30AE\30CE\89D2\30B4 Pro W3";
+font-size:233%;color:white'><b>&#4;</b></span><span style='font-family:Palatino;
+font-size:233%;color:white;display:none'><b><br>
+</b></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Palatino;font-size:233%;
+color:white;mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.4 * g_height; myleft = 0.18 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:"\30D2\30E9\30AE\30CE\89D2\30B4 Pro W3";
+font-size:233%;color:white'><b>&#4;</b></span><span style='font-family:Palatino;
+font-size:233%;color:white;display:none'><b><br>
+</b></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Palatino;font-size:233%;
+color:white;mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.33 * g_height; myleft = 0.08 * g_width; myheight = 0.2 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.08 * g_width;
+yy = 0.33 * g_height;
+ht = 0.2 * g_height;
+wd = 0.13 * g_width;
+document.write(
+'<img border=0 src="slide0003_image061.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.36 * g_height; myleft = 0.18 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:"\30D2\30E9\30AE\30CE\89D2\30B4 Pro W3";
+font-size:233%;color:white'><b>&#4;</b></span><span style='font-family:Palatino;
+font-size:233%;color:white;display:none'><b><br>
+</b></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Palatino;font-size:233%;
+color:white;mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.36 * g_height; myleft = 0.1 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:"\30D2\30E9\30AE\30CE\89D2\30B4 Pro W3";
+font-size:233%;color:white'><b>&#4;</b></span><span style='font-family:Palatino;
+font-size:233%;color:white;display:none'><b><br>
+</b></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Palatino;font-size:233%;
+color:white;mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.37 * g_height; myleft = 0.2 * g_width; myheight = 0.12 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Palatino;font-size:233%;
+color:white;display:none'><b><br>
+</b></span></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Palatino;font-size:233%;
+color:white;mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.27 * g_height; myleft = 0.04 * g_width; myheight = 0.21 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.04 * g_width;
+yy = 0.27 * g_height;
+ht = 0.21 * g_height;
+wd = 0.21 * g_width;
+document.write(
+'<img border=0 src="slide0003_image062.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.27 * g_height; myleft = 0.05 * g_width; myheight = 0.12 * g_height; mywidth = 0.2 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.1 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:200%;color:#E9EB5D'><i>trans QTL</i></span><span
+style='font-size:200%;color:#E9EB5D;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:200%;color:#E9EB5D;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>This slide is
+   illustrates two major types of QTLs that modulate variability in
+   transcript-relative steady state abundance.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>1. cis QTLs are defined
+   as QTLs that are closely linked to the gene whose transcript is the measured
+   trait. For example, a polymorphism in the promoter that affects binding of a
+   transcription factor. However, cis QTLs can be far upstream or downstream polymorphisms
+   in enhancers or may be in 3� UTR binding sites that affect message
+   stability.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. trans QTLs map far
+   enough away from the location of the gene that gives rise to the transcript
+   that is being measured so that we can be fairly certain that the QTL is not
+   in the gene itself. The most blatant type of trans QTL would be a
+   polymorphism in a transcription factor. But in the majority of cases, the
+   trans QTLs can be far removed in a mechanistic sense from the actual events
+   modulating transcript abundance. That is why there are three overlapping
+   arrows in the figure.<span style="mso-spacerun: yes">&nbsp; </span>The way
+   in which an upstream polymorphism influences a downstream difference in mRNA
+   abundance can be indirect. Effects can:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3><span
+   style="mso-spacerun: yes">&nbsp;&nbsp; </span>a.<span style="mso-spacerun:
+   yes">&nbsp; </span>cross tissue types (a polymorphic liver enzyme may affect
+   CNS gene expression)</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3><span
+   style="mso-spacerun: yes">&nbsp;&nbsp; </span>b.<span style="mso-spacerun:
+   yes">&nbsp; </span>cross time (the modulator is only expressed for one day
+   during development but has permanent effects in adults)</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3><span
+   style="mso-spacerun: yes">&nbsp;&nbsp; </span>c.<span style="mso-spacerun:
+   yes">&nbsp; </span>may be contingent on environmental factors (heat shock
+   may trigger the expression of a polymorphic factor that affects mRNA
+   abundance).</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018.htm
new file mode 100755
index 00000000..a2c8a7db
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018.htm
@@ -0,0 +1,115 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Discovering upstream modulatory loci">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
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+<script language=JavaScript>
+function font_size() {
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+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0018.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
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+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
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+document.SlideLayer.clip.left = 0;
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+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
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+</script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.38 * g_height; myleft = 0.05 * g_width; myheight = 0.45 * g_height; mywidth = 0.84 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.05 * g_width;
+yy = 0.38 * g_height;
+ht = 0.45 * g_height;
+wd = 0.84 * g_width;
+document.write(
+'<img border=0 src="slide0004_image063.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0.02 * g_width; myheight = 0.08 * g_height; mywidth = 0.93 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.06 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><span
+style='font-family:Verdana;font-size:64%'>Discovering upstream modulatory loci</span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.18 * g_width; myheight = 0.25 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.18 * g_width;
+yy = 0.2 * g_height;
+ht = 0.25 * g_height;
+wd = 0.19 * g_width;
+document.write(
+'<img border=0 src="slide0004_image064.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.32 * g_height; myleft = 0.78 * g_width; myheight = 0.25 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.78 * g_width;
+yy = 0.32 * g_height;
+ht = 0.25 * g_height;
+wd = 0.19 * g_width;
+document.write(
+'<img border=0 src="slide0004_image065.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Please bring the Trait
+   Data and Analysis window to the front and look for the Interval Mapping
+   button. Confirm that you are back to the trait amyloid beta precursor
+   protein.<span style="mso-spacerun: yes">&nbsp; </span>If so, then just click
+   the button.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notice that the default
+   for:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Select Chrs (chromosomes)
+   is ALL</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Select Mapping Scale is
+   set to GENETIC</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Options: Permutation test
+   YES<span style="mso-spacerun: yes">&nbsp; </span>(2000 is the default
+   number)</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Options: Bootstrap test
+   YES (2000 is the default number)</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018_image037.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018_image037.png
new file mode 100755
index 00000000..a1cb20e4
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018_image037.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018_image038.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018_image038.png
new file mode 100755
index 00000000..e06bd0db
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018_image038.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018_notes_pane.htm
new file mode 100755
index 00000000..9e0445f3
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0018_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Part 2: Discovering
+  upstream modulators and quantitative trait loci (QTLs). A quantitative trait
+  locus is a chromosomal region that harbors one or a few polymorphic gene loci
+  that influence a trait. We are going to be looking for QTLs that modulate the
+  steady state expression level of App in the adult mouse forebrain.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0019.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0019.htm
new file mode 100755
index 00000000..43fc12fd
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0019.htm
@@ -0,0 +1,155 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: WebQTL searches for upstream controllers">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0019.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
+g_origHeight = 566;
+g_origWidth = 755;
+g_width = window.innerWidth - 10;
+g_height = window.innerHeight - 10;
+
+g_top = 0;
+g_left = 0;
+
+if ( g_width < ( g_origWidth * g_height /g_origHeight ) )
+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
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+}
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+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.08 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'><i>WebQTL
+searches for upstream controllers</i></span><span style='font-family:Verdana;
+font-size:73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.71 * g_height; myleft = 0.34 * g_width; myheight = 0.19 * g_height; mywidth = 0.45 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.18 * g_height; mywidth = 0.44 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.44 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D'><i>App maps
+on Chr 16 (blue </i></span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.44 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D'><i>arrow
+points to the orange </i></span></span></layer><script>
+	mytop = 0.09 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.38 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D'><i>triangle)
+but the best </i></span></span></layer><script>
+	mytop = 0.13 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.38 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D'><i>locus is
+on Chr 7.</i></span><span style='font-size:233%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.01 * g_width; myheight = 0.53 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.08 * g_height;
+ht = 0.53 * g_height;
+wd = 0.98 * g_width;
+document.write(
+'<img border=0 src="slide0005_image066.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.46 * g_height; myleft = 0.15 * g_width; myheight = 0.53 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.15 * g_width;
+yy = 0.46 * g_height;
+ht = 0.53 * g_height;
+wd = 0.15 * g_width;
+document.write(
+'<img border=0 src="slide0005_image067.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.46 * g_height; myleft = 0.8 * g_width; myheight = 0.53 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.8 * g_width;
+yy = 0.46 * g_height;
+ht = 0.53 * g_height;
+wd = 0.1 * g_width;
+document.write(
+'<img border=0 src="slide0005_image068.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.41 * g_height; myleft = 0.76 * g_width; myheight = 0.22 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.76 * g_width;
+yy = 0.41 * g_height;
+ht = 0.22 * g_height;
+wd = 0.11 * g_width;
+document.write(
+'<img border=0 src="slide0005_image069.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.41 * g_height; myleft = 0.29 * g_width; myheight = 0.24 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.29 * g_width;
+yy = 0.41 * g_height;
+ht = 0.24 * g_height;
+wd = 0.12 * g_width;
+document.write(
+'<img border=0 src="slide0005_image070.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>This is a major output
+   type: a so-called full-genome interval map.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The X-axis represents all
+   19 autosomes and the X chromosome as if they were laid end to end with short
+   gaps between the telomere of one chromosome and the centromere of the next
+   chromosome (mouse chromosomes only have a single long arm and the centromere
+   represents the origin of each chromosome for numerical purpose: 0
+   centimorgans at almost 0 megabases). The blue labels along the bottom of the
+   figure list a subset of the 3795 markers that were used in mapping.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The thick blue wavy line
+   running across chromosomes summarizes the strength of association between
+   variation in the phenotype (App expression differences) and the two
+   genotypes of all markers and the intervals between markers (hence, interval
+   mapping).<span style="mso-spacerun: yes">&nbsp; </span>The height of the
+   wave (blue Y-axis to the left) provides the likelihood ratio statistic
+   (LRS). Divide by 4.61 to convert these values to LOD scores.<span
+   style="mso-spacerun: yes">&nbsp; </span>Or you can read them as a
+   chi-square-like statistic.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The red line and the red
+   axis to the far right provide an estimate of the effect that a QTL has on
+   expression of App (this estimate of the so-called additive effect tends to
+   be too high). If the red line is below the X-axis then this means that the
+   allele inherited from C57BL/6J (B6 or B) at a particular marker is
+   associated with higher values. If the red line is above the X-axis then the
+   DBA/2J allele (D2 or D) is associated with higher trait values. Multiply the
+   additive effect size by 2 to estimate the difference between the set of
+   strains that have the B/B genotype and those that have the D/D genotype at a
+   specific marker. For example, on distal Chr 7 the red line peaks at a value
+   of about 0.2. That means that this region of chromosome 2 is responsible for
+   a 0.4 unit expression difference between B/B strains and the D/D strains.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The yellow histogram
+   bars: These summarize the results of a whole-genome bootstrap of the trait
+   that is performed 1000 times. What is a bootstrap? A bootstrap provides a
+   method to evaluate whether results are robust. If we drop out one strain, do
+   we still get the same results? When mapping quantitative traits, each strain
+   normally gets one equally weighted vote. But using the bootstrap procedure,
+   we give each strain a random weighting factor of between 0 and 1.<span
+   style="mso-spacerun: yes">&nbsp; </span>We then remap the trait and find THE
+   SINGLE BEST LRS VALUE per bootstrap. We do this 1000 times. In this example,
+   most bootstrap results cluster on Chr 3 and Chr 7 under the LRS peaks. That
+   is somewhat reassuring. But notice that a substantial number of bootstrap
+   are scattered around on other chromosomes. About 30% of the bootstrap
+   resamples have a peak on Chr 7. That is pretty good, but does makes us
+   realize that the sample we are working with is still quite small and
+   fragile.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The horizontal dashed
+   lines at 10.5 and 17.3 are the likelihood ratio statistic (LRS) values
+   associated with the suggestive and significant genome-wide probabilities
+   that were established by permutations of phenotypes across genotypes. We
+   shuffle randomly 2000 times and obtain a distribution of peak LRS scores to
+   generate a null distribution. Five percent of the time, one of these
+   permuted data sets will have a peak LRS higher than 17.3. We call that level
+   the 0.05 significance threshold for a whole genome scan. The p = 0.67 point
+   is the suggestive level, and corresponds to the green dashed line.<span
+   style="mso-spacerun: yes">&nbsp; </span>These thresholds are conservative
+   for transcripts that have expression variation that is highly heritable. The
+   putative or suggestive QTL on Chr 3 is probably more than just suggestive.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>One other point: the
+   mapping procedure we use is computationally very fast, but it is relatively
+   simple. We are not looking for gene-gene interactions and we are not fitting
+   multiple QTLs in combinations. Consider this QTL analysis a first pass that
+   will highlight hot spots and warm spots that are worth following up on using
+   more sophisticated models.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>CLICKABLE REGIONS:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>1. If you click on the
+   Chromosome number then you will generate a new map just for that chromosome.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. If you click on the
+   body of the map, say on the blue line, then you will generate a view on a 10
+   Mb window of that part of the genome from the UCSC Genome Browser web site.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3. If you click on a
+   marker symbol, then you will generate a new Trait data and Analysis window
+   with the genotypes loaded into the window just like any other trait. More on
+   this in Section 3.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>4. You can drag these
+   maps off of the browser window and onto your desktop. They will be saved as
+   PNG or PDF files. You can import them into Photoshop or other programs.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>5. There is also an
+   option at the bottom of the page to download a 2X higher resolution image of
+   this plot for papers and presentations.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>6. You can also download
+   the results of the analysis in a text format</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0019_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The next few slides
+  provide a short introduction to mapping the loci that are responsible for
+  variation in a trait such as App expression level. These modulatory regions
+  of the genome are sometimes called quantitative trait loci or QTLs. You may
+  want to do some independent reading on this topic if this is your first
+  exposure to QTL analysis.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The genetic reference
+  population (GRP) of BXD recombinant inbred strains were originally generated
+  about 25 years ago by Benjamin Taylor at The Jackson Laboratory. He crossed
+  female C57BL/6J mice with male DBA/2J mice to generate the F1 and F2 progeny.
+  At the bottom of this slide we have schematized one chromosome pair from
+  three of the BXD RI strains.<span style="mso-spacerun: yes">&nbsp; </span>The
+  dashed vertical lines that lead to the final BXD RI lines involve 21 full sib
+  matings (about 7 years of breeding). Some lines die out during inbreeding.
+  For example, there is no longer any BXD3 strain.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>1. Over the last decade,
+  our group (Lu Lu and Rob Williams) and Jeremy Peirce and Lee Silver at
+  Princeton have enlarged Ben Taylor�s set. There are now just over 80 BXD
+  strains. They have all been genotyped using about 13,700 markers (SNPs and
+  microsatellites). These markers are used to define the �blue� and �red�
+  regions of the chromosomes as shown in the figure above.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. Chromosomes of RI GRPs
+  usually have about 4 times as many recombinations as those of F2 animals.
+  However, unlike an F2, both chromosomes of an RI are identical. Therefore, 50
+  RI strains contain as many recombinations as 100 F2 animals.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3. BXD43 through BXD100
+  were generated using a special method that resulted in a further doubling of
+  the average recombination density per chromosome. The entire set of 80 BXDs
+  therefore contains as many recombinations as about 260 F2 animals.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
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+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: Genetic versus Physical maps for App expression">
+<style media=print>
+<!--.sld
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+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0020.htm");
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'><i>Genetic
+versus Physical maps for App expression</i></span><span style='font-family:
+Verdana;font-size:73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
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+document.write(
+'<img border=0 src="slide0006_image071.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.35 * g_height;
+ht = 0.54 * g_height;
+wd = 0.98 * g_width;
+document.write(
+'<img border=0 src="slide0006_image072.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.91 * g_height; myleft = 0.05 * g_width; myheight = 0.07 * g_height; mywidth = 0.95 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.95 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:117%;color:#E9EB5D'><i>The
+difference between genetic and physical scale is analogous to measuring the </i></span></span></layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:117%;color:#E9EB5D'><i>separation
+between New York and Boston in either travel hours or kilometers</i></span><span
+style='font-size:150%;color:#E9EB5D'><i>.</i></span><span style='font-size:
+167%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The map on the top has an
+   X-axis scale based on frequency of recombinations events between markers (B
+   to D transitions, see slide 19 for a color-coded example). These so-called
+   genetic maps are scaled in centimorgan (recombinations per 100 gametes). In
+   contrast, the physical map shown below the genetic map has an X-axis scale
+   based on DNA length measured in nucleotides or base-pairs. Notice the large
+   difference between the two maps in the size of Chr 19 (large on the genetic
+   scale but small on the physical scale).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Also notice the large
+   difference in the width of the chromosome 7 QTL peak. In mice,
+   recombinations occur with higher frequency toward the telomeric side (right
+   side) of each chromosome. As a result, genetic maps are stretched out more
+   toward the telomere relative to a physical map. The QTL on distal Chr 7 is
+   therefore actually more precisely mapped than might appear looking at the
+   genetic map.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The physical scale is
+   becoming more useful than the genetic scale primarily because many other
+   data types can be easily superimposed on a physical map. You will see more
+   examples in the next several slides.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
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+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0020_image098.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0020_image098.png
new file mode 100755
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0020_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0020_notes_pane.htm
new file mode 100755
index 00000000..68c0fb55
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0020_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>This slide is
+  illustrates two major types of QTLs that modulate variability in
+  transcript-relative steady state abundance.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>1. cis QTLs are defined
+  as QTLs that are closely linked to the gene whose transcript is the measured
+  trait. For example, a polymorphism in the promoter that affects binding of a
+  transcription factor. However, cis QTLs can be far upstream or downstream polymorphisms
+  in enhancers or may be in 3� UTR binding sites that affect message stability.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. trans QTLs map far
+  enough away from the location of the gene that gives rise to the transcript
+  that is being measured so that we can be fairly certain that the QTL is not
+  in the gene itself. The most blatant type of trans QTL would be a
+  polymorphism in a transcription factor. But in the majority of cases, the
+  trans QTLs can be far removed in a mechanistic sense from the actual events
+  modulating transcript abundance. That is why there are three overlapping
+  arrows in the figure.<span style="mso-spacerun: yes">&nbsp; </span>The way in
+  which an upstream polymorphism influences a downstream difference in mRNA
+  abundance can be indirect. Effects can:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2><span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>a.<span style="mso-spacerun:
+  yes">&nbsp; </span>cross tissue types (a polymorphic liver enzyme may affect
+  CNS gene expression)</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2><span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>b.<span style="mso-spacerun:
+  yes">&nbsp; </span>cross time (the modulator is only expressed for one day
+  during development but has permanent effects in adults)</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2><span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>c.<span style="mso-spacerun:
+  yes">&nbsp; </span>may be contingent on environmental factors (heat shock may
+  trigger the expression of a polymorphic factor that affects mRNA abundance).</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021.htm
new file mode 100755
index 00000000..c7854145
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021.htm
@@ -0,0 +1,110 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Physical map for distal chromosome 7">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0021.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
+g_origHeight = 566;
+g_origWidth = 755;
+g_width = window.innerWidth - 10;
+g_height = window.innerHeight - 10;
+
+g_top = 0;
+g_left = 0;
+
+if ( g_width < ( g_origWidth * g_height /g_origHeight ) )
+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.08 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Physical
+map for distal chromosome 7</span><span style='font-family:Verdana;font-size:
+73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.05 * g_width; myheight = 0.06 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.04 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><span style='font-size:167%;color:#E9EB5D'>Distal Chr 7 from
+~120 and 132 Mb may modulate</span><span style='font-size:167%;color:#E9EB5D'><i>
+App</i></span><span style='font-size:200%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.93 * g_height; myleft = 0.06 * g_width; myheight = 0.03 * g_height; mywidth = 0.75 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.06 * g_width;
+yy = 0.93 * g_height;
+ht = 0.03 * g_height;
+wd = 0.75 * g_width;
+document.write(
+'<img border=0 src="slide0007_image073.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.15 * g_height; myleft = 0.06 * g_width; myheight = 0.75 * g_height; mywidth = 0.68 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.06 * g_width;
+yy = 0.15 * g_height;
+ht = 0.75 * g_height;
+wd = 0.68 * g_width;
+document.write(
+'<img border=0 src="slide0007_image075.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Physical map of variation
+   in App expression in brain on distal Chr 7 (a blow up of the whole-genome
+   map on the previous slide).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Verdana size=3> You can now see that the X-axis is on a physical scale
+   of megabases (Mb). The QTL peak is roughly between 120 and 132 Mb.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. The small irregular
+   colored blocks and marks toward the top of the map mark the locations of
+   genes superimposed on the physical map. Neighboring genes are offset
+   slightly in the vertical axis for display purpose. Note one region of very
+   high gene density from about 120 to 123 Mb.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3. The orange hash marks
+   along the X-axis represent the number of single nucleotide polymorphisms
+   that distinguish the two parental strains (C57BL/6J and DBA/2J) from each
+   other. We call this the SNP seismograph track (see Glossary for more
+   details). Regions with low numbers of SNPs have closely matched sequences
+   and are less likely to contain QTLs.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>4. As before, the thin
+   red line shows the additive effect size. By convention the positive values
+   signify the D alleles are associated with higher expression of App in this
+   region of Chr 7 than the B alleles. The maximum effect size is about +0.20
+   log2 expression units per D allele. The differences been the BB and DD
+   genotypes (BB and DD because each strain has two alleles; one per
+   chromosome) is therefore about 2^0.4 = 1.32 or a 32% increment in DD
+   relative to BB at this locus.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>5. If you scroll just
+   under the Physical Map you will see text that reads �DISPLAY from XXX Mb TO
+   YYY Mb�..�<span style="mso-spacerun: yes">&nbsp; </span>These physical maps
+   are zoomable, a feature we will exploit to evaluate candidate genes in this
+   QTL interval.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_image099.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_image099.png
new file mode 100755
index 00000000..891bc06c
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_image099.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_image100.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_image100.png
new file mode 100755
index 00000000..8905caa6
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_image100.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_image101.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_image101.png
new file mode 100755
index 00000000..7f5a5295
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_image101.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_notes_pane.htm
new file mode 100755
index 00000000..b1988954
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0021_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Please bring the Trait
+  Data and Analysis window to the front and look for the Interval Mapping
+  button. Confirm that you are back to the trait amyloid beta precursor
+  protein.<span style="mso-spacerun: yes">&nbsp; </span>If so, then just click
+  the button.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notice that the default
+  for:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Select Chrs (chromosomes)
+  is ALL</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Select Mapping Scale is
+  set to GENETIC</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Options: Permutation test
+  YES<span style="mso-spacerun: yes">&nbsp; </span>(2000 is the default number)</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Options: Bootstrap test
+  YES (2000 is the default number)</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0022.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0022.htm
new file mode 100755
index 00000000..25d9a02e
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0022.htm
@@ -0,0 +1,134 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Evaluating candidate genes">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0022.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
+g_origHeight = 566;
+g_origWidth = 755;
+g_width = window.innerWidth - 10;
+g_height = window.innerHeight - 10;
+
+g_top = 0;
+g_left = 0;
+
+if ( g_width < ( g_origWidth * g_height /g_origHeight ) )
+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
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+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
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+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
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+</script></div>
+</layer><script>
+	mytop = 0.34 * g_height; myleft = 0.01 * g_width; myheight = 0.61 * g_height; mywidth = 0.97 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.34 * g_height;
+ht = 0.61 * g_height;
+wd = 0.97 * g_width;
+document.write(
+'<img border=0 src="slide0008_image076.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = -0.01 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.93 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.06 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><span
+style='font-family:Verdana;font-size:64%'>Evaluating candidate genes</span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.01 * g_width; myheight = 0.22 * g_height; mywidth = 0.34 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.08 * g_height;
+ht = 0.22 * g_height;
+wd = 0.34 * g_width;
+document.write(
+'<img border=0 src="slide0008_image077.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0.69 * g_width; myheight = 0.17 * g_height; mywidth = 0.33 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.16 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center'><span style='font-size:200%;color:#E9EB5D'><i>Right
+position<br>
+</i></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-size:200%;color:#E9EB5D'><i>and
+high </i></span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-size:200%;color:#E9EB5D'><i>correlation</i></span></span></layer></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.17 * g_height; myleft = 0.75 * g_width; myheight = 0.14 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.12 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center'><span style='font-size:267%;color:#E9EB5D'><i><span
+style="mso-spacerun: yes">&nbsp;</span></i></span><span style='font-size:200%;
+color:#E9EB5D'><i>= better<br>
+</i></span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center'><span style='font-size:200%;color:#E9EB5D'><i>candidates</i></span></div>
+</layer></div>
+</layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4><b>Evaluating
+   candidate genes (CHECKED BOXES) responsible for variability in APP
+   expression:</b></font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>A large number
+   of genes are usually in the QTL interval and are therefore POSITIONAL
+   CANDIDATES, but they will differ greatly in their biological and
+   bioinformatic plausibility. Assume that the QTL has been located between 119
+   and 131 Mb (12 Mb). There will typically be 12 to 15 genes per Mb, so we
+   might need to evaluate several hundred positional candidates. In this
+   particular case there are about 100 known genes in this interval. Eight of
+   these are highlighted in the table above with check marks in the boxes to
+   the left.<span style="mso-spacerun: yes">&nbsp; </span>We need to highlight
+   and objectively score the biologically relevant subset of all 100 positional
+   candidate genes. We could look through gene ontologies and expression levels
+   to help us shorten the list. An alternate way available using WebQTL is to
+   generate a list of those genes in this interval that have transcripts that
+   co-vary in expression with App expression. That is what the table shows.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>1. To replicate
+   this table go back to the Trait Data and Analysis Form. Choose to sort
+   correlations by POSITION and select RETURN = 500. Then scroll down the list
+   to Chr 7 and review the subset of positional candidates that share
+   expression with App. You should see a list similar to that shown above.
+   Gtf3c1 is a good biological candidate and has a high covariation in
+   expression with App.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>2. Caveat:<span
+   style="mso-spacerun: yes">&nbsp;&nbsp; </span>Of course, the gene or genes
+   that control App expression may not be in this list. A protein coding
+   difference might be the ultimate cause of variation in App transcript level
+   and the expression covariation might be close to zero. Our list may also
+   simply be missing the right transcript since the microarray is not truly
+   comprehensive. Furthermore, even if the list contains the QTL gene, an
+   expression difference may only have been expressed early in development or
+   even in another tissue such as liver. While it is important to recognize
+   these caveats, it is equally important to devise a rational way to rank
+   candidates given existing data. Coexpression is one of several criteria used
+   to evaluate positional candidates. We will see others in the next slide.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>3. We can also
+   assess the likelihood that candidates contain functional polymorphism in
+   promoters and enhancers that affect their expression simply by mapping the
+   transcripts of all candidate genes to see if they �map back� to the location
+   of gene itself. A transcript that maps to its own location is referred to as
+   a cis QTL. We essentially ask: Which of the transcripts listed in the
+   Correlation Table above (from Gtf3c1 to Zranb1) has variation in expression
+   that maps to Chr 7 at about 120 Mb?<span style="mso-spacerun: yes">&nbsp;
+   </span>The logic of this search is that if a gene controls the level of its
+   own expression it is also much more likely to generate other downstream
+   effects. The Gtf3c1 transcript is a weak cis QTL with a local LRS maximum of
+   about 7.0 (D alleles are high). That is just about sufficient to declare it
+   to be a cis QTL. [No whole genome correction is required and a point-wise
+   p-value of 0.05 is the appropriate test. A p-value of 0.05 is roughly
+   equivalent to an LRS of 6.0 (LOD = 1.3).]</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0022_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0022_notes_pane.htm
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@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>This is a major output
+  type: a so-called full-genome interval map.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The X-axis represents all
+  19 autosomes and the X chromosome as if they were laid end to end with short
+  gaps between the telomere of one chromosome and the centromere of the next
+  chromosome (mouse chromosomes only have a single long arm and the centromere
+  represents the origin of each chromosome for numerical purpose: 0
+  centimorgans at almost 0 megabases). The blue labels along the bottom of the
+  figure list a subset of the 3795 markers that were used in mapping.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The thick blue wavy line
+  running across chromosomes summarizes the strength of association between
+  variation in the phenotype (App expression differences) and the two genotypes
+  of all markers and the intervals between markers (hence, interval mapping).<span
+  style="mso-spacerun: yes">&nbsp; </span>The height of the wave (blue Y-axis
+  to the left) provides the likelihood ratio statistic (LRS). Divide by 4.61 to
+  convert these values to LOD scores.<span style="mso-spacerun: yes">&nbsp;
+  </span>Or you can read them as a chi-square-like statistic.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The red line and the red
+  axis to the far right provides an estimate of the effect that a QTL has on
+  expression of App (this estimate of the so-called additive effect tends to be
+  too high). If the red line is below the X-axis then this means that the allele
+  inherited from C57BL/6J (B6 or B) at a particular marker is associated with
+  higher values. If the red line is above the X-axis then the DBA/2J allele (D2
+  or D) is associated with higher trait values. Multiply the additive effect
+  size by 2 to estimate the difference between the set of strains that have the
+  B/B genotype and those that have the D/D genotype at a specific marker. For
+  example, on distal Chr 7 the red line peaks at a value of about 0.2. That
+  means that this region of chromosome 2 is responsible for a 0.4 unit
+  expression difference between B/B strains and the D/D strains.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The yellow histogram bars:
+  These summarize the results of a whole-genome bootstrap of the trait that is
+  performed 1000 times. What is a bootstrap? A bootstrap provides a method to
+  evaluate whether results are robust. If we drop out one strain, do we still
+  get the same results? When mapping quantitative traits, each strain normally
+  gets one equally weighted vote. But using the bootstrap procedure, we give
+  each strain a random weighting factor of between 0 and 1.<span
+  style="mso-spacerun: yes">&nbsp; </span>We then remap the trait and find THE
+  SINGLE BEST LRS VALUE per bootstrap. We do this 1000 times. In this example,
+  most bootstrap results cluster on Chr 3 and Chr 7 under the LRS peaks. That
+  is somewhat reassuring. But notice that a substantial number of bootstrap are
+  scattered around on other chromosomes. About 30% of the bootstrap resamples
+  have a peak on Chr 7. That is pretty good, but does makes us realize that the
+  sample we are working with is still quite small and fragile.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The horizontal dashed
+  lines at 10.5 and 17.3 are the likelihood ratio statistic (LRS) values
+  associated with the suggestive and significant genome-wide probabilities that
+  were established by permutations of phenotypes across genotypes. We shuffle
+  randomly 2000 times and obtain a distribution of peak LRS scores to generate
+  a null distribution. Five percent of the time, one of these permuted data
+  sets will have a peak LRS higher than 17.3. We call that level the 0.05
+  significance threshold for a whole genome scan. The p = 0.67 point is the the
+  suggestive level, and corresponds to the green dashed line.<span
+  style="mso-spacerun: yes">&nbsp; </span>These thresholds are conservative for
+  transcripts that have expression variation that is highly heritable. The
+  putative or suggestive QTL on Chr 3 is probably more than just suggestive.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>One other point: the
+  mapping procedure we use is computationally very fast, but it is relatively
+  simple. We are not looking for gene-gene interactions and we are not fitting
+  multiple QTLs in combinations. Consider this QTL analysis a first pass that
+  will highlight hot spots and warm spots that are worth following up on using
+  more sophisticated models.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>CLICKABLE REGIONS:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>1. If you click on the
+  Chromosome number then you will generate a new map just for that chromosome.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. If you click on the
+  body of the map, say on the blue line, then you will generate a view on a 10
+  Mb window of that part of the genome from the UCSC Genome Browser web site.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3. If you click on a
+  marker symbol, then you will generate a new Trait data and Analysis window
+  with the genotypes loaded into the window just like any other trait. More on
+  this in Section 3.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>4. You can drag these maps
+  off of the browser window and onto your desktop. They will be saved as PNG or
+  PDF files. You can import them into Photoshop or other programs.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>5. There is also an option
+  at the bottom of the page to download a 2X higher resolution image of this
+  plot for papers and presentations.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>6. You can also download
+  the results of the analysis in a text format</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
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+<meta name=ProgId content=PowerPoint.Slide>
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+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
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+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.08 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
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+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Physical
+maps are zoomable</span><span style='font-family:Verdana;font-size:73%;
+mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.03 * g_width; myheight = 0.41 * g_height; mywidth = 0.89 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.03 * g_width;
+yy = 0.08 * g_height;
+ht = 0.41 * g_height;
+wd = 0.89 * g_width;
+document.write(
+'<img border=0 src="slide0009_image078.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.44 * g_height; myleft = 0.07 * g_width; myheight = 0.48 * g_height; mywidth = 0.42 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.07 * g_width;
+yy = 0.44 * g_height;
+ht = 0.48 * g_height;
+wd = 0.42 * g_width;
+document.write(
+'<img border=0 src="slide0009_image079.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.94 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.97 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0 * g_width;
+yy = 0.94 * g_height;
+ht = 0.03 * g_height;
+wd = 0.97 * g_width;
+document.write(
+'<img border=0 src="slide0009_image080.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>An even higher blow-up of
+   part of the Chr 7 physical map of variation in App expression in brain.<span
+   style="mso-spacerun: yes">&nbsp; </span>The QTL region actually extends from
+   about 119 to 129.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>1. As mentioned
+   in the previous slide another important approach to ranking candidates is
+   based on the number of sequence variants that distinguish the parental
+   strains. If we were sure that the sequences of the gene, its promoter, and
+   its enhancers were identical between the strains then we could discount--but
+   not eliminate--that gene as a candidate. The Gtf3c1 candidate almost falls
+   into this category: of 663 known SNPs in and around this gene, only four
+   differ between C57BL/6J and DBA/2J. Gtf3c1 is essentially
+   identical-by-descent in these strains and is a less likely candidate. In
+   contrast, if the two alleles of the gene have dozens of functional variants
+   in exons, promoters, enhancers, and splice sites, then it becomes a higher
+   priority candidate.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>Of course it
+   only takes a single critical sequence variant to generate downstream
+   effects. The argument above is really about the prior probabilities. Where
+   would you place your bets given the information at hand?</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2.<span
+   style="mso-spacerun: yes">&nbsp; </span>If you scroll down the INTERVAL
+   ANALYST you will find that Ctbp2 is a particularly interesting candidate
+   that contains lots of SNPs (n = 75 and a SNP density of 0.55 SNP/Kb). Ctbp2
+   is also closer to our QTL peak than was Gtf3c1. Not only does Ctbp2 contain
+   lots of SNPs but it is also is associated with a powerful cis QTL with an
+   LRS of 24.2 (divide by 4.61 to get the equivalent LOD score of 5.25).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3.<span
+   style="mso-spacerun: yes">&nbsp; </span>At this high magnification,
+   individual genes are distinct. They are color coded by their density of
+   SNPs. Bright orange represents those genes that have a high SNP density
+   (C57BL/6J versus DBA/2J), black represents genes with low SNP density. Roll
+   the cursor over a gene block and its name will pop up, along with
+   information on exon number.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>4.<span
+   style="mso-spacerun: yes">&nbsp; </span>Beneath the physical map you will
+   find an INTERVAL ANALYST table that lists information on known genes in the
+   region on which you have zoomed the Physical Map.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>5.<span
+   style="mso-spacerun: yes">&nbsp; </span>As always: error-checking is
+   important. Some genes may be missing from the Interval Analyst (recent
+   additions or errors of omission). In this case the Zranb1 gene that is
+   located just proximal to Ctbp2 is not listed in the INTERVAL ANALYST.
+   Double-check the interval using the Genome Browser links (blue and beige
+   horizontal bars) at the top of the PHYSICAL MAP.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0023_image107.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0023_image107.png
new file mode 100755
index 00000000..0e63f836
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0023_image107.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0023_image108.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0023_image108.png
new file mode 100755
index 00000000..3c44c2ab
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0023_image108.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0023_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0023_notes_pane.htm
new file mode 100755
index 00000000..010f3332
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0023_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The map on the top has an
+  X-axis scale based on frequency of recombinations events between markers (B
+  to D transitions, see slide 19 for a color-coded example). These so-called
+  genetic maps are scaled in centimorgan (recombinations per 100 gametes). In contrast,
+  the physical map shown below the genetic map has an X-axis scale based on DNA
+  length measured in nucleotides or base-pairs. Notice the large difference
+  between the two maps in the size of Chr 19 (large on the genetic scale but
+  small on the physical scale).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Also notice the large
+  difference in the width of the chromosome 7 QTL peak. In mice, recombinations
+  occur with higher frequency toward the telomeric side (righ sidet) of each
+  chromosome. As a result, genetic maps are stretched out more toward the
+  telomere relative to a physical map. The QTL on distal Chr 7 is therefore
+  actually more precisely mapped than might appear looking at the genetic map.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>The physical scale is
+  becoming more useful than the genetic scale primarily because many other data
+  types can be easily superimposed on a physical map. You will see more
+  examples in the next several slides.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0024.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0024.htm
new file mode 100755
index 00000000..bf2b9b3c
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0024.htm
@@ -0,0 +1,167 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: Evaluating Ctbp2 as a candidate QTL for App">
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+	height:4.5in !important;
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+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
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+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0024.htm");
+}//-->
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+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
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+g_left = 0;
+
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+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 1.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Evaluating
+</span><span style='font-family:Verdana;font-size:64%'><i>Ctbp2</i></span><span
+style='font-family:Verdana;font-size:64%'> as a candidate QTL for </span><span
+style='font-family:Verdana;font-size:64%'><i>App</i></span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.94 * g_height; myleft = 0.03 * g_width; myheight = 0.04 * g_height; mywidth = 0.96 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.03 * g_width;
+yy = 0.94 * g_height;
+ht = 0.04 * g_height;
+wd = 0.96 * g_width;
+document.write(
+'<img border=0 src="slide0010_image082.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.03 * g_width; myheight = 0.4 * g_height; mywidth = 0.48 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.03 * g_width;
+yy = 0.07 * g_height;
+ht = 0.4 * g_height;
+wd = 0.48 * g_width;
+document.write(
+'<img border=0 src="slide0010_image083.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.52 * g_height; myleft = 0.55 * g_width; myheight = 0.37 * g_height; mywidth = 0.35 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.33 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>This is</span><span
+style='font-size:233%;color:#E9EB5D'><i> the </i></span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.34 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2 </i></span><span
+style='font-size:233%;color:#E9EB5D'>cis QTL, </span></span></layer><script>
+	mytop = 0.12 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.35 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>but is
+detected </span></span></layer><script>
+	mytop = 0.18 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.33 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>only in the </span></span></layer><script>
+	mytop = 0.25 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.35 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>Rosen
+striatum </span></span></layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>data set.</span><span
+style='font-size:233%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0.56 * g_width; myheight = 0.12 * g_height; mywidth = 0.48 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.45 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>This is</span><span
+style='font-size:233%;color:#E9EB5D'><i> the App QTL </i></span></span></layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>in the INIA
+data set. </span><span style='font-size:233%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer><script>
+	mytop = 0.39 * g_height; myleft = 0.03 * g_width; myheight = 0.53 * g_height; mywidth = 0.48 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.03 * g_width;
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+ht = 0.53 * g_height;
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+document.write(
+'<img border=0 src="slide0010_image084.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.35 * g_width; myheight = 0.72 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
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+//-->
+</script></div>
+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.31 * g_width;
+yy = 0.1 * g_height;
+ht = 0.72 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0010_image086.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>This slide illustrates
+   one reason why Ctbp2 should be considered a high priority positional
+   candidate gene that may modulate the expression level of App.<span
+   style="mso-spacerun: yes">&nbsp; </span>Ctbp2 is a strong cis QTL in some
+   brain regions (here the data are taken from the striatum).<span
+   style="mso-spacerun: yes">&nbsp; </span>If Ctbp2 contains variants that
+   modulate its own expression then these expression differences may produce
+   many downstream effects. Of course, we now want to know much more about the
+   known biology of Ctbp2. What kind of gene is it? To begin to answer that
+   question we can use a number of resources listed in the LINKS page.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Verdana size=3> The App QTL is bimodal. Perhaps there are actually two
+   causal factors in this region--one close to 123 Mb and the other close to
+   127 Mb.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. The precision of QTL
+   mapping depends on several factors, including the effect size and
+   interactions among QTLs modulating a trait, the number of genetic
+   individuals that are studied, and the distribution of recombinations in the
+   study population.<span style="mso-spacerun: yes">&nbsp; </span>In the case
+   above, the QTL(s) are likely to be confined to the interval from 120 to 132
+   Mb. The bootstrap test (yellow bars shown in some of the previous slides)
+   can be usual for estimating the consistency of QTL peaks.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0024_image109.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0024_image109.png
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new file mode 100755
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0024_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0024_notes_pane.htm
new file mode 100755
index 00000000..e6f07dec
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0024_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Physical map of variation
+  in App expression in brain on distal Chr 7 (a blow up of the whole-genome map
+  on the previous slide).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font face=Verdana
+  size=2> You can now see that the X-axis is on a physical scale of megabases
+  (Mb). The QTL peak is roughly between 120 and 132 Mb.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. The small irregular
+  colored blocks and marks toward the top of the map mark the locations of
+  genes superimposed on the physical map. Neighboring genes are offset slightly
+  in the vertical axis for display purpose. Note one region of very high gene
+  density from about 120 to 123 Mb.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3. The orange hash marks
+  along the X-axis represent the number of single nucleotide polymorphisms that
+  distinguish the two parental strains (C57BL/6J and DBA/2J) from each other.
+  We call this the SNP seismograph track (see Glossary for more details). Regions
+  with low numbers of SNP have closely matched sequences and are less likely to
+  contain QTLs.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>4. As before, the thin red
+  line shows the additive effect size. By convention the positive values
+  signify the D alleles are associated with higher expression of App in this
+  region of Chr 7 than the B alleles. The maximum effect size is about +0.20
+  log2 expression units per D allele. The differences been the BB and DD
+  genotypes (BB and DD because each strain has two alleles; one per chromosome)
+  is therefore about 2^0.4 = 1.32; or a 32% increment in DD relative to BB at
+  this locus.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>5. If you scroll just
+  under the Physical Map you will see text that reads �DISPLAY from XXX Mb TO
+  YYY Mb�..�<span style="mso-spacerun: yes">&nbsp; </span>These physical maps
+  are zoomable, a feature we will exploit to evaluate candidate genes in this
+  QTL interval.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0025.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0025.htm
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@@ -0,0 +1,104 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: Evaluating Ctbp2 using other resources">
+<style media=print>
+<!--.sld
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+	height:4.5in !important;
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+<script language=JavaScript>
+function font_size() {
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+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0025.htm");
+}//-->
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+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
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+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.08 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Evaluating
+</span><span style='font-family:Verdana;font-size:64%'><i>Ctbp2</i></span><span
+style='font-family:Verdana;font-size:64%'> using other resources</span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.01 * g_width; myheight = 0.53 * g_height; mywidth = 0.48 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.1 * g_height;
+ht = 0.53 * g_height;
+wd = 0.48 * g_width;
+document.write(
+'<img border=0 src="slide0011_image087.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.4 * g_height; myleft = 0.19 * g_width; myheight = 0.54 * g_height; mywidth = 0.78 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.19 * g_width;
+yy = 0.4 * g_height;
+ht = 0.54 * g_height;
+wd = 0.78 * g_width;
+document.write(
+'<img border=0 src="slide0011_image088.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Ctbp2 should also be
+   considered a high priority biological candidate gene responsible for
+   modulating App expression levels. The C-terminal binding protein 2 is a
+   transcriptional co-repressor also known as Ribeye.</font><font
+   face=Times-Roman size=3> The gene produces two transcripts encoding distinct
+   proteins. The short form is a transcriptional repressor that binds a
+   Pro-X-Asp-Leu-Ser peptide motif and interacts with several transcription
+   factors including EVI1, ZFPM1, and ZFHX1A (aka TCF8, deltaEF1). The longer
+   isoform is a major component of specialized synapses in photoreceptors. Both
+   proteins contain a NAD+ binding domain similar to NAD+-dependent
+   2-hydroxyacid dehydrogenases.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>1. To find out more about
+   CTBP2 protein and the Ctbp2 gene, link to iHOP at
+   http://www.pdg.cnb.uam.es/UniPub/iHOP/ and type in CTBP2</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Try Arrowsmith at
+   http://arrowsmith.psych.uic.edu/cgi-test/arrowsmith_uic/pubsmith.cgi</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. Both APP and CTBP2 are
+   involved in oxidoreducatase activity or Notch signaling. To establish this
+   common gene ontology visit NCBI<span style="mso-spacerun: yes">&nbsp;
+   </span>http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene and enter each gene
+   symbol.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3. You can get
+   interesting hints regarding Ctbp2 expression partners by examining the
+   genetic correlations between Ctbp2 probe set 1422887_a_at and all other
+   transcripts on the M430 Affymetrix array. Use the Striatum data set because
+   we already know from previous work (the previous slide) that this gene is a
+   cis QTL.<span style="mso-spacerun: yes">&nbsp; </span>You should be able to
+   show that Ctbp2 and Notch3 have antagonistic expression patterns in
+   striatum. The negative genetic correlation with E2f4 is even stronger. The
+   transcript also has a high positive genetic correlation with Rdh14. Of
+   particular interest with respect to APP protein processing, Ctbp2 covaries
+   positively with Bace2 (the transcript of the beta site APP-cleaving enzyme
+   2).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0025_image112.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0025_image112.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0025_image113.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0025_image113.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0025_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0025_notes_pane.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0025_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4><b>Evaluating
+  candidate genes (CHECKED BOXES) responsible for variability in APP
+  expression:</b></font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>A large number
+  of genes are usually in the QTL interval and are therefore POSITIONAL
+  CANDIDATES, but they will differ greatly in their biological and
+  bioinformatic plausibility. Assume that the QTL has been located between 119
+  and 131 Mb (12 Mb). There will typically be 12 to 15 genes per Mb, so we
+  might need to evaluate several hundred positional candidates. In this
+  particular case there are about 100 known genes in this interval. Eight of
+  these are highlighted in the table above with check marks in the boxes to the
+  left.<span style="mso-spacerun: yes">&nbsp; </span>We need to highlight and
+  objectively score the biologically relevant subset of all 100 positional
+  candidate genes. We could look through gene ontologies and expression levels
+  to help us shorten the list. An alternate way available using WebQTL is to
+  generate a list of those genes in this interval that have transcripts that
+  co-vary in expression with App expression. That is what the table shows.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>1. To replicate
+  this table go back to the Trait Data and Analysis Form. Choose to sort
+  correlations by POSITION and select RETURN = 500. Then scroll down the list
+  to Chr 7 and review the subset of positional candidates that share expression
+  with App. You should see a list similar to that shown above. Gtf3c1 is a good
+  biological candidate and has a high covariation in expression with App.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>2. Caveat:<span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>Of course, the gene or genes
+  that control App expression may not be in this list. A protein coding
+  difference might be the ultimate cause of variation in App transcript level
+  and the expression covariation might be close to zero. Our list may also
+  simply be missing the right transcript since the microarray is not truly
+  comprehensive. Furthermore, even if the list contains the QT gene, an
+  expression difference may only have been expressed early in development or
+  even in another tissue such as liver. While it is important to recognize
+  these caveats, it is equally important to devise a rational way to rank
+  candidates given existing data. Coexpression is one of several criteria used
+  to evaluate positional candidates. We will see others in the next slide.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>3. We can also
+  assess the likelihood that candidates contain functional polymorphism in
+  promoters and enhancers that affect their expression simply by mapping the
+  transcripts of all candidate genes to see if they �map back� to the location
+  of gene itself. A transcript that maps to its own location is referred to as
+  a cis QTL. We essentially ask: Which of the the transcripts listed in the
+  Correlation Table above (from Gtf3c1 to Zranb1) has variation in expression
+  that maps to Chr 7 at about 120 Mb?<span style="mso-spacerun: yes">&nbsp;
+  </span>The logic of this search is that if a gene controls the level of its
+  own expression it is also much more likely to generate other downstream
+  effects. The Gtf3c1 transcript is a weak cis QTL with a local LRS maximum of
+  about 7.0 (D alleles are high). That is just about sufficient to declare it
+  to be a cis QTL. [No whole genome correction is required and a point-wise
+  p-value of 0.05 is the appropriate test. A p-value of 0.05 is roughly
+  equivalent to an LRS of 6.0 (LOD = 1.3).]</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026.htm
new file mode 100755
index 00000000..2ef9b9ff
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026.htm
@@ -0,0 +1,139 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
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+		min = window.innerHeight/20;
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+	return min+"pt";
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+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
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+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0026.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
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+
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+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
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+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.03 * g_width; myheight = 0.14 * g_height; mywidth = 0.93 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Summary of Part 2</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.15 * g_height; myleft = 0.05 * g_width; myheight = 0.31 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.87 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.04 * g_height; mywidth = 0.84 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.96%;font-family:Arial'>1.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Covered the basics of QTL
+analysis and mapping.<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.87 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.04 * g_height; mywidth = 0.84 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.96%;font-family:Arial'>2.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Reviewed difference between
+genetic and physical maps.<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.13 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.04 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.55%;font-family:Arial'>3.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Discussed interpreting features
+of QTL maps including the LRS function, </span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0.02 * g_width; myheight = 0.04 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'>the additive effect function, the bootstrap
+bars, and the permutation </span></span></layer><script>
+	mytop = 0.09 * g_height; myleft = 0.02 * g_width; myheight = 0.04 * g_height; mywidth = 0.84 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'>thresholds.<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.22 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.89 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.04 * g_height; mywidth = 0.86 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.89%;font-family:Arial'>4.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Illustrated techniques to
+generate a list of positional candidates.<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.26 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.87 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.04 * g_height; mywidth = 0.84 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.96%;font-family:Arial'>5.</span></span><span
+style='font-family:"Gill Sans";font-size:167%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Discussed some factors used to
+evaluate candidate genes.</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.58 * g_height; myleft = 0.05 * g_width; myheight = 0.22 * g_height; mywidth = 1.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.89 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'>What does a QTL signify? A good QTL is a claim
+that a particular </span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'>chromosomal region contains a causal source of
+variation in the phenotype. </span></span></layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 1.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'>The importance of this hypothesis depends on
+the quality and relevance of the </span></span></layer><script>
+	mytop = 0.13 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.96 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'>phenotype and the statistical strength of the
+QTL. As usual, test and be </span></span></layer><script>
+	mytop = 0.17 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.89 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:167%;
+color:#E9EB5D;mso-color-index:3'>skeptical.</span></span></layer></div>
+</layer></div>
+</LAYER>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_image114.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_image114.png
new file mode 100755
index 00000000..93d21c90
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_image114.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_image115.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_image115.png
new file mode 100755
index 00000000..fdc27d23
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_image116.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_image116.png
new file mode 100755
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_notes_pane.htm
new file mode 100755
index 00000000..d335b732
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0026_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Even higher blow-up of
+  part of the Chr 7 physical map of variation in App expression in brain.<span
+  style="mso-spacerun: yes">&nbsp; </span>The QTL region actually extends from
+  about 119 to 129.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>1. As mentioned
+  in the previous slide another important approach to ranking candidates is
+  based on the number of sequence variants that distinguish the parental
+  strains. If we were sure that the sequences of the gene, its promoter, and
+  its enhancers were identical between the strains then we could discount--but
+  not eliminate--that gene as a candidate. The Gtf3c1 candidate almost falls
+  into this category: of 663 known SNPs in and around this gene, only four
+  differ between C57BL/6J and DBA/2J. Gtf3c1 is essentially
+  identical-by-descent in these strains and is a less likely candidate. In
+  contrast, if the two alleles of the gene have dozens of functional variants
+  in exons, promoters, enhancers, and splice sites, then it becomes a higher
+  priority candidate.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face="Times New Roman" size=4>Of course it
+  only takes a single critical sequence variant to generate downstream effects.
+  The argument above is really about the prior probabilities. Where would you
+  place your bets given the information at hand?</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2.<span
+  style="mso-spacerun: yes">&nbsp; </span>If you scroll down the INTERVAL
+  ANALYST you will find that Ctbp2 is a particularly interesting candidate that
+  contains lots of SNPs (n = 75 and a SNP density of 0.55 SNP/Kb). Ctbp2 is
+  also closer to our QTL peak than was Gtf3c1. Not only does Ctbp2 contain lots
+  of SNPs but it is also is associated with a powerful cis QTL with an LRS of
+  24.2 (divide by 4.61 to get the equivalent LOD score of 5.25).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3.<span
+  style="mso-spacerun: yes">&nbsp; </span>At this high magnification,
+  individual genes are distinct. They are color coded by their density of SNPs.
+  Bright orange represents those genes that have a high SNP density (C57BL/6J
+  versus DBA/2J), black represents genes with low SNP density. Roll the cursor
+  over a gene block and its name will pop up, along with information on exon
+  number.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>4.<span
+  style="mso-spacerun: yes">&nbsp; </span>Beneath the physical map you will
+  find an INTERVAL ANALYST table that lists information on known genes in the
+  region on which you have zoomed the Physical Map.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>5.<span
+  style="mso-spacerun: yes">&nbsp; </span>As always: error-checking is
+  important. Some genes may be missing from the Interval Analyst (recent
+  additions or errors of omission). In this case the Zranb1 gene that is
+  located just proximal to Ctbp2 is not listed in the INTERVAL ANALYST.
+  Double-check the interval using the Genome Browser links (blue and beige
+  horizontal bars) at the top of the PHYSICAL MAP.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0027.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0027.htm
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+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Test Questions">
+<style media=print>
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+ LoadNavSld("slide0027.htm");
+}//-->
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+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.08 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Test
+Questions</span><span style='font-family:Verdana;font-size:73%;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.11 * g_height; myleft = 0.04 * g_width; myheight = 0.06 * g_height; mywidth = 1.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><span style='font-size:233%;color:#E9EB5D'>1. Evaluate
+candidates for the Chr 3 </span><span style='font-size:233%;color:#E9EB5D'><i>App</i></span><span
+style='font-size:233%;color:#E9EB5D'> QTL.</span><span style='font-size:233%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer><script>
+	mytop = 0.24 * g_height; myleft = 0.04 * g_width; myheight = 0.12 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>2. Do </span><span
+style='font-size:233%;color:#E9EB5D'><i>App</i></span><span style='font-size:
+233%;color:#E9EB5D'> and </span><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2</i></span><span
+style='font-size:233%;color:#E9EB5D'> expression share any </span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>other QTLs
+beside that on Chr 7?</span><span style='font-size:233%;color:#E9EB5D;
+mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer><script>
+	mytop = 0.43 * g_height; myleft = 0.04 * g_width; myheight = 0.19 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>3. Can you
+exploit literature mining tools to </span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>find a
+strong relationship between </span><span style='font-size:233%;color:#E9EB5D'><i>App</i></span><span
+style='font-size:233%;color:#E9EB5D'> and </span></span></layer><script>
+	mytop = 0.12 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2</i></span><span
+style='font-size:233%;color:#E9EB5D'>? </span><span style='font-size:233%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer><script>
+	mytop = 0.69 * g_height; myleft = 0.04 * g_width; myheight = 0.12 * g_height; mywidth = 1.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>4. Why might
+the cis QTL for </span><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2</i></span><span
+style='font-size:233%;color:#E9EB5D'> expression </span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>only be
+detected in the striatum data set?</span><span style='font-size:233%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer></div>
+</LAYER>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0027_image118.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0027_image118.png
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new file mode 100755
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new file mode 100755
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new file mode 100755
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0027_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0027_notes_pane.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0027_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>This slide illustrates one
+  reason why Ctbp2 should be considered a high priority positional candidate
+  gene that may modulate the expression level of App.<span style="mso-spacerun:
+  yes">&nbsp; </span>Ctbp2 is a strong cis QTL in some brain regions (here the
+  data are taken from the striatum).<span style="mso-spacerun: yes">&nbsp;
+  </span>If Ctbp2 contains variants that modulate its own expression then these
+  expression differencess may produce many downstream effects. Of course, we
+  now want to know much more about the known biology of Ctbp2. What kind of
+  gene is it? To begin to answer that question we can use a number of resources
+  listed in the LINKS page.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font face=Verdana
+  size=2> The App QTL is bimodal. Perhaps there are actually two causal factors
+  in this region--one close to 123 Mb and the other close to 127 Mb.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. The precision of QTL
+  mapping depends on several factors, including the effect size and
+  interactions among QTLs modulating a trait, the number of genetic individuals
+  that are studied, and the distribution of recombinations in the study
+  population.<span style="mso-spacerun: yes">&nbsp; </span>In the case above,
+  the QTL(s) are likely to be confined to the interval from 120 to 132 Mb. The
+  bootstrap test (yellow bars shown in some of the previous slides) can be
+  usual for estimating the consiistency of QTL peaks.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028.htm
new file mode 100755
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@@ -0,0 +1,112 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
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+}
+</script>
+<meta name=Description
+content="Aug-15-05: Contact for comments and improvements:">
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+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.02 * g_height; myleft = 0.02 * g_width; myheight = 0.09 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.06 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><span
+style='font-size:73%'><i>Contact for comments and improvements:</i></span><span
+style='font-size:82%;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0.06 * g_width; myheight = 0.24 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.24 * g_height; mywidth = 0.87 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.87 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:82%'>rwilliam@nb.utmem.edu<br>
+</span></span></layer><script>
+	mytop = 0.08 * g_height; myleft = 0.04 * g_width; myheight = 0.07 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:82%'><br>
+</span></span></layer><script>
+	mytop = 0.16 * g_height; myleft = 0.04 * g_width; myheight = 0.07 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:82%;mso-special-format:lastCR;
+display:none'><br>
+</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.27 * g_height; myleft = 0.09 * g_width; myheight = 0.07 * g_height; mywidth = 0.5 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><span style='font-family:"Gill Sans";font-size:300%;
+color:#E9EB5D'>kmanly@utmem.edu</span></div>
+</layer><script>
+	mytop = 0.83 * g_height; myleft = 0.04 * g_width; myheight = 0.15 * g_height; mywidth = 1.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>The </span><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'><i>App</i></span><span style='font-family:"Gill Sans";
+font-size:200%;color:#E9EB5D'> findings reviewed in this presentation are part
+of an </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>ongoing study by R. Williams. R. Homayouni, and R. Clark (July
+15, </span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>2005)</span><span style='font-family:"Gill Sans";font-size:300%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><br>
+</span></span></layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>END</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028_image123.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028_image123.png
new file mode 100755
index 00000000..a6ca39ae
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028_image123.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028_image124.png b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028_image124.png
new file mode 100755
index 00000000..c17a41bc
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028_image124.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028_notes_pane.htm
new file mode 100755
index 00000000..3693ce68
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0028_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Ctbp2 should also be
+  considered a high priority biological candidate gene responsible for
+  modulating App expression levels. The<span style="mso-spacerun: yes">&nbsp;
+  </span>C-terminal binding protein 2 is a transcriptional co-repressor also
+  known as Ribeye.</font><font face=Times-Roman size=2> The gene produces two
+  transcripts encoding distinct proteins. The short form is a transcriptional
+  repressor that binds a Pro-X-Asp-Leu-Ser peptide motif common to adenoviral
+  oncoprotein E1a and a related motif in BKLF. This short form also interacts<span
+  style="mso-spacerun: yes">&nbsp; </span>with several transcription factors
+  including EVI1, ZFPM1, and<span style="mso-spacerun: yes">&nbsp;&nbsp;
+  </span>ZFHX1A (aka TCF8, deltaEF1). The longer isoform is a major component
+  of specialized synapses in photoreceptors. Both proteins contain a NAD+
+  binding domain similar to NAD+-dependent 2-hydroxyacid dehydrogenases.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>1. To find out more about
+  CTBP2 protein and the Ctbp2 gene, link to iHOP at
+  http://www.pdg.cnb.uam.es/UniPub/iHOP/ and type in CTBP2</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>Try Arrowsmith at
+  http://arrowsmith.psych.uic.edu/cgi-test/arrowsmith_uic/pubsmith.cgi</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>2. Both APP and CTBP2 are
+  involved in oxidoreducatase activity or Notch signalling. To estabilish this
+  common gene ontology visit NCBI<span style="mso-spacerun: yes">&nbsp;
+  </span>http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene<span
+  style="mso-spacerun: yes">&nbsp; </span>and enter each gene symbol.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>3. You can get intersting
+  hints regarding Ctbp2 expression partners by examining the genetic
+  correlations between Ctbp2 probe set 1422887_a_at and all other transcripts
+  on the M430 Affymetrix array. Use the Striatum data set because we already
+  know from previous work (the previous slide) that this gene is a cis
+  QTL.<span style="mso-spacerun: yes">&nbsp; </span>You should be able to show
+  that Ctbp2 and Notch3 have antagonistic expression patterns in striatum. The
+  negative genetic correlation with E2f4 is even stronger. The transcript also
+  has a high positive genetic correlation with Rdh14. Of particualr interest
+  with respect to APP protein processing, Ctbp2 covaries positiviely with Bace2
+  (the transcript of the beta site APP-cleaving enzyme 2).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0029.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0029.htm
new file mode 100755
index 00000000..74ec8342
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0029.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: The GeneNetwork and WebQTL : PART 2    link to www.genenetwork.org">
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+	height:4.5in !important;
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+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0029.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0001.gif border=0 usemap="#Slide0001.gif_map"></center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0030.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0030.htm
new file mode 100755
index 00000000..5562bbe5
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0030.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
+  	}
+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0030.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0002.gif border=0 usemap="#Slide0002.gif_map"></center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0031.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0031.htm
new file mode 100755
index 00000000..63a89597
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0031.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
+  	}
+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0031.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0003.gif border=0 usemap="#Slide0003.gif_map"></center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0031_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0031_notes_pane.htm
new file mode 100755
index 00000000..4a9d3b57
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0031_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>END</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0032.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0032.htm
new file mode 100755
index 00000000..9be3d514
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0032.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Discovering upstream modulatory loci">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0043.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0043.htm
new file mode 100755
index 00000000..e27e4083
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+<head>
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+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jul-18-05>
+<style media=print>
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+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
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+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.14 * g_height; mywidth = 0.93 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> and </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>Atcay</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript scatterplot </span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.05 * g_width; myheight = 0.91 * g_height; mywidth = 0.66 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.05 * g_width;
+yy = 0.08 * g_height;
+ht = 0.91 * g_height;
+wd = 0.66 * g_width;
+document.write(
+'<img border=0 src="slide0012_image026.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>By clicking on the
+   CORRELATION of the Atcay transcript to the App transcript, you can generate
+   a Correlation plot between these two transcripts. In this App and Atcay
+   scatterplot, each point is a strain mean value. For example, BXD33 and BXD8
+   have low App and Atcay expressions. The two parental strains and the F1 are
+   also included in this plot.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0044.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0044.htm
new file mode 100755
index 00000000..ec5c2e3c
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0044.htm
@@ -0,0 +1,93 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jul-18-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
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+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
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+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0044.htm");
+}//-->
+</script>
+</head>
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+document.write(
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+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.96 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript and eight of
+its neighbors</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.09 * g_height; myleft = 0.02 * g_width; myheight = 0.9 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.02 * g_width;
+yy = 0.09 * g_height;
+ht = 0.9 * g_height;
+wd = 0.83 * g_width;
+document.write(
+'<img border=0 src="slide0013_image027.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>A group of traits from
+   many different databases can be selected and brought together for joint
+   analysis. In this case all of the content of the BXD SELECTIONS is from a
+   single BRAIN database, the top 20 neighbors of the App transcript from the
+   Correlation Results table. Eight of these neighbors plus App is shown in the
+   slide.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Helvetica size=3>All of items in the BXD SELECTIONS were selected using
+   the SELECT ALL button</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. The buttons at the
+   top (and bottom) of this page can do some cool stuff. We will work with
+   NETWORK GRAPH first.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>3. Think of the
+   SELECTIONS as your shopping cart. You go to different aisles in the
+   supermarket to acquire different types of items of interest. These could
+   include transcripts, classical phenotypes (longevity, brain weight, prepulse
+   inhibition, iron levels in midbrain). �Checking out� in this case involves
+   doing some analysis with the items in the cart.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>4. Different tools
+   handle different numbers of items. Most will handle up to 100 traits.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0045.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0045.htm
new file mode 100755
index 00000000..4e705866
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0045.htm
@@ -0,0 +1,118 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Jul-18-05: App transcript coexpression neighborhood">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
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+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
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+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0045.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
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+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
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+</layer><script>
+	mytop = 0.82 * g_height; myleft = 0.04 * g_width; myheight = 0.18 * g_height; mywidth = 0.96 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div></div>
+</layer><script>
+	mytop = -0.02 * g_height; myleft = 0 * g_width; myheight = 0.12 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.02 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 1.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%'><span style='font-size:82%'><i>App</i></span><span
+style='font-size:82%'> transcript coexpression neighborhood</span><span
+style='mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.37 * g_height; myleft = 0.01 * g_width; myheight = 0.62 * g_height; mywidth = 0.97 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
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+document.write(
+'<img border=0 src="slide0014_image029.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.11 * g_height; myleft = 0.01 * g_width; myheight = 0.25 * g_height; mywidth = 0.79 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.11 * g_height;
+ht = 0.25 * g_height;
+wd = 0.79 * g_width;
+document.write(
+'<img border=0 src="slide0014_image031.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.81 * g_width; myheight = 0.09 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.81 * g_width;
+yy = 0.1 * g_height;
+ht = 0.09 * g_height;
+wd = 0.18 * g_width;
+document.write(
+'<img border=0 src="slide0014_image033.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Output of the Network
+   Graph. Warm colors (orange and red) are positive correlations above 0.5
+   whereas cool colors (green and blue) are negative correlations. Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Helvetica size=3> All of the nodes (gene/transcripts) on this graph are
+   clickable.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. For this graph the
+   App expression values have �reverted� to their pre-Windsorized values.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>3. To generate this
+   graph, we used the default setting:<span style="mso-spacerun: yes">&nbsp;
+   </span>Size of 16 by 16 inches; Gene Symbols; Don't Show Correlations; Use
+   curved lines (aka �edges�).</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0046.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0046.htm
new file mode 100755
index 00000000..93429543
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0046.htm
@@ -0,0 +1,104 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jul-18-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
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+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0046.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
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+<script>
+
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+
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+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
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+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
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+</script>
+<div><script language=JavaScript><!--
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+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
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+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.14 * g_height; mywidth = 0.93 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Correlations of </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> with classical traits</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.28 * g_height; myleft = 0.04 * g_width; myheight = 0.7 * g_height; mywidth = 0.78 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.04 * g_width;
+yy = 0.28 * g_height;
+ht = 0.7 * g_height;
+wd = 0.78 * g_width;
+document.write(
+'<img border=0 src="slide0015_image034.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.04 * g_width; myheight = 0.19 * g_height; mywidth = 0.33 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.04 * g_width;
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+ht = 0.19 * g_height;
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+document.write(
+'<img border=0 src="slide0015_image035.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Going back to the Trait
+   Data and Analysis Form window, we have computed the correlations between
+   strain variation in App expression level and other classical phenotypes that
+   have already been measured in many of the same BXD strains.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Helvetica size=3>The number of common strains varies widely--in this
+   case from 14 to 23 strains.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. We can add these
+   traits (four are selected) to our BXD SELECTIONS window.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0047.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0047.htm
new file mode 100755
index 00000000..e7568e44
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0047.htm
@@ -0,0 +1,93 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jul-18-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0047.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
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+
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+g_left = (window.innerWidth - g_width) / 2;
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+	if ( size < 1 ) size = 1;
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+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
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+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 0.99 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Network Graph of </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> with classical traits</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.03 * g_width; myheight = 0.9 * g_height; mywidth = 0.88 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.03 * g_width;
+yy = 0.08 * g_height;
+ht = 0.9 * g_height;
+wd = 0.88 * g_width;
+document.write(
+'<img border=0 src="slide0016_image036.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>We have computed the
+   Network Graph, now using other types of traits.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Saline Hot Plate
+   Latency is the green node labeled 10020.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Freezing (fear) is the
+   green node labeled 10447.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0048.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0048.htm
new file mode 100755
index 00000000..f36b1e25
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0048.htm
@@ -0,0 +1,151 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jul-18-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0048.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
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+
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+
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+document.write(
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+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Summary of Part 1:</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.08 * g_width; myheight = 0.47 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.88 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.84%;font-family:Arial'>1.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You have learned the basics
+about searching for traits<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.85 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-3.03%;font-family:Arial'>2.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know some methods to check
+data quality<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.85 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-3.03%;font-family:Arial'>3.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to edit bad or
+suspicious data<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.88 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.85%;font-family:Arial'>4.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to review the
+basic statistics of a trait<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.21 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.74%;font-family:Arial'>5.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
+scattergram between two </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>traits using the Traits Correlation tool<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.31 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.56%;font-family:Arial'>6.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to add items to
+your SELECTIONS window<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.37 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.97 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.57%;font-family:Arial'>7.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
+Network Graph of traits that </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>co-vary. </span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.67 * g_height; myleft = 0.05 * g_width; myheight = 0.26 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>What does genetic covariance mean? The genetic
+covariance can </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>be functional and mechanistic, but it can also
+be due to linkage </span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>disequilibrium. Finally, it can be due to
+sampling error or poor </span></span></layer><script>
+	mytop = 0.16 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>experimental design. Evaluate the biological
+plausibility of </span></span></layer><script>
+	mytop = 0.21 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.89 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>correlations. Test and be skeptical.</span></span></layer></div>
+</layer></div>
+</LAYER>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0049.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0049.htm
new file mode 100755
index 00000000..9d36600a
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0049.htm
@@ -0,0 +1,155 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Jul-18-05: The GeneNetwork and WebQTL : PART 2    link to www.genenetwork.org">
+<style media=print>
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+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
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+ LoadNavSld("slide0049.htm");
+}//-->
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+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
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+//-->
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+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0.02 * g_width; myheight = 0.18 * g_height; mywidth = 0.96 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.02 * g_height; myleft = 0 * g_width; myheight = 0.13 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-277 0 -1";mso-margin-left-alt:232;
+mso-text-indent-alt:0;mso-line-spacing:"-277 0 -1";mso-margin-left-alt:232;
+mso-text-indent-alt:0'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:73%'>The GeneNetwork and WebQTL
+: PART 2<span style="mso-spacerun: yes">&nbsp;&nbsp; </span><br>
+</span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0.04 * g_width; myheight = 0.06 * g_height; mywidth = 0.89 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:73%'>link to www.genenetwork.org</span><span
+style='font-size:73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.24 * g_height; myleft = 0.05 * g_width; myheight = 0.68 * g_height; mywidth = 0.54 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.42 * g_height; mywidth = 0.52 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.21 * g_height; mywidth = 0.52 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
+56'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.46 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
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+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>expression variation </span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0.05 * g_width; myheight = 0.06 * g_height; mywidth = 0.47 * g_width;
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+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>and genetic correlation </span></span></layer><script>
+	mytop = 0.15 * g_height; myleft = 0.05 * g_width; myheight = 0.06 * g_height; mywidth = 0.41 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>(slides 2&#8211;17)<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.25 * g_height; myleft = 0 * g_width; myheight = 0.16 * g_height; mywidth = 0.48 * g_width;
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+</script>
+<div style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
+56'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.46 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'>Part 2. Discovering </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0.05 * g_width; myheight = 0.06 * g_height; mywidth = 0.43 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>upstream modulators </span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0.05 * g_width; myheight = 0.06 * g_height; mywidth = 0.41 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:94%;color:#E9EB5D;mso-color-index:
+3'>(slides 18&#8211;29)</span></span></layer></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.17 * g_height; myleft = 0.74 * g_width; myheight = 0.64 * g_height; mywidth = 0.23 * g_width;
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+</script>
+<div><script language=JavaScript><!--
+xx = 0.74 * g_width;
+yy = 0.17 * g_height;
+ht = 0.64 * g_height;
+wd = 0.23 * g_width;
+document.write(
+'<img border=0 src="slide0018_image037.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.75 * g_height; myleft = 0.74 * g_width; myheight = 0.14 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:"Arial Rounded MT Bold";font-size:233%;color:#6E6E6E'>RNA</span><span
+style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
+display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.82 * g_height; myleft = 0.04 * g_width; myheight = 0.18 * g_height; mywidth = 0.96 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div></div>
+</layer><script>
+	mytop = 0.5 * g_height; myleft = 0.48 * g_width; myheight = 0.13 * g_height; mywidth = 0.25 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.48 * g_width;
+yy = 0.5 * g_height;
+ht = 0.13 * g_height;
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+document.write(
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+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Part 2: Discovering
+   upstream modulators and quantitative trait loci (QTLs). A quantitative trait
+   locus is a chromosomal region that harbors one or a few polymorphic gene
+   loci that influence a trait. We are going to be looking for QTLs that
+   modulate the steady state expression level of App in the adult mouse
+   forebrain.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0050.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0050.htm
new file mode 100755
index 00000000..48469040
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0050.htm
@@ -0,0 +1,919 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
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+</script>
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+<div><script language=JavaScript><!--
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+wd =   g_width;
+document.write(
+'<img src="master05_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
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+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.08 * g_width; myheight = 0.05 * g_height; mywidth = 0.18 * g_width;
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+</script>
+<div style='mso-line-spacing:"-134 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Times;font-size:117%;color:white;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.02 * g_height; mywidth = 0.18 * g_width;
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+17'><span style='font-family:Times;font-size:117%;color:white;mso-special-format:
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+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.35 * g_width; myheight = 0.05 * g_height; mywidth = 0.29 * g_width;
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+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
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+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
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+color:white;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.02 * g_height; mywidth = 0.29 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Times;font-size:117%;
+color:white;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.02 * g_height; myleft = -0.05 * g_width; myheight = 0.11 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.05 * g_width;
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+</script>
+<div style='text-align:center;mso-line-spacing:"-240 0 0";mso-margin-left-alt:
+16;mso-text-indent-alt:16'><span style='font-family:Arial;font-size:267%;
+color:#E9EB5D'>How to make recombinant inbred strains (RI)</span><span
+style='font-family:Arial;font-size:150%;color:aqua;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0.06 * g_width; myheight = 0.03 * g_height; mywidth = 0.92 * g_width;
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+</script>
+<div style='text-align:center;mso-line-spacing:"-160 0 0";mso-margin-left-alt:
+16;mso-text-indent-alt:16'><span style='font-family:Arial;font-size:150%;
+color:aqua;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.28 * g_height; myleft = 0.45 * g_width; myheight = 0.01 * g_height; mywidth = 0.18 * g_width;
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+</script>
+<div><script language=JavaScript><!--
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+ht = 0.01 * g_height;
+wd = 0.18 * g_width;
+document.write(
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+//-->
+</script></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.28 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
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+</script>
+<div><script language=JavaScript><!--
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+yy = 0.2 * g_height;
+ht = 0.11 * g_height;
+wd = 0.01 * g_width;
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+</script></div>
+</layer><script>
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+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
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+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.18 * g_width;
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+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>C57BL/6J
+(B)<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.15 * g_width;
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+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.3 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
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+</script>
+<div><script language=JavaScript><!--
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+</layer><script>
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+<div><script>
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+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>DBA/2J
+(D)<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.66 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.66 * g_width;
+yy = 0.2 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image042.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.23 * g_width; myheight = 0.01 * g_height; mywidth = 0.5 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.23 * g_width;
+yy = 0.35 * g_height;
+ht = 0.01 * g_height;
+wd = 0.5 * g_width;
+document.write(
+'<img border=0 src="slide0019_image043.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.24 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.24 * g_width;
+yy = 0.35 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image044.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.4 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.4 * g_width;
+yy = 0.35 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image045.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.57 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.57 * g_width;
+yy = 0.35 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image046.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.35 * g_height; myleft = 0.74 * g_width; myheight = 0.03 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.74 * g_width;
+yy = 0.35 * g_height;
+ht = 0.03 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image047.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.42 * g_height; myleft = 0.05 * g_width; myheight = 0.12 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.1 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:200%;color:#FFFF99'><b>F1<br>
+</b></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:200%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.39 * g_height; myleft = 0.22 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.22 * g_width;
+yy = 0.39 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image048.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.39 * g_height; myleft = 0.38 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.38 * g_width;
+yy = 0.39 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image049.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.39 * g_height; myleft = 0.55 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.55 * g_width;
+yy = 0.39 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image050.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.39 * g_height; myleft = 0.72 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.72 * g_width;
+yy = 0.39 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image051.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.43 * g_height; myleft = 0.43 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.43 * g_width;
+yy = 0.43 * g_height;
+ht = 0.03 * g_height;
+wd = 0.11 * g_width;
+document.write(
+'<img border=0 src="slide0019_image052.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.6 * g_height; myleft = 0.2 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.2 * g_width;
+yy = 0.6 * g_height;
+ht = 0.03 * g_height;
+wd = 0.09 * g_width;
+document.write(
+'<img border=0 src="slide0019_image053.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.71 * g_height; myleft = 0.58 * g_width; myheight = 0.26 * g_height; mywidth = 0.2 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.03 * g_height; myleft = 0.01 * g_width; myheight = 0.22 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.15 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:117%;
+color:#FFFF99'><b>20 generations </b></span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:117%;
+color:#FFFF99'><b>brother-sister </b></span></span></layer><script>
+	mytop = 0.12 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:117%;
+color:#FFFF99'><b>matings</b></span><span style='font-family:Arial;font-size:
+233%;color:#FFFF99;display:none'><b><br>
+</b></span></span></layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-269 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:233%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.6 * g_height; myleft = 0.5 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.5 * g_width;
+yy = 0.6 * g_height;
+ht = 0.03 * g_height;
+wd = 0.09 * g_width;
+document.write(
+'<img border=0 src="slide0019_image054.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.62 * g_height; myleft = 0.54 * g_width; myheight = 0.28 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.54 * g_width;
+yy = 0.62 * g_height;
+ht = 0.28 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image055.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.61 * g_height; myleft = 0.79 * g_width; myheight = 0.03 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.79 * g_width;
+yy = 0.61 * g_height;
+ht = 0.03 * g_height;
+wd = 0.1 * g_width;
+document.write(
+'<img border=0 src="slide0019_image056.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.62 * g_height; myleft = 0.83 * g_width; myheight = 0.28 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.83 * g_width;
+yy = 0.62 * g_height;
+ht = 0.28 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image057.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.21 * g_width; myheight = 0.09 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>BXD1</span><span
+style='font-family:Arial;font-size:150%;color:#484848;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#484848;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.51 * g_width; myheight = 0.09 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>BXD2<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.8 * g_width; myheight = 0.05 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%;mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>BXD80</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.9 * g_height; myleft = 0.64 * g_width; myheight = 0.17 * g_height; mywidth = 0.17 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.15 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-341 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:300%;color:#FFFF99'>+ � +<br>
+</span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-341 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:300%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.62 * g_height; myleft = 0.04 * g_width; myheight = 0.12 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.1 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:200%;color:#FFFF99'><b>F2<br>
+</b></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-230 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:200%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.18 * g_width; myheight = 0.01 * g_height; mywidth = 0.75 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.18 * g_width;
+yy = 0.54 * g_height;
+ht = 0.01 * g_height;
+wd = 0.75 * g_width;
+document.write(
+'<img border=0 src="slide0019_image058.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.17 * g_width; myheight = 0.03 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.17 * g_width;
+yy = 0.54 * g_height;
+ht = 0.03 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image059.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.32 * g_width; myheight = 0.03 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.32 * g_width;
+yy = 0.54 * g_height;
+ht = 0.03 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image060.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.48 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.48 * g_width;
+yy = 0.54 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image061.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.62 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.62 * g_width;
+yy = 0.54 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image062.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.77 * g_width; myheight = 0.04 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.77 * g_width;
+yy = 0.54 * g_height;
+ht = 0.04 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image063.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.92 * g_width; myheight = 0.03 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.92 * g_width;
+yy = 0.54 * g_height;
+ht = 0.03 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image064.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.44 * g_height; myleft = 0.49 * g_width; myheight = 0.1 * g_height; mywidth = 0 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.49 * g_width;
+yy = 0.44 * g_height;
+ht = 0.1 * g_height;
+wd = 0 * g_width;
+document.write(
+'<img border=0 src="slide0019_image065.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.15 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.15 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image066.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.3 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.3 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image067.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.46 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.46 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image068.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.6 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.6 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image069.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.75 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.75 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image070.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.9 * g_width; myheight = 0.11 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.9 * g_width;
+yy = 0.57 * g_height;
+ht = 0.11 * g_height;
+wd = 0.04 * g_width;
+document.write(
+'<img border=0 src="slide0019_image071.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.84 * g_height; myleft = 0.56 * g_width; myheight = 0.01 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.56 * g_width;
+yy = 0.84 * g_height;
+ht = 0.01 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image072.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.8 * g_height; myleft = 0.25 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.25 * g_width;
+yy = 0.8 * g_height;
+ht = 0.11 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image073.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.84 * g_height; myleft = 0.86 * g_width; myheight = 0.02 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.86 * g_width;
+yy = 0.84 * g_height;
+ht = 0.02 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image074.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.75 * g_height; myleft = 0.01 * g_width; myheight = 0.13 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.11 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'><b>BXD RI<br>
+</b></span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'><b>Strain set<br>
+</b></span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.01 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><b><br>
+</b></span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.12 * g_height; myleft = 0.14 * g_width; myheight = 0.06 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.14 * g_width;
+yy = 0.12 * g_height;
+ht = 0.06 * g_height;
+wd = 0.1 * g_width;
+document.write(
+'<img border=0 src="slide0019_image075.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.76 * g_width; myheight = 0.08 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.76 * g_width;
+yy = 0.1 * g_height;
+ht = 0.08 * g_height;
+wd = 0.14 * g_width;
+document.write(
+'<img border=0 src="slide0019_image076.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0.17 * g_width; myheight = 0.13 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.11 * g_height; mywidth = 0.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>fully<br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>inbred<br>
+</span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.38 * g_height; myleft = 0.02 * g_width; myheight = 0.09 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>isogenic<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.54 * g_height; myleft = 0.01 * g_width; myheight = 0.13 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.11 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>hetero-<br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>geneous<br>
+</span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.74 * g_height; myleft = 0.29 * g_width; myheight = 0.21 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.19 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.15 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>Recombined </span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>chromosomes </span></span></layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>are needed for </span></span></layer><script>
+	mytop = 0.12 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99'>mapping<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-173 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:150%;
+color:#FFFF99;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.25 * g_width; myheight = 0.09 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>female<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.64 * g_width; myheight = 0.09 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99'>male<br>
+</span></div>
+</layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.3 * g_height; myleft = 0.78 * g_width; myheight = 0.09 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:117%;color:#FFFF99'>chromosome
+pair</span><span style='font-family:Arial;font-size:150%;color:#FFFF99;
+display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-173 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Arial;font-size:150%;color:#FFFF99;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.31 * g_height; myleft = 0.65 * g_width; myheight = 0.02 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.65 * g_width;
+yy = 0.31 * g_height;
+ht = 0.02 * g_height;
+wd = 0.12 * g_width;
+document.write(
+'<img border=0 src="slide0019_image077.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.86 * g_height; myleft = 0.03 * g_width; myheight = 0.14 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.12 * g_height; mywidth = 0.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:117%;
+color:#E9EB5D'>Inbred<br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:117%;
+color:#E9EB5D'>Isogenic<br>
+</span></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:117%;
+color:#E9EB5D'>siblings</span><span style='font-family:Arial;font-size:117%;
+color:aqua;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.09 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-134 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-family:Arial;font-size:117%;
+color:aqua;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.79 * g_height; myleft = 0.83 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.83 * g_width;
+yy = 0.79 * g_height;
+ht = 0.11 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image078.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.84 * g_height; myleft = 0.83 * g_width; myheight = 0.02 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.83 * g_width;
+yy = 0.84 * g_height;
+ht = 0.02 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image079.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.79 * g_height; myleft = 0.53 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.53 * g_width;
+yy = 0.79 * g_height;
+ht = 0.11 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image080.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.83 * g_height; myleft = 0.53 * g_width; myheight = 0.01 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.53 * g_width;
+yy = 0.83 * g_height;
+ht = 0.01 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image081.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.8 * g_height; myleft = 0.23 * g_width; myheight = 0.11 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.23 * g_width;
+yy = 0.8 * g_height;
+ht = 0.11 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image082.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.18 * g_height; myleft = 0.43 * g_width; myheight = 0.09 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%;mso-line-spacing:"-341 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;mso-line-spacing:"-341 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17'><span style='font-family:Arial;font-size:300%;
+color:aqua'>B</span><span style='font-family:Arial;font-size:300%;color:#FFFF99'>X</span><span
+style='font-family:Arial;font-size:300%;color:#FF1911'>D</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.27 * g_height; myleft = 0.32 * g_width; myheight = 0.04 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.32 * g_width;
+yy = 0.27 * g_height;
+ht = 0.04 * g_height;
+wd = 0.31 * g_width;
+document.write(
+'<img border=0 src="slide0019_image083.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.66 * g_height; myleft = 0.6 * g_width; myheight = 0.03 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.6 * g_width;
+yy = 0.66 * g_height;
+ht = 0.03 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image084.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.64 * g_height; myleft = 0.15 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.15 * g_width;
+yy = 0.64 * g_height;
+ht = 0.05 * g_height;
+wd = 0.01 * g_width;
+document.write(
+'<img border=0 src="slide0019_image085.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = 0.75 * g_width; myheight = 0.05 * g_height; mywidth = 0.01 * g_width;
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+</script></div>
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+</script>
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+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The next few slides
+   provide a short introduction to mapping the loci that are responsible for
+   variation in a trait such as App expression level. These modulatory regions
+   of the genome are sometimes called quantitative trait loci or QTLs. You may
+   want to do some independent reading on this topic if this is your first
+   exposure to QTL analysis.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The genetic reference
+   population (GRP) of BXD recombinant inbred strains were originally generated
+   about 25 years ago by Benjamin Taylor at The Jackson Laboratory. He crossed
+   female C57BL/6J mice with male DBA/2J mice to generate the F1 and F2
+   progeny. At the bottom of this slide we have schematized one chromosome pair
+   from three of the BXD RI strains.<span style="mso-spacerun: yes">&nbsp;
+   </span>The dashed vertical lines that lead to the final BXD RI lines involve
+   21 full sib matings (about 7 years of breeding). Some lines die out during
+   inbreeding. For example, there is no longer any BXD3 strain.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>1. Over the last decade,
+   our group (Lu Lu and Rob Williams) and Jeremy Peirce and Lee Silver at
+   Princeton have enlarged Ben Taylor�s set. There are now just over 80 BXD
+   strains. They have all been genotyped using about 13,700 markers (SNPs and
+   microsatellites). These markers are used to define the �blue� and �red�
+   regions of the chromosomes as shown in the figure above.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. Chromosomes of RI GRPs
+   usually have about 4 times as many recombinations as those of F2 animals.
+   However, unlike an F2, both chromosomes of an RI are identical. Therefore,
+   50 RI strains contain as many recombinations as 100 F2 animals.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3. BXD43 through BXD100
+   were generated using a special method that resulted in a further doubling of
+   the average recombination density per chromosome. The entire set of 80 BXDs
+   therefore contains as many recombinations as about 260 F2 animals.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0051.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0051.htm
new file mode 100755
index 00000000..29b1f60e
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+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<div style='mso-line-spacing:"-126 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Gadget;font-size:150%;color:white'>aa<br>
+</span></div>
+</layer><script>
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+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
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+</script>
+<div style='mso-line-spacing:"-126 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Gadget;font-size:150%;color:white'>aaaa<br>
+</span></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.11 * g_width;
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+</script>
+<div style='mso-line-spacing:"-126 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:Gadget;font-size:150%;color:white;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
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+<div><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
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+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:267%;color:#E2EBF0'>D2 strain</span><span
+style='font-family:Palatino;font-size:333%;color:#FBFDB8;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.21 * g_width;
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+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-family:Palatino;font-size:333%;color:#FBFDB8;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.43 * g_height; myleft = 0.71 * g_width; myheight = 0.19 * g_height; mywidth = 0.25 * g_width;
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+</script>
+<div><script>
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+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
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+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:267%;color:#F6BF69'>B6 strain</span><span
+style='font-family:Palatino;font-size:333%;color:#F6BF69;display:none'><br>
+</span></div>
+</layer><script>
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+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
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+</script>
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+</layer><script>
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+</layer><script>
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+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.23 * g_height; mywidth = 0.27 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.13 * g_height; mywidth = 0.27 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-320 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.27 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'><i>amount of
+</i></span></span></layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.27 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'><i>transcript</i></span><span
+style='font-family:Palatino;font-size:367%;color:#E9EB5D;display:none'><br>
+</span></span></layer></div>
+</layer><script>
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+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
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+</script>
+<div><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:267%;color:white'>4 </span><span style='font-size:
+233%;color:white'>units</span><span style='font-family:Palatino;font-size:333%;
+color:#E9EB5D;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-family:Palatino;font-size:333%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.29 * g_height; myleft = 0.72 * g_width; myheight = 0.19 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.02 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:267%;color:white'>2</span><span style='font-size:
+233%;color:white'> units</span><span style='font-family:Palatino;font-size:
+333%;color:#E9EB5D;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-384 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-family:Palatino;font-size:333%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.15 * g_height; myleft = 0.31 * g_width; myheight = 0.05 * g_height; mywidth = 0.4 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.31 * g_width;
+yy = 0.15 * g_height;
+ht = 0.05 * g_height;
+wd = 0.4 * g_width;
+document.write(
+'<img border=0 src="slide0020_image094.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.17 * g_height; myleft = 0.09 * g_width; myheight = 0.16 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#E2EBF0'>D<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#E2EBF0;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.17 * g_height; myleft = 0.17 * g_width; myheight = 0.16 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#F6BF69'>B<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#F6BF69;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.79 * g_height; myleft = 0.05 * g_width; myheight = 0.13 * g_height; mywidth = 1.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.12 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%;mso-line-spacing:"-256 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17;mso-line-spacing:"-256 0 0";mso-margin-left-alt:17;
+mso-text-indent-alt:17'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E2EBF0'>D</span><span
+style='font-size:233%;color:#E9EB5D'> </span><span style='font-size:200%;
+color:#E9EB5D'>and </span><span style='font-size:233%;color:#F6BF69'>B</span><span
+style='font-size:233%;color:#E9EB5D'> </span><span style='font-size:200%;
+color:#E9EB5D'>may be SNP-like variants in the promoter </span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:200%;color:#E9EB5D'>itself (cis
+QTL) or in </span><span style='font-size:200%;color:#EAEC5E'>upstream genes
+(trans QTLs)</span><span style='font-size:300%;color:#E9EB5D'>.</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.04 * g_width; myheight = 0.16 * g_height; mywidth = 0.22 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.22 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-233 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-size:200%;color:#E9EB5D'>UPSTREAM<br>
+</span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.22 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-233 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-size:200%;color:#E9EB5D'>modulators<br>
+</span></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.01 * g_width; myheight = 0.05 * g_height; mywidth = 0.2 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center;mso-line-spacing:"-233 0 0";mso-margin-left-alt:
+17;mso-text-indent-alt:17'><span style='font-size:200%;color:#E9EB5D;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.44 * g_width; myheight = 0.17 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:300%;color:#E2EBF0'>High<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:16;mso-text-indent-alt:
+16'><span style='font-size:300%;color:#E2EBF0;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.63 * g_height; myleft = 0.08 * g_width; myheight = 0.17 * g_height; mywidth = 0.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#E2EBF0'>D<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#E2EBF0;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.63 * g_height; myleft = 0.15 * g_width; myheight = 0.17 * g_height; mywidth = 0.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.16 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#F6BF69'>B<br>
+</span></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-350 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:300%;color:#F6BF69;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.71 * g_height; myleft = 0.07 * g_width; myheight = 0.12 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.1 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:200%;color:#E9EB5D'><i>cis QTL</i></span><span
+style='font-size:200%;color:#E9EB5D;display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:200%;color:#E9EB5D;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.57 * g_height; myleft = -0.01 * g_width; myheight = 0.07 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = -0.01 * g_width;
+yy = 0.57 * g_height;
+ht = 0.07 * g_height;
+wd = 1.01 * g_width;
+document.write(
+'<img border=0 src="slide0020_image095.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.44 * g_height; myleft = 0.47 * g_width; myheight = 0.12 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-272 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:233%;color:#F6BF69'>Low<br>
+</span></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-272 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:233%;color:#F6BF69;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.58 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.04 * g_height; mywidth = 1.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
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+<div style='mso-line-spacing:"-233 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-size:200%;color:#E9EB5D'><i>trans QTL</i></span><span
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+</LAYER>
+
+<layer>
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+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>This slide is
+   illustrates two major types of QTLs that modulate variability in
+   transcript-relative steady state abundance.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>1. cis QTLs are defined
+   as QTLs that are closely linked to the gene whose transcript is the measured
+   trait. For example, a polymorphism in the promoter that affects binding of a
+   transcription factor. However, cis QTLs can be far upstream or downstream polymorphisms
+   in enhancers or may be in 3� UTR binding sites that affect message
+   stability.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. trans QTLs map far
+   enough away from the location of the gene that gives rise to the transcript
+   that is being measured so that we can be fairly certain that the QTL is not
+   in the gene itself. The most blatant type of trans QTL would be a
+   polymorphism in a transcription factor. But in the majority of cases, the
+   trans QTLs can be far removed in a mechanistic sense from the actual events
+   modulating transcript abundance. That is why there are three overlapping
+   arrows in the figure.<span style="mso-spacerun: yes">&nbsp; </span>The way
+   in which an upstream polymorphism influences a downstream difference in mRNA
+   abundance can be indirect. Effects can:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3><span
+   style="mso-spacerun: yes">&nbsp;&nbsp; </span>a.<span style="mso-spacerun:
+   yes">&nbsp; </span>cross tissue types (a polymorphic liver enzyme may affect
+   CNS gene expression)</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3><span
+   style="mso-spacerun: yes">&nbsp;&nbsp; </span>b.<span style="mso-spacerun:
+   yes">&nbsp; </span>cross time (the modulator is only expressed for one day
+   during development but has permanent effects in adults)</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3><span
+   style="mso-spacerun: yes">&nbsp;&nbsp; </span>c.<span style="mso-spacerun:
+   yes">&nbsp; </span>may be contingent on environmental factors (heat shock
+   may trigger the expression of a polymorphic factor that affects mRNA
+   abundance).</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
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+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
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new file mode 100755
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+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><span
+style='font-family:Verdana;font-size:64%'>Discovering upstream modulatory loci</span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</layer></div>
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+<div><script language=JavaScript><!--
+xx = 0.18 * g_width;
+yy = 0.2 * g_height;
+ht = 0.25 * g_height;
+wd = 0.19 * g_width;
+document.write(
+'<img border=0 src="slide0021_image100.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.32 * g_height; myleft = 0.78 * g_width; myheight = 0.25 * g_height; mywidth = 0.19 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.78 * g_width;
+yy = 0.32 * g_height;
+ht = 0.25 * g_height;
+wd = 0.19 * g_width;
+document.write(
+'<img border=0 src="slide0021_image101.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Please bring the Trait
+   Data and Analysis window to the front and look for the Interval Mapping
+   button. Confirm that you are back to the trait amyloid beta precursor
+   protein.<span style="mso-spacerun: yes">&nbsp; </span>If so, then just click
+   the button.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notice that the default
+   for:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Select Chrs (chromosomes)
+   is ALL</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Select Mapping Scale is
+   set to GENETIC</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Options: Permutation test
+   YES<span style="mso-spacerun: yes">&nbsp; </span>(2000 is the default
+   number)</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Options: Bootstrap test
+   YES (2000 is the default number)</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0053.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0053.htm
new file mode 100755
index 00000000..d729b467
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0053.htm
@@ -0,0 +1,155 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Jul-18-05: WebQTL searches for upstream controllers">
+<style media=print>
+<!--.sld
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+ LoadNavSld("slide0053.htm");
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+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.08 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'><i>WebQTL
+searches for upstream controllers</i></span><span style='font-family:Verdana;
+font-size:73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.71 * g_height; myleft = 0.34 * g_width; myheight = 0.19 * g_height; mywidth = 0.45 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.18 * g_height; mywidth = 0.44 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.44 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D'><i>App maps
+on Chr 16 (blue </i></span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.44 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D'><i>arrow
+points to the orange </i></span></span></layer><script>
+	mytop = 0.09 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.38 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D'><i>triangle)
+but the best </i></span></span></layer><script>
+	mytop = 0.13 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.38 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D'><i>locus is
+on Chr 7.</i></span><span style='font-size:233%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.01 * g_width; myheight = 0.53 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.08 * g_height;
+ht = 0.53 * g_height;
+wd = 0.98 * g_width;
+document.write(
+'<img border=0 src="slide0022_image102.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.46 * g_height; myleft = 0.15 * g_width; myheight = 0.53 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.15 * g_width;
+yy = 0.46 * g_height;
+ht = 0.53 * g_height;
+wd = 0.15 * g_width;
+document.write(
+'<img border=0 src="slide0022_image103.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.46 * g_height; myleft = 0.8 * g_width; myheight = 0.53 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.8 * g_width;
+yy = 0.46 * g_height;
+ht = 0.53 * g_height;
+wd = 0.1 * g_width;
+document.write(
+'<img border=0 src="slide0022_image104.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.41 * g_height; myleft = 0.76 * g_width; myheight = 0.22 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.76 * g_width;
+yy = 0.41 * g_height;
+ht = 0.22 * g_height;
+wd = 0.11 * g_width;
+document.write(
+'<img border=0 src="slide0022_image105.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.41 * g_height; myleft = 0.29 * g_width; myheight = 0.24 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.29 * g_width;
+yy = 0.41 * g_height;
+ht = 0.24 * g_height;
+wd = 0.12 * g_width;
+document.write(
+'<img border=0 src="slide0022_image106.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>This is a major output
+   type: a so-called full-genome interval map.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The X-axis represents all
+   19 autosomes and the X chromosome as if they were laid end to end with short
+   gaps between the telomere of one chromosome and the centromere of the next
+   chromosome (mouse chromosomes only have a single long arm and the centromere
+   represents the origin of each chromosome for numerical purpose: 0
+   centimorgans at almost 0 megabases). The blue labels along the bottom of the
+   figure list a subset of the 3795 markers that were used in mapping.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The thick blue wavy line
+   running across chromosomes summarizes the strength of association between
+   variation in the phenotype (App expression differences) and the two
+   genotypes of all markers and the intervals between markers (hence, interval
+   mapping).<span style="mso-spacerun: yes">&nbsp; </span>The height of the
+   wave (blue Y-axis to the left) provides the likelihood ratio statistic
+   (LRS). Divide by 4.61 to convert these values to LOD scores.<span
+   style="mso-spacerun: yes">&nbsp; </span>Or you can read them as a
+   chi-square-like statistic.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The red line and the red
+   axis to the far right provides an estimate of the effect that a QTL has on
+   expression of App (this estimate of the so-called additive effect tends to
+   be too high). If the red line is below the X-axis then this means that the
+   allele inherited from C57BL/6J (B6 or B) at a particular marker is
+   associated with higher values. If the red line is above the X-axis then the
+   DBA/2J allele (D2 or D) is associated with higher trait values. Multiply the
+   additive effect size by 2 to estimate the difference between the set of
+   strains that have the B/B genotype and those that have the D/D genotype at a
+   specific marker. For example, on distal Chr 7 the red line peaks at a value
+   of about 0.2. That means that this region of chromosome 2 is responsible for
+   a 0.4 unit expression difference between B/B strains and the D/D strains.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The yellow histogram
+   bars: These summarize the results of a whole-genome bootstrap of the trait
+   that is performed 1000 times. What is a bootstrap? A bootstrap provides a
+   method to evaluate whether results are robust. If we drop out one strain, do
+   we still get the same results? When mapping quantitative traits, each strain
+   normally gets one equally weighted vote. But using the bootstrap procedure,
+   we give each strain a random weighting factor of between 0 and 1.<span
+   style="mso-spacerun: yes">&nbsp; </span>We then remap the trait and find THE
+   SINGLE BEST LRS VALUE per bootstrap. We do this 1000 times. In this example,
+   most bootstrap results cluster on Chr 3 and Chr 7 under the LRS peaks. That
+   is somewhat reassuring. But notice that a substantial number of bootstrap
+   are scattered around on other chromosomes. About 30% of the bootstrap
+   resamples have a peak on Chr 7. That is pretty good, but does makes us
+   realize that the sample we are working with is still quite small and
+   fragile.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The horizontal dashed
+   lines at 10.5 and 17.3 are the likelihood ratio statistic (LRS) values
+   associated with the suggestive and significant genome-wide probabilities
+   that were established by permutations of phenotypes across genotypes. We
+   shuffle randomly 2000 times and obtain a distribution of peak LRS scores to
+   generate a null distribution. Five percent of the time, one of these
+   permuted data sets will have a peak LRS higher than 17.3. We call that level
+   the 0.05 significance threshold for a whole genome scan. The p = 0.67 point
+   is the the suggestive level, and corresponds to the green dashed line.<span
+   style="mso-spacerun: yes">&nbsp; </span>These thresholds are conservative
+   for transcripts that have expression variation that is highly heritable. The
+   putative or suggestive QTL on Chr 3 is probably more than just suggestive.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>One other point: the
+   mapping procedure we use is computationally very fast, but it is relatively
+   simple. We are not looking for gene-gene interactions and we are not fitting
+   multiple QTLs in combinations. Consider this QTL analysis a first pass that
+   will highlight hot spots and warm spots that are worth following up on using
+   more sophisticated models.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>CLICKABLE REGIONS:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>1. If you click on the
+   Chromosome number then you will generate a new map just for that chromosome.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. If you click on the
+   body of the map, say on the blue line, then you will generate a view on a 10
+   Mb window of that part of the genome from the UCSC Genome Browser web site.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3. If you click on a
+   marker symbol, then you will generate a new Trait data and Analysis window
+   with the genotypes loaded into the window just like any other trait. More on
+   this in Section 3.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>4. You can drag these
+   maps off of the browser window and onto your desktop. They will be saved as
+   PNG or PDF files. You can import them into Photoshop or other programs.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>5. There is also an
+   option at the bottom of the page to download a 2X higher resolution image of
+   this plot for papers and presentations.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>6. You can also download
+   the results of the analysis in a text format</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0054.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0054.htm
new file mode 100755
index 00000000..64dbe68f
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0054.htm
@@ -0,0 +1,113 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Jul-18-05: Genetic versus Physical maps for App expression">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
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+	document.SlideLayer.height = window.innerHeight;
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+ parent.base.highlite(); 
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+function DoOnLoad() { 
+ LoadNavSld("slide0054.htm");
+}//-->
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+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'><i>Genetic
+versus Physical maps for App expression</i></span><span style='font-family:
+Verdana;font-size:73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
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+ht = 0.39 * g_height;
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+'<img border=0 src="slide0023_image107.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
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+ht = 0.54 * g_height;
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+'<img border=0 src="slide0023_image108.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.91 * g_height; myleft = 0.05 * g_width; myheight = 0.07 * g_height; mywidth = 0.95 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.03 * g_height; mywidth = 0.95 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:117%;color:#E9EB5D'><i>The
+difference between genetic and physical scale is analogous to measuring the </i></span></span></layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:117%;color:#E9EB5D'><i>separation
+between New York and Boston in either travel hours or kilometers</i></span><span
+style='font-size:150%;color:#E9EB5D'><i>.</i></span><span style='font-size:
+167%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The map on the top has an
+   X-axis scale based on frequency of recombinations events between markers (B
+   to D transitions, see slide 19 for a color-coded example). These so-called
+   genetic maps are scaled in centimorgan (recombinations per 100 gametes). In
+   contrast, the physical map shown below the genetic map has an X-axis scale
+   based on DNA length measured in nucleotides or base-pairs. Notice the large
+   difference between the two maps in the size of Chr 19 (large on the genetic
+   scale but small on the physical scale).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Also notice the large
+   difference in the width of the chromosome 7 QTL peak. In mice,
+   recombinations occur with higher frequency toward the telomeric side (righ
+   sidet) of each chromosome. As a result, genetic maps are stretched out more
+   toward the telomere relative to a physical map. The QTL on distal Chr 7 is
+   therefore actually more precisely mapped than might appear looking at the
+   genetic map.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>The physical scale is
+   becoming more useful than the genetic scale primarily because many other
+   data types can be easily superimposed on a physical map. You will see more
+   examples in the next several slides.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0055.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0055.htm
new file mode 100755
index 00000000..cae5b4b9
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@@ -0,0 +1,110 @@
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+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Jul-18-05: Physical map for distal chromosome 7">
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+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
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+ LoadNavSld("slide0055.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.08 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Physical
+map for distal chromosome 7</span><span style='font-family:Verdana;font-size:
+73%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.05 * g_width; myheight = 0.06 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.04 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><span style='font-size:167%;color:#E9EB5D'>Distal Chr 7 from
+~120 and 132 Mb may modulate</span><span style='font-size:167%;color:#E9EB5D'><i>
+App</i></span><span style='font-size:200%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.93 * g_height; myleft = 0.06 * g_width; myheight = 0.03 * g_height; mywidth = 0.75 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.06 * g_width;
+yy = 0.93 * g_height;
+ht = 0.03 * g_height;
+wd = 0.75 * g_width;
+document.write(
+'<img border=0 src="slide0024_image109.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.15 * g_height; myleft = 0.06 * g_width; myheight = 0.75 * g_height; mywidth = 0.68 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.06 * g_width;
+yy = 0.15 * g_height;
+ht = 0.75 * g_height;
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+'<img border=0 src="slide0024_image111.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Physical map of variation
+   in App expression in brain on distal Chr 7 (a blow up of the whole-genome
+   map on the previous slide).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Verdana size=3> You can now see that the X-axis is on a physical scale
+   of megabases (Mb). The QTL peak is roughly between 120 and 132 Mb.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. The small irregular
+   colored blocks and marks toward the top of the map mark the locations of
+   genes superimposed on the physical map. Neighboring genes are offset
+   slightly in the vertical axis for display purpose. Note one region of very
+   high gene density from about 120 to 123 Mb.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3. The orange hash marks
+   along the X-axis represent the number of single nucleotide polymorphisms
+   that distinguish the two parental strains (C57BL/6J and DBA/2J) from each
+   other. We call this the SNP seismograph track (see Glossary for more
+   details). Regions with low numbers of SNP have closely matched sequences and
+   are less likely to contain QTLs.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>4. As before, the thin
+   red line shows the additive effect size. By convention the positive values
+   signify the D alleles are associated with higher expression of App in this
+   region of Chr 7 than the B alleles. The maximum effect size is about +0.20
+   log2 expression units per D allele. The differences been the BB and DD
+   genotypes (BB and DD because each strain has two alleles; one per
+   chromosome) is therefore about 2^0.4 = 1.32; or a 32% increment in DD
+   relative to BB at this locus.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>5. If you scroll just
+   under the Physical Map you will see text that reads �DISPLAY from XXX Mb TO
+   YYY Mb�..�<span style="mso-spacerun: yes">&nbsp; </span>These physical maps
+   are zoomable, a feature we will exploit to evaluate candidate genes in this
+   QTL interval.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0056.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0056.htm
new file mode 100755
index 00000000..eba3fc05
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0056.htm
@@ -0,0 +1,134 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Jul-18-05: Evaluating candidate genes">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
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+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
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+	document.SlideLayer.height = window.innerHeight;
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+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
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+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0056.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
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+	g_height = g_width * g_origHeight / g_origWidth;
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+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
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+</script></div>
+</layer><script>
+	mytop = 0.34 * g_height; myleft = 0.01 * g_width; myheight = 0.61 * g_height; mywidth = 0.97 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.34 * g_height;
+ht = 0.61 * g_height;
+wd = 0.97 * g_width;
+document.write(
+'<img border=0 src="slide0025_image112.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = -0.01 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.93 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.06 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><span
+style='font-family:Verdana;font-size:64%'>Evaluating candidate genes</span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.01 * g_width; myheight = 0.22 * g_height; mywidth = 0.34 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.08 * g_height;
+ht = 0.22 * g_height;
+wd = 0.34 * g_width;
+document.write(
+'<img border=0 src="slide0025_image113.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.03 * g_height; myleft = 0.69 * g_width; myheight = 0.17 * g_height; mywidth = 0.33 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.16 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center'><span style='font-size:200%;color:#E9EB5D'><i>Right
+position<br>
+</i></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-size:200%;color:#E9EB5D'><i>and
+high </i></span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.31 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:center'><span style='font-size:200%;color:#E9EB5D'><i>correlation</i></span></span></layer></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.17 * g_height; myleft = 0.75 * g_width; myheight = 0.14 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.12 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center'><span style='font-size:267%;color:#E9EB5D'><i><span
+style="mso-spacerun: yes">&nbsp;</span></i></span><span style='font-size:200%;
+color:#E9EB5D'><i>= better<br>
+</i></span></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:center'><span style='font-size:200%;color:#E9EB5D'><i>candidates</i></span></div>
+</layer></div>
+</layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4><b>Evaluating
+   candidate genes (CHECKED BOXES) responsible for variability in APP
+   expression:</b></font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>A large number
+   of genes are usually in the QTL interval and are therefore POSITIONAL
+   CANDIDATES, but they will differ greatly in their biological and
+   bioinformatic plausibility. Assume that the QTL has been located between 119
+   and 131 Mb (12 Mb). There will typically be 12 to 15 genes per Mb, so we
+   might need to evaluate several hundred positional candidates. In this
+   particular case there are about 100 known genes in this interval. Eight of
+   these are highlighted in the table above with check marks in the boxes to
+   the left.<span style="mso-spacerun: yes">&nbsp; </span>We need to highlight
+   and objectively score the biologically relevant subset of all 100 positional
+   candidate genes. We could look through gene ontologies and expression levels
+   to help us shorten the list. An alternate way available using WebQTL is to
+   generate a list of those genes in this interval that have transcripts that
+   co-vary in expression with App expression. That is what the table shows.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>1. To replicate
+   this table go back to the Trait Data and Analysis Form. Choose to sort
+   correlations by POSITION and select RETURN = 500. Then scroll down the list
+   to Chr 7 and review the subset of positional candidates that share
+   expression with App. You should see a list similar to that shown above.
+   Gtf3c1 is a good biological candidate and has a high covariation in
+   expression with App.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>2. Caveat:<span
+   style="mso-spacerun: yes">&nbsp;&nbsp; </span>Of course, the gene or genes
+   that control App expression may not be in this list. A protein coding
+   difference might be the ultimate cause of variation in App transcript level
+   and the expression covariation might be close to zero. Our list may also
+   simply be missing the right transcript since the microarray is not truly
+   comprehensive. Furthermore, even if the list contains the QT gene, an
+   expression difference may only have been expressed early in development or
+   even in another tissue such as liver. While it is important to recognize
+   these caveats, it is equally important to devise a rational way to rank
+   candidates given existing data. Coexpression is one of several criteria used
+   to evaluate positional candidates. We will see others in the next slide.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>3. We can also
+   assess the likelihood that candidates contain functional polymorphism in
+   promoters and enhancers that affect their expression simply by mapping the
+   transcripts of all candidate genes to see if they �map back� to the location
+   of gene itself. A transcript that maps to its own location is referred to as
+   a cis QTL. We essentially ask: Which of the the transcripts listed in the
+   Correlation Table above (from Gtf3c1 to Zranb1) has variation in expression
+   that maps to Chr 7 at about 120 Mb?<span style="mso-spacerun: yes">&nbsp;
+   </span>The logic of this search is that if a gene controls the level of its
+   own expression it is also much more likely to generate other downstream
+   effects. The Gtf3c1 transcript is a weak cis QTL with a local LRS maximum of
+   about 7.0 (D alleles are high). That is just about sufficient to declare it
+   to be a cis QTL. [No whole genome correction is required and a point-wise
+   p-value of 0.05 is the appropriate test. A p-value of 0.05 is roughly
+   equivalent to an LRS of 6.0 (LOD = 1.3).]</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0057.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0057.htm
new file mode 100755
index 00000000..dcc5ede7
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+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0057.htm
@@ -0,0 +1,115 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
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+}
+</script>
+<meta name=Description content="Jul-18-05: Physical maps are zoomable">
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+<div><script language=JavaScript><!--
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+wd =   g_width;
+document.write(
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+//-->
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+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.08 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Physical
+maps are zoomable</span><span style='font-family:Verdana;font-size:73%;
+mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.03 * g_width; myheight = 0.41 * g_height; mywidth = 0.89 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
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+'<img border=0 src="slide0026_image114.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.44 * g_height; myleft = 0.07 * g_width; myheight = 0.48 * g_height; mywidth = 0.42 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.07 * g_width;
+yy = 0.44 * g_height;
+ht = 0.48 * g_height;
+wd = 0.42 * g_width;
+document.write(
+'<img border=0 src="slide0026_image115.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
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+</script>
+<div><script language=JavaScript><!--
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+yy = 0.94 * g_height;
+ht = 0.03 * g_height;
+wd = 0.97 * g_width;
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+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Even higher blow-up of
+   part of the Chr 7 physical map of variation in App expression in brain.<span
+   style="mso-spacerun: yes">&nbsp; </span>The QTL region actually extends from
+   about 119 to 129.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>1. As mentioned
+   in the previous slide another important approach to ranking candidates is
+   based on the number of sequence variants that distinguish the parental
+   strains. If we were sure that the sequences of the gene, its promoter, and
+   its enhancers were identical between the strains then we could discount--but
+   not eliminate--that gene as a candidate. The Gtf3c1 candidate almost falls
+   into this category: of 663 known SNPs in and around this gene, only four
+   differ between C57BL/6J and DBA/2J. Gtf3c1 is essentially
+   identical-by-descent in these strains and is a less likely candidate. In
+   contrast, if the two alleles of the gene have dozens of functional variants
+   in exons, promoters, enhancers, and splice sites, then it becomes a higher
+   priority candidate.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face="Times New Roman" size=4>Of course it
+   only takes a single critical sequence variant to generate downstream
+   effects. The argument above is really about the prior probabilities. Where
+   would you place your bets given the information at hand?</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2.<span
+   style="mso-spacerun: yes">&nbsp; </span>If you scroll down the INTERVAL
+   ANALYST you will find that Ctbp2 is a particularly interesting candidate
+   that contains lots of SNPs (n = 75 and a SNP density of 0.55 SNP/Kb). Ctbp2
+   is also closer to our QTL peak than was Gtf3c1. Not only does Ctbp2 contain
+   lots of SNPs but it is also is associated with a powerful cis QTL with an
+   LRS of 24.2 (divide by 4.61 to get the equivalent LOD score of 5.25).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3.<span
+   style="mso-spacerun: yes">&nbsp; </span>At this high magnification,
+   individual genes are distinct. They are color coded by their density of
+   SNPs. Bright orange represents those genes that have a high SNP density
+   (C57BL/6J versus DBA/2J), black represents genes with low SNP density. Roll
+   the cursor over a gene block and its name will pop up, along with
+   information on exon number.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>4.<span
+   style="mso-spacerun: yes">&nbsp; </span>Beneath the physical map you will
+   find an INTERVAL ANALYST table that lists information on known genes in the
+   region on which you have zoomed the Physical Map.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>5.<span
+   style="mso-spacerun: yes">&nbsp; </span>As always: error-checking is
+   important. Some genes may be missing from the Interval Analyst (recent
+   additions or errors of omission). In this case the Zranb1 gene that is
+   located just proximal to Ctbp2 is not listed in the INTERVAL ANALYST.
+   Double-check the interval using the Genome Browser links (blue and beige
+   horizontal bars) at the top of the PHYSICAL MAP.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0058.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0058.htm
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0058.htm
@@ -0,0 +1,167 @@
+<html>
+<head>
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+<div><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
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+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Evaluating
+</span><span style='font-family:Verdana;font-size:64%'><i>Ctbp2</i></span><span
+style='font-family:Verdana;font-size:64%'> as a candidate QTL for </span><span
+style='font-family:Verdana;font-size:64%'><i>App</i></span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
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+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>This is</span><span
+style='font-size:233%;color:#E9EB5D'><i> the </i></span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2 </i></span><span
+style='font-size:233%;color:#E9EB5D'>cis QTL, </span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>but is
+detected </span></span></layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>only in the </span></span></layer><script>
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+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>Rosen
+striatum </span></span></layer><script>
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+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>data set.</span><span
+style='font-size:233%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer><script>
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+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
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+mso-text-raise:0%'><script>
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+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>This is</span><span
+style='font-size:233%;color:#E9EB5D'><i> the App QTL </i></span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>in the INIA
+data set. </span><span style='font-size:233%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer><script>
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+</script>
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+//-->
+</script></div>
+</layer><script>
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+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>This slide illustrates
+   one reason why Ctbp2 should be considered a high priority positional
+   candidate gene that may modulate the expression level of App.<span
+   style="mso-spacerun: yes">&nbsp; </span>Ctbp2 is a strong cis QTL in some
+   brain regions (here the data are taken from the striatum).<span
+   style="mso-spacerun: yes">&nbsp; </span>If Ctbp2 contains variants that
+   modulate its own expression then these expression differencess may produce
+   many downstream effects. Of course, we now want to know much more about the
+   known biology of Ctbp2. What kind of gene is it? To begin to answer that
+   question we can use a number of resources listed in the LINKS page.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Verdana size=3> The App QTL is bimodal. Perhaps there are actually two
+   causal factors in this region--one close to 123 Mb and the other close to
+   127 Mb.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. The precision of QTL
+   mapping depends on several factors, including the effect size and
+   interactions among QTLs modulating a trait, the number of genetic
+   individuals that are studied, and the distribution of recombinations in the
+   study population.<span style="mso-spacerun: yes">&nbsp; </span>In the case
+   above, the QTL(s) are likely to be confined to the interval from 120 to 132
+   Mb. The bootstrap test (yellow bars shown in some of the previous slides)
+   can be usual for estimating the consiistency of QTL peaks.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
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+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0059.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0059.htm
new file mode 100755
index 00000000..5ba9ff5c
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0059.htm
@@ -0,0 +1,104 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Jul-18-05: Evaluating Ctbp2 using other resources">
+<style media=print>
+<!--.sld
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+	height:4.5in !important;
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+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
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+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Evaluating
+</span><span style='font-family:Verdana;font-size:64%'><i>Ctbp2</i></span><span
+style='font-family:Verdana;font-size:64%'> using other resources</span><span
+style='font-family:Verdana;font-size:73%;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
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+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
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+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Ctbp2 should also be
+   considered a high priority biological candidate gene responsible for
+   modulating App expression levels. The<span style="mso-spacerun: yes">&nbsp;
+   </span>C-terminal binding protein 2 is a transcriptional co-repressor also
+   known as Ribeye.</font><font face=Times-Roman size=3> The gene produces two
+   transcripts encoding distinct proteins. The short form is a transcriptional
+   repressor that binds a Pro-X-Asp-Leu-Ser peptide motif common to adenoviral
+   oncoprotein E1a and a related motif in BKLF. This short form also interacts<span
+   style="mso-spacerun: yes">&nbsp; </span>with several transcription factors
+   including EVI1, ZFPM1, and<span style="mso-spacerun: yes">&nbsp;&nbsp;
+   </span>ZFHX1A (aka TCF8, deltaEF1). The longer isoform is a major component
+   of specialized synapses in photoreceptors. Both proteins contain a NAD+
+   binding domain similar to NAD+-dependent 2-hydroxyacid dehydrogenases.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>1. To find out more about
+   CTBP2 protein and the Ctbp2 gene, link to iHOP at
+   http://www.pdg.cnb.uam.es/UniPub/iHOP/ and type in CTBP2</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>Try Arrowsmith at
+   http://arrowsmith.psych.uic.edu/cgi-test/arrowsmith_uic/pubsmith.cgi</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>2. Both APP and CTBP2 are
+   involved in oxidoreducatase activity or Notch signalling. To estabilish this
+   common gene ontology visit NCBI<span style="mso-spacerun: yes">&nbsp;
+   </span>http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene<span
+   style="mso-spacerun: yes">&nbsp; </span>and enter each gene symbol.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>3. You can get intersting
+   hints regarding Ctbp2 expression partners by examining the genetic
+   correlations between Ctbp2 probe set 1422887_a_at and all other transcripts
+   on the M430 Affymetrix array. Use the Striatum data set because we already
+   know from previous work (the previous slide) that this gene is a cis
+   QTL.<span style="mso-spacerun: yes">&nbsp; </span>You should be able to show
+   that Ctbp2 and Notch3 have antagonistic expression patterns in striatum. The
+   negative genetic correlation with E2f4 is even stronger. The transcript also
+   has a high positive genetic correlation with Rdh14. Of particualr interest
+   with respect to APP protein processing, Ctbp2 covaries positiviely with
+   Bace2 (the transcript of the beta site APP-cleaving enzyme 2).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0060.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0060.htm
new file mode 100755
index 00000000..2f1c5b7b
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0060.htm
@@ -0,0 +1,139 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jul-18-05>
+<style media=print>
+<!--.sld
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+<script language=JavaScript>
+function font_size() {
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+		min = window.innerHeight/20;
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+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
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+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
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+document.captureEvents(Event.KEYPRESS);
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+document.onmousedown = _KPH ;
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+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0060.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
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+	if ( size < 1 ) size = 1;
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+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Summary of Part 2:</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.87 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.84 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.96%;font-family:Arial'>1.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Covered the basics of QTL
+analysis and mapping.<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.95 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.71%;font-family:Arial'>2.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Reviewed difference between
+genetic and physical maps.<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.15 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.95 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.62%;font-family:Arial'>3.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Discussed interpreting features
+of QTL maps including the </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>LRS function, the additive effect function,
+the bootstrap bars, </span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.84 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>and the permutation thresholds.<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.26 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.51%;font-family:Arial'>4.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Illustrated technics to
+generate a list of positional candidates.<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.31 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.97 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.65%;font-family:Arial'>5.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>Discussed some factors used to
+evaluate candidate genes.</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.58 * g_height; myleft = 0.05 * g_width; myheight = 0.26 * g_height; mywidth = 1.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.06 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>What does a QTL signify? A good QTL is a claim
+that a particular </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>chromosomal region contains a causal source of
+variation in the </span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>phenotype. The importance of this hypothesis
+depends on the </span></span></layer><script>
+	mytop = 0.15 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>quality and relevance of the phenotype and the
+statistical </span></span></layer><script>
+	mytop = 0.21 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.89 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>strength of the QTL. As usual, test and be
+skeptical.</span></span></layer></div>
+</layer></div>
+</LAYER>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0061.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0061.htm
new file mode 100755
index 00000000..a2816092
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0061.htm
@@ -0,0 +1,112 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Jul-18-05: Test Questions">
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
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+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0061.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
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+
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+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.08 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0;mso-line-spacing:"-358 0 -1";mso-margin-left-alt:233;
+mso-text-indent-alt:0'><span style='font-family:Verdana;font-size:64%'>Test
+Questions</span><span style='font-family:Verdana;font-size:73%;mso-special-format:
+lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.11 * g_height; myleft = 0.04 * g_width; myheight = 0.06 * g_height; mywidth = 1.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><span style='font-size:233%;color:#E9EB5D'>1. Evaluate
+candidates for the Chr 3 </span><span style='font-size:233%;color:#E9EB5D'><i>App</i></span><span
+style='font-size:233%;color:#E9EB5D'> QTL.</span><span style='font-size:233%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer><script>
+	mytop = 0.24 * g_height; myleft = 0.04 * g_width; myheight = 0.12 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>2. Do </span><span
+style='font-size:233%;color:#E9EB5D'><i>App</i></span><span style='font-size:
+233%;color:#E9EB5D'> and </span><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2</i></span><span
+style='font-size:233%;color:#E9EB5D'> expression share any </span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>other QTLs
+beside that on Chr 7?</span><span style='font-size:233%;color:#E9EB5D;
+mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer><script>
+	mytop = 0.45 * g_height; myleft = 0.04 * g_width; myheight = 0.12 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.02 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>3. Can you
+exploit literature mining tools to </span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>find strong
+relation between </span><span style='font-size:233%;color:#E9EB5D'><i>App</i></span><span
+style='font-size:233%;color:#E9EB5D'> and </span><span style='font-size:233%;
+color:#E9EB5D'><i>Ctbp2</i></span><span style='font-size:233%;color:#E9EB5D'>? </span><span
+style='font-size:233%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer><script>
+	mytop = 0.66 * g_height; myleft = 0.04 * g_width; myheight = 0.12 * g_height; mywidth = 1.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 1.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>4. Why might
+the cis QTL for </span><span style='font-size:233%;color:#E9EB5D'><i>Ctbp2</i></span><span
+style='font-size:233%;color:#E9EB5D'> expression </span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:233%;color:#E9EB5D'>only be
+detected in the striatum data set?</span><span style='font-size:233%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></span></layer></div>
+</layer></div>
+</LAYER>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0062.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0062.htm
new file mode 100755
index 00000000..6b671799
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0062.htm
@@ -0,0 +1,109 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Jul-18-05: Contact for comments and improvements:">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0062.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
+g_origHeight = 566;
+g_origWidth = 755;
+g_width = window.innerWidth - 10;
+g_height = window.innerHeight - 10;
+
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+g_left = 0;
+
+if ( g_width < ( g_origWidth * g_height /g_origHeight ) )
+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.02 * g_height; myleft = 0.02 * g_width; myheight = 0.09 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.01 * g_height; myleft = 0.01 * g_width; myheight = 0.06 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><span
+style='font-size:73%'><i>Contact for comments and improvements:</i></span><span
+style='font-size:82%;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0.06 * g_width; myheight = 0.24 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.24 * g_height; mywidth = 0.87 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.87 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:82%'>rwilliam@nb.utmem.edu<br>
+</span></span></layer><script>
+	mytop = 0.08 * g_height; myleft = 0.04 * g_width; myheight = 0.07 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:82%'><br>
+</span></span></layer><script>
+	mytop = 0.16 * g_height; myleft = 0.04 * g_width; myheight = 0.07 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:82%;mso-special-format:lastCR;
+display:none'><br>
+</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.27 * g_height; myleft = 0.09 * g_width; myheight = 0.07 * g_height; mywidth = 0.5 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><span style='font-family:"Gill Sans";font-size:300%;
+color:#E9EB5D'>kmanly@utmem.edu</span></div>
+</layer><script>
+	mytop = 0.83 * g_height; myleft = 0.04 * g_width; myheight = 0.1 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>The </span><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'><i>App</i></span><span style='font-family:"Gill Sans";
+font-size:200%;color:#E9EB5D'> findings reviewed in this presentation are part
+of an </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>ongoing study of R. Wiliams and R. Homayouni (July 15, 2005)</span><span
+style='font-family:"Gill Sans";font-size:300%;color:#E9EB5D;mso-special-format:
+lastCR;display:none'><br>
+</span></span></layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>END</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0063.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0063.htm
new file mode 100755
index 00000000..0c358615
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0063.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Jul-18-05: GeneNetwork and WebQTL:">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
+  	}
+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0063.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0001.gif border=0 usemap="#Slide0001.gif_map"></center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0064.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0064.htm
new file mode 100755
index 00000000..49a071a3
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0064.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
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+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
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+}
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+<style media=print>
+<!--.sld
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+	parent.base.highlite();
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--- /dev/null
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+<html>
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+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
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+<script>
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+}
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+function flatLoad() {
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+	parent.base.highlite();
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+</head>
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+<html>
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+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
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+}
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+<style media=print>
+<!--.sld
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+	parent.base.highlite();
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+ } 	
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+function DoOnLoad() { 
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+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
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+<style media=print>
+<!--.sld
+	{left:0px !important;
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
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+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
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+  		document.onmousedown = _KPH;
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+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
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+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
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+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+  		self.focus();
+  	parent.base.SldUpdated( "slide0068.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
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+</body>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0069.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0069.htm
new file mode 100755
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--- /dev/null
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jul-18-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+	height:4.5in !important;
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
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+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
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+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+  		self.focus();
+  	parent.base.SldUpdated( "slide0069.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
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+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0070.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0070.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0070.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
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+<meta name=Description content=Jul-18-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+	height:4.5in !important;
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0070.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0008.gif border=0 usemap="#Slide0008.gif_map"></center>
+</body>
+</html>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0071.htm b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0071.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0071.htm
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jul-18-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
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+<script language=JavaScript>
+function flatLoad() {
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+	parent.base.highlite();
+DoOnLoad();
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+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+  	parent.base.SldUpdated( "slide0071.htm" );
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+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
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new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0072.htm
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+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
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+<script>
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+}
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+<style media=print>
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+function restore() {
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+		self.location.reload();
+}
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+<script language=JavaScript>
+function flatLoad() {
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+	parent.base.highlite();
+DoOnLoad();
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+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
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new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0073.htm
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+<html>
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+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
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+<script>
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+}
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
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+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+function restore() {
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+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0093.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0031.gif border=0 usemap="#Slide0031.gif_map"></center>
+</body>
+</html>
+\ No newline at end of file
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new file mode 100755
index 00000000..e6cd7808
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diff --git a/web/tutorial/ppt/html/webqtl_demo2.ppt_files/webqtl_demo2.ppt.ppt b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/webqtl_demo2.ppt.ppt
new file mode 100755
index 00000000..2970803a
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2.ppt_files/webqtl_demo2.ppt.ppt
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt.htm
new file mode 100755
index 00000000..7ac6b72f
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt.htm
@@ -0,0 +1,4 @@
+<html>
+<head>
+<meta name=Title
+content="PowerPoint Presentation  -  Complex trait analysis, develop-ment, and genomics">
+<meta name=Keywords content=OPA>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link rel=Edit-Time-Data href="webqtl_demo2_part1.ppt_files/editdata.mso">
+<link rel=OLE-Object-Data href="webqtl_demo2_part1.ppt_files/oledata.mso">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt_files/webqtl_demo2_part1.ppt.ppt">
+<meta http-equiv=expires content=0>
+<script language=JavaScript src="webqtl_demo2_part1.ppt_files/script.js"></script><script language=JavaScript><!--
+LoadHTMLVersion();
+ if (g_ShowFSDefault ) FullScreen();//-->
+</script>
+</head>
+<frameset rows="*,35" framespacing=1 frameborder=1>
+ <noframes>
+  <body>
+  <p>This page uses frames, but your browser doesn't support them.</p>
+  </body>
+ </noframes>
+ <frame src="webqtl_demo2_part1.ppt_files/frame.htm" name=MainFrame
+ marginheight=0 marginwidth=0>
+ <frameset cols="20%,*">
+  <frame src="webqtl_demo2_part1.ppt_files/outline_navigation_bar.htm"
+  name=PPTOtlNav marginheight=0 marginwidth=0 scrolling=no noresize>
+  <frame src="webqtl_demo2_part1.ppt_files/navigation_bar.htm" name=PPTNav
+  marginheight=0 marginwidth=0 scrolling=no noresize>
+ </frameset>
+</frameset>
+</html>
+\ No newline at end of file
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0013.gif
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0014.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0014.gif
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0014.gif
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0015.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0015.gif
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0016.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0016.gif
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0017.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0017.gif
new file mode 100755
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0017.gif
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0018.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0018.gif
new file mode 100755
index 00000000..014d8569
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0018.gif
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0019.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0019.gif
new file mode 100755
index 00000000..782076fa
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/Slide0019.gif
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/blank_notes.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/blank_notes.htm
new file mode 100755
index 00000000..e833eefd
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/blank_notes.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black topmargin=0 leftmargin=0>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/endshow.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/endshow.htm
new file mode 100755
index 00000000..a2ed520a
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/endshow.htm
@@ -0,0 +1 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+</head>
+<body bgcolor=black>
+<center>
+<p><font face=Arial color=white size=2><br>
+<b>Open the default .htm file to view this Web presentation.</b></font></p>
+</center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/error.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/error.htm
new file mode 100755
index 00000000..f2002169
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/error.htm
@@ -0,0 +1 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+</head>
+<body bgcolor=black>
+<center>
+<p><font face=Arial color=white size=2><br>
+<b>This presentation contains content that your browser is unable to display. This presentation was optimized for the recent version of Microsoft Internet Explorer and Netscape Navigator 4.</b></font></p>
+</center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/filelist.xml b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/filelist.xml
new file mode 100755
index 00000000..4a47f1fe
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/filelist.xml
@@ -0,0 +1 @@
+<xml xmlns:o="urn:schemas-microsoft-com:office:office">
+ <o:File HRef="master03.htm"/>
+ <o:File HRef="master02.htm"/>
+ <o:File HRef="slide0001.htm"/>
+ <o:File HRef="master03_background.png"/>
+ <o:File HRef="slide0001_image001.png"/>
+ <o:File HRef="slide0002.htm"/>
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+ <o:File HRef="frame.htm"/>
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+ <o:File HRef="endshow.htm"/>
+ <o:File HRef="navigation_bar.htm"/>
+ <o:File HRef="fullscreen.htm"/>
+ <o:File HRef="fs_navigation_bar.htm"/>
+ <o:File HRef="outline_navigation_bar.htm"/>
+ <o:File HRef="outline_collapsed.htm"/>
+ <o:File HRef="outline_expanded.htm"/>
+ <o:File HRef="slide0001_notes_pane.htm"/>
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+ <o:File HRef="filelist.xml"/>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/frame.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/frame.htm
new file mode 100755
index 00000000..2981fa86
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/frame.htm
@@ -0,0 +1,43 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script><script language=JavaScript><!--
+base = parent;//-->
+</script><script language=JavaScript src=script.js></script>
+</head>
+<script> <!--
+function getSlideName() {
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+}
+
+function getNotesName() {
+	return parent.GetHrefObj( parent.g_currentSlide ).m_notesHref;
+}
+
+function restore() {
+	self.location.reload();
+}
+
+function WriteMe() {
+	if ( true )
+ 	  document.write( '<frameset cols=\"20%,*\" id=PPTHorizAdjust >' +
+	  '<frame src=\"outline_collapsed.htm\" name=PPTOtl>' );
+	  var distribution;
+	if ( parent.includeNotes ) 
+		distribution = "*,20%";
+	else 
+		distribution = "*,0";		
+	document.write('<frameset rows=\"' + distribution + '\" id=PPTVertAdjust >' +
+	'<frame src=' + getSlideName() + ' name=PPTSld>' +
+	'<frame src=' + getNotesName() + ' name=PPTNts>' );
+	document.write('</frameset>');
+	if ( true )
+	  document.write(' </frameset>' );
+}
+
+if ( parent.msie < 0 ) {
+	self.onresize = restore;
+}
+
+WriteMe();
+//-->
+</script>
+</html>
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new file mode 100755
index 00000000..2b5174d1
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/fs_navigation_bar.htm
@@ -0,0 +1,84 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
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+	window.location.replace( "endshow.htm" );
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/master02.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/master02.htm
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+}
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+  		document.write( '<td align=left><a href=\"javascript:parent.ShowHideNotes()\">' + 
+  		' <img src=\"notes_flag.gif\" border=0  title=\"  Notes\" alt=\"  Notes\">' + ' </a> </td>  ' );
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+</script></center>
+</body>
+</html>
+\ No newline at end of file
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Robots content=NoIndex>
+<style>
+<!--a {text-decoration: none;}-->
+</style>
+</head>
+<body bgcolor=black text=white link=white vlink=white alink=white
+onload=" parent.base.highlite();" onresize="self.location.reload();">
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID1 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p1" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('1')" id=AREF>GeneNetwork and WebQTL:</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID2 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p2" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('2')" id=AREF>Slide 2</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID3 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p3" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('3')" id=AREF>Slide 3</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID4 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p4" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('4')" id=AREF><font face="Gill Sans">Search
+  results</font></a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID5 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p5" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('5')" id=AREF>&quot;First page of data:&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID6 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p6" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('6')" id=AREF>&quot;Data sources:&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID7 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p7" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('7')" id=AREF>&quot;Expression estimates
+  for App on...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID8 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p8" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('8')" id=AREF>&quot;Critiquing the App
+  data the...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID9 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p9" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('9')" id=AREF>&quot;App expression after
+  windsorizing&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID10 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p10" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('10')" id=AREF>&quot;Discovering shared
+  expression patterns&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID11 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p11" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('11')" id=AREF>&quot;Transcript
+  neighborhoods&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID12 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p12" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('12')" id=AREF>&quot;App and Atcay
+  transcript scatterplot&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID13 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p13" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('13')" id=AREF>&quot;App transcript and
+  eight of...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID14 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p14" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('14')" id=AREF>App transcript coexpression
+  neighborhood</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID15 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p15" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('15')" id=AREF>&quot;Correlations of App
+  with classical...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID16 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p16" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('16')" id=AREF>&quot;Network Graph of App
+  with...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID17 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p17" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('17')" id=AREF>&quot;Summary of Part 1:&quot;</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID18 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p18" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('18')" id=AREF>Contact for comments and
+  improvements:</a></b></font></td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
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new file mode 100755
index 00000000..a45e9c0c
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_expanded.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Robots content=NoIndex>
+<style>
+<!--a {text-decoration: none;}-->
+</style>
+</head>
+<body bgcolor=black text=white link=white vlink=white alink=white
+onload=" parent.base.highlite();" onresize="self.location.reload();">
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID1 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p1" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('1')" id=AREF>GeneNetwork and WebQTL:</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Part 1: How to study expression
+  variation and covariation (slides 2&#8211;16)</font></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Part 2. Discovering upstream modulators
+  (slides 17&#8211;30)</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID2 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p2" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('2')" id=AREF>Slide 2</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID3 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p3" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('3')" id=AREF>Slide 3</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID4 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p4" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('4')" id=AREF><font face="Gill Sans">Search
+  results</font></a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID5 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p5" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('5')" id=AREF>&quot;First page of data:&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>First page of data: The Trait Data and
+  Analysis Form</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID6 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p6" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('6')" id=AREF>&quot;Data sources:&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Data sources: Metadata for each
+  resource</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID7 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p7" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('7')" id=AREF>&quot;Expression estimates
+  for App on...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Expression estimates for App on the
+  Trait Data form</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID8 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p8" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('8')" id=AREF>&quot;Critiquing the App
+  data the...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Critiquing the App data the Trait Data</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID9 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p9" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('9')" id=AREF>&quot;App expression after
+  windsorizing&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>App expression after windsorizing</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID10 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p10" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('10')" id=AREF>&quot;Discovering shared
+  expression patterns&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Discovering shared expression patterns</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID11 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p11" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('11')" id=AREF>&quot;Transcript
+  neighborhoods&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Transcript neighborhoods</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID12 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p12" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('12')" id=AREF>&quot;App and Atcay
+  transcript scatterplot&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>App and Atcay transcript scatterplot</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID13 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p13" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('13')" id=AREF>&quot;App transcript and
+  eight of...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>App transcript and eight of its
+  neighbors</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID14 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p14" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('14')" id=AREF>App transcript coexpression
+  neighborhood</a></b></font></td>
+ </tr>
+</table>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID15 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p15" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('15')" id=AREF>&quot;Correlations of App
+  with classical...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Correlations of App with classical
+  traits</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID16 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p16" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('16')" id=AREF>&quot;Network Graph of App
+  with...&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Network Graph of App with classical
+  traits</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID17 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p17" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('17')" id=AREF>&quot;Summary of Part 1:&quot;</a></b></font></td>
+ </tr>
+</table>
+<table>
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td colspan=1><font face=Arial size=2>Summary of Part 1:</font></td>
+ </tr>
+</table>
+<br>
+<table  width=100%>
+ <tr>
+  <td width=1 ><script> if ( parent.base.isnav ) { document.write('<ilayer id= LAYERID18 VISIBILITY=hidden >&gt;</ilayer>'); } </script></td>
+  <td width=100%  id="p18" ><font face=Arial size=2><b><a
+  href="javascript:parent.base.Slide('18')" id=AREF>Contact for comments and
+  improvements:</a></b></font></td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_navigation_bar.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_navigation_bar.htm
new file mode 100755
index 00000000..f47a3707
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/outline_navigation_bar.htm
@@ -0,0 +1,37 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script><script language=JavaScript><!--
+
+function restore() {
+if( navigator.platform != "MacPPC" )
+	self.location.reload();
+}
+
+function writebody() {
+
+	if ( parent.g_showoutline ) {
+			document.write('<table border=0 valign=top cellspacing=0 width=\"100%\">' + 
+			'<tr valign=top><td align=left valign=top>' );
+			  document.write( '<a href=\"javascript:parent.ToggleOutline()\" ><img src=\"outline.gif\" title=\"Show/Hide Outline\" alt=\"Show/Hide Outline\" border=0></a>' );
+			  document.write( '</td>' );
+		if( parent.g_outline_href == parent.OUTLINE_EXPAND_HREF ) {
+			document.write( '<td align=right valign=top><a href=\"javascript:parent.CollapseOutline()\">' +
+			'<img src="outline_collapse.gif" title="Collapse Outline" alt="Collapse Outline" border=0>' +  
+			'</a></td>');
+		} else {
+			document.write('<td align=right valign=top><a href=\"javascript:parent.ExpandOutline()\">' +
+			'<img src="outline_expand.gif" title="Expand Outline" alt="Expand Outline" border=0>' + 
+			 '</a></td>');
+		}
+		document.write("</tr></table>");
+	}
+	else {
+			document.write( '<table border=0 valign=top cellspacing=0 width=\"100%\"><td align=\"left\"><a href=\"javascript:parent.ToggleOutline()\" ><img border=0 src=\"outline.gif\" title=\"Show/Hide Outline\" alt=\"Show/Hide Outline\"></a></td></table>' );
+	}
+}//-->
+</script>
+</head>
+<body background=navbg.gif topmargin=1 onresize="restore()" scroll="no" >
+<script language=JavaScript><!--
+writebody();
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_active.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_active.gif
new file mode 100755
index 00000000..004a872f
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_active.gif
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_disabled.gif b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_disabled.gif
new file mode 100755
index 00000000..8a467185
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/prev_disabled.gif
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/script.js b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/script.js
new file mode 100755
index 00000000..7c9fb703
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/script.js
@@ -0,0 +1,1351 @@
+var CtxAlwaysOn = false;
+function LoadSld( slideId )
+{
+	if( !g_supportsPPTHTML ) return
+	if( slideId )
+		parent.base.SldUpdated(slideId)
+	g_origSz=parseInt(SlideObj.style.fontSize)
+	g_origH=SlideObj.style.posHeight
+	g_origW=SlideObj.style.posWidth
+	g_scaleHyperlinks=(document.all.tags("AREA").length>0)
+	if ( IsWin("PPTSld") && !parent.IsFullScrMode() )
+		parent.base.highlite();	
+	if( g_scaleHyperlinks )
+		InitHLinkArray()
+	if( g_scaleInFrame||(IsWin("PPTSld") && parent.IsFullScrMode() ) )
+		document.body.scroll="no"
+	_RSW()
+	if( IsWin("PPTSld") && (parent.IsFullScrMode() || CtxAlwaysOn ) )	{
+		document.oncontextmenu=parent._CM;
+	self.focus(); 
+
+	}
+}
+function MakeSldVis( fTrans ) 
+{
+	fTrans=fTrans && g_showAnimation
+	if( fTrans )
+	{
+		if( g_bgSound ) {
+			idx=g_bgSound.indexOf(",");
+			pptSound.src=g_bgSound.substr( 0, idx );
+			pptSound.loop= -(parseInt(g_bgSound.substr(idx+1)));
+		}
+		SlideObj.filters.revealtrans.Apply()
+	}
+	SlideObj.style.visibility="visible"
+	if( fTrans )
+		SlideObj.filters.revealtrans.Play()
+}
+function MakeNotesVis() 
+{
+	if( !IsNts() ) return false 
+	SlideObj.style.display="none"
+	nObj = document.all.item("NotesObj")
+	parent.SetHasNts(0)
+	if( nObj ) { 
+		nObj.style.display=""
+		parent.SetHasNts(1)
+	}
+	return 1
+}
+function Redirect( frmId,sId )
+{
+	var str=document.location.hash,idx=str.indexOf('#')
+	if(idx>=0) str=str.substr(1);
+	if( window.name != frmId && ( sId != str) ) {
+		obj = document.all.item("Main-File")
+		window.location.href=obj.href+"#"+sId
+		return 1
+	}
+	return 0
+}
+function HideMenu() { if( frames["PPTSld"] && PPTSld.document.all.item("ctxtmenu") && PPTSld.ctxtmenu.style.display!="none" ) { PPTSld.ctxtmenu.style.display='none'; return true } return false }
+function IsWin( name ) { return window.name == name }
+function IsNts() { return IsWin("PPTNts") }
+function IsSldOrNts() { return( IsWin("PPTSld")||IsWin("PPTNts") ) }
+function SupportsPPTAnimation() { return( navigator.platform == "Win32" && navigator.appVersion.indexOf("Windows")>0 ) }
+function SupportsPPTHTML()
+{
+	var appVer=navigator.appVersion, msie=appVer.indexOf( "MSIE " ), inex = appVer.indexOf( "Internet Explorer " ), ver=0
+	if( msie >= 0 )
+		ver=parseFloat( appVer.substring( msie+5, appVer.indexOf(";",msie) ) )
+	else if( inex >= 0 )
+		ver=parseFloat( appVer.substring( inex+18, appVer.indexOf(";",inex) ) )
+	else
+		ver=parseInt(appVer)
+
+	return( ver >= 4  )
+}
+var MHTMLPrefix = CalculateMHTMLPrefix(); 
+function CalculateMHTMLPrefix()
+{
+	if ( document.location.protocol == 'mhtml:') { 
+		href=new String(document.location.href) 
+		Start=href.indexOf('!')+1 
+		End=href.lastIndexOf('/')+1 
+		if (End < Start) 
+			return href.substring(0, Start) 
+		else 
+		return href.substring(0, End) 
+	}
+	return '';
+}
+
+function LoadNavSld(slideId) {
+playList();
+parent.createCM();
+	if( !g_supportsPPTHTML ) return
+	if( IsWin("PPTSld") && slideId )
+		parent.base.SldUpdated(slideId)
+	self.focus(); 
+
+}
+var hasNarration = false;
+function _RSW()
+{
+	if( !g_supportsPPTHTML || IsNts() ||
+	  ( !g_scaleInFrame && (( window.name != "PPTSld" ) ) ) )
+		return
+
+	cltWidth=document.body.clientWidth
+	cltHeight=document.body.clientHeight
+	factor=(1.0*cltWidth)/g_origW
+	if( cltHeight < g_origH*factor )
+		factor=(1.0*cltHeight)/g_origH
+
+	newSize = g_origSz * factor
+	if( newSize < 1 ) newSize=1
+
+	s=SlideObj.style
+	s.fontSize=newSize+"px"
+	s.posWidth=g_origW*factor
+	s.posHeight=g_origH*factor
+	s.posLeft=(cltWidth-s.posWidth)/2
+	s.posTop=(cltHeight-s.posHeight)/2
+
+	if ( hasNarration ) {
+		obj = document.all.NSPlay.style;
+		mySld = document.all.SlideObj.style;
+		obj.position = 'absolute';
+		obj.posTop = mySld.posTop + mySld.posHeight - 20;
+		obj.posLeft = mySld.posLeft + mySld.posWidth - 20;
+	}
+	if( g_scaleHyperlinks )
+		ScaleHyperlinks( factor );	
+}
+function IsMac() {
+	return (window.navigator.platform.indexOf("Mac") >= 0 );
+}
+
+function HitOK( evt ) {
+	//Nav Only function
+	return (evt.which == 1 || (IsMac() && evt.which == 3) );
+}
+function _KPH(event)
+{ 
+
+  if ( parent.base.msie < 0 )  {
+    
+    	if ( ( (event.target.name && event.target.name == "hasMap" ) || (event.target.href && event.target.href != "") ) && parent.g_docTable[0].type != "jpeg" && HitOK( event )  ) {
+    		return; /* to make hyperlinks in fullscreen mode traversable */
+    	}
+	if( IsContextMenu() )
+		return parent.KPH(event);
+  	if ( parent.IsFullScrMode()  && event.which == 27 )
+  		parent.base.CloseFullScreen();
+  	else if ( parent.base.IsFullScrMode() && ( (!IsMac() && event.which == 3) || ( IsMac() && (event.modifiers & Event.CONTROL_MASK) && event.which == 1 ) ) )
+  		return parent.KPH(event);
+  	else if( (event.which == 32) ||  (event.which == 13) || HitOK( event )  ) {
+	    if( window.name == "PPTSld" )
+	      parent.PPTSld.DocumentOnClick();
+	    else
+	      parent.M_GoNextSld();
+      }	
+      else if ( parent.IsFullScrMode() && ((event.which == 78)  || (event.which == 110) || (event.which == 29) || (event.which == 31) || (event.which == 12)) )
+  		parent.M_GoNextSld();
+      else if ( parent.IsFullScrMode() && ( (event.which == 80)  || (event.which == 112) || (event.which == 30) || (event.which == 28) || (event.which == 11) || (event.which == 8)) )
+  		parent.M_GoPrevSld();
+
+      return;
+   }
+  	
+  if( IsNts() ) return;
+
+  if(parent.IsFullScrMode()  && event.keyCode == 27 && !parent.HideMenu() )
+    parent.base.CloseFullScreen();
+  else if( (event.keyCode == 32) || (event.keyCode == 13) )
+  {
+    if( window.name == "PPTSld" )
+      parent.PPTSld.DocumentOnClick();
+   else
+      parent.M_GoNextSld();
+  }
+  else if ( parent.IsFullScrMode() && ((event.keyCode == 78)  || (event.keyCode == 110)) )
+  	parent.M_GoNextSld();
+  else if ( parent.IsFullScrMode() && ((event.keyCode == 80)  || (event.keyCode == 112)) )
+  	parent.M_GoPrevSld();
+}
+
+function DocumentOnClick(event)
+{
+		if ( g_doAdvOnClick && !parent.IsFullScrMode() ) {
+			parent.base.TP_GoToNextSld();	
+			return;
+		}
+		
+	if ( parent.base.msie < 0 ) 
+	{
+		if( ( g_allowAdvOnClick  && parent.IsFullScrMode() ) || g_doAdvOnClick ||
+		    (event && ( (event.which == 32) || (event.which == 13) ) ) )
+			parent.M_GoNextSld();
+			return;
+	}		
+	if( IsNts() || (parent.IsFullScrMode() && parent.HideMenu() ) ) return;
+	if( ( g_allowAdvOnClick && parent.IsFullScrMode() ) || g_doAdvOnClick ||
+	    (event && ( (event.keyCode==32) || (event.keyCode == 13) ) ) )
+		parent.M_GoNextSld();
+}
+
+
+var g_supportsPPTHTML = SupportsPPTHTML(), g_scaleInFrame = true, gId="", g_bgSound="",
+    g_scaleHyperlinks = false, g_allowAdvOnClick = true, g_showInBrowser = false, g_doAdvOnClick = false;
+
+ var g_showAnimation = 0;
+var g_hasTrans = false, g_autoTrans = false, g_transSecs = 0;
+var g_animManager = null;
+
+var ENDSHOW_MESG="End of slide show, click to exit.", SCREEN_MODE="Frames", gIsEndShow=0, NUM_VIS_SLDS=18, SCRIPT_HREF="script.js", FULLSCR_HREF="fullscreen.htm";
+var gCurSld = gPrevSld = 1, g_offset = 0, gNtsOpen = gHasNts = gOtlTxtExp = gNarrationPaused = false, gOtlOpen = true
+window.gPPTHTML=SupportsPPTHTML()
+var g_hideNav = 0;
+function UpdNtsPane(){ PPTNts.location.replace( MHTMLPrefix+GetHrefObj( gCurSld ).mNtsHref ) }
+function UpdNavPane( sldIndex ){ if(gNavLoaded) PPTNav.UpdNav() }
+function UpdOtNavPane(){ if(gOtlNavLoaded) PPTOtlNav.UpdOtlNav() }
+function UpdOtlPane(){ if(gOtlLoaded) PPTOtl.UpdOtl() }
+function SetHasNts( fVal )
+{
+	if( gHasNts != fVal ) {
+		gHasNts=fVal
+		UpdNavPane()
+	}
+}
+
+function ToggleVNarration()
+{
+	if ( base.msie < 0 ) {
+		PPTSld.ToggleSound( false, PPTSld.document.NSPlay );
+		return;
+	}
+	
+	rObj=PPTSld.document.all("NSPlay")
+	if( rObj ) {
+		if( gNarrationPaused )
+			rObj.Play()
+		else
+			rObj.Pause()
+
+		gNarrationPaused=!gNarrationPaused
+	}
+}
+
+function PrevSldViewed(){ GoToSld( GetHrefObj(gPrevSld).mSldHref ) }
+function HasPrevSld() { return ( gIsEndShow || ( g_currentSlide != 1 && GetHrefObj( g_currentSlide-1 ).mVis == 1 )||( GetCurrentSlideNum() > 1 ) ) }
+function HasNextSld() { return (GetCurrentSlideNum() != GetNumSlides()) }
+function StartEndShow()
+{
+//	g_hideNav = 1;
+//	PPTNav.location.reload();
+	if( PPTSld.event ) PPTSld.event.cancelBubble=true
+
+	doc=PPTSld.document
+	doc.open()
+	doc.writeln('<html><head><script > /*defer>*/ g_ctxmenu = 0; ' +
+	'if( parent.base.msie < 0 )  { document.captureEvents(Event.KEYPRESS); document.captureEvents(Event.MOUSEDOWN); document.onkeypress = _KPH; document.onmousedown = _KPH; } ' +
+	'function DocumentOnClick(event) { return _KPH(event); }  function IsContextMenu() { return (g_ctxmenu ==1); } ' +
+	'function _KPH(event)' +
+	'{  ' +
+	'if ( parent.base.msie < 0  && (parent.IsFullScrMode() ) && event ) { if ( (!parent.IsMac() && event.which == 3) || ( parent.IsMac() && (event.modifiers & Event.CONTROL_MASK) && event.which == 1 ) )  { return parent.KPH(event); } ' + 
+	' else if (event.which == 27 || event.which == 32 || event.which == 13 || parent.HitOK( event ) || (event.which == 78)  || (event.which == 110) || (event.which == 29) || (event.which == 31) || (event.which == 12) ) { if ( IsContextMenu() ) { return parent.KPH(event); }  parent.base.CloseFullScreen(); return; } ' +
+	' else if ( (event.which == 80)  || (event.which == 112) || (event.which == 30) || (event.which == 28) || (event.which == 11) || (event.which == 8) ) { parent.M_GoPrevSld(); } } ' +
+	'if( parent.HideMenu() ) return; if( (parent.IsFullScrMode() ) && event) { if ( (event.keyCode==27 || event.keyCode == 13 || event.keyCode==32 || event.type=="click" ) || (event.keyCode == 78)  || (event.keyCode == 110) ) { parent.base.CloseFullScreen(); }' +
+	' else if ( (event.keyCode == 80)  || (event.keyCode == 112) ) { parent.M_GoPrevSld(); } } } function Unload() { parent.gIsEndShow=0; } function SetupEndShow() {    if ( !parent.IsFullScrMode() ) { return; } else { parent.PPTNav.location.reload(); }  parent.gIsEndShow=1; if ( parent.g_docTable[0].type != "jpeg" ) { if ( parent.base.msie < 0 ) {parent.createCM(); } document.oncontextmenu=parent._CM; } }</script></head><body scroll=\"no\" onclick=\"DocumentOnClick(event)\" onkeypress=\"_KPH(event)\" bgcolor=\"black\" onload=\"SetupEndShow()\" onunload=\"Unload()\"><center><p><font face=Tahoma color=white size=2><br><b>' + ENDSHOW_MESG + '</b></font></p></center></body></html>')
+	doc.close()
+}
+function SetSldVisited(){ gDocTable[gCurSld-1].mVisited=true }
+function IsSldVisited(){ return gDocTable[gCurSld-1].mVisited }
+function hrefList( sldHref, visible, sldIdx )
+{
+	this.mSldHref= this.mNtsHref = sldHref
+	this.mSldIdx = sldIdx
+	this.mOrigVis= this.mVis = visible
+	this.mVisited= false
+}
+var gDocTable = new Array(
+   new hrefList("slide0001.htm", 1, 1),
+   new hrefList("slide0002.htm", 1, 2),
+   new hrefList("slide0003.htm", 1, 3),
+   new hrefList("slide0004.htm", 1, 4),
+   new hrefList("slide0005.htm", 1, 5),
+   new hrefList("slide0006.htm", 1, 6),
+   new hrefList("slide0007.htm", 1, 7),
+   new hrefList("slide0008.htm", 1, 8),
+   new hrefList("slide0009.htm", 1, 9),
+   new hrefList("slide0010.htm", 1, 10),
+   new hrefList("slide0011.htm", 1, 11),
+   new hrefList("slide0012.htm", 1, 12),
+   new hrefList("slide0013.htm", 1, 13),
+   new hrefList("slide0014.htm", 1, 14),
+   new hrefList("slide0015.htm", 1, 15),
+   new hrefList("slide0016.htm", 1, 16),
+   new hrefList("slide0017.htm", 1, 17),
+   new hrefList("slide0018.htm", 1, 18)
+);
+
+function ImgBtn( oId,bId,w,action )
+{
+	var t=this
+	t.Perform    = _IBP
+	t.SetActive  = _IBSetA
+ t.SetInactive= _IBSetI
+	t.SetPressed = _IBSetP
+	t.SetDisabled= _IBSetD
+	t.Enabled    = _IBSetE
+	t.ChangeIcon = null
+	t.UserAction = action
+	t.ChgState   = _IBUI
+	t.mObjId   = oId
+	t.mBorderId= bId
+	t.mWidth   = w
+	t.mIsOn    = t.mCurState = 0
+}
+function _IBSetA()
+{
+	if( this.mIsOn ) {
+		obj=this.ChgState( gHiliteClr,gShadowClr,2 )
+		obj.style.posTop=0
+	}
+}
+function _IBSetI()
+{
+	if( this.mIsOn ) {
+		obj=this.ChgState( gFaceClr,gFaceClr,1 )
+		obj.style.posTop=0 
+	}
+}
+function _IBSetP()
+{
+	if( this.mIsOn ) {
+		obj=this.ChgState( gShadowClr,gHiliteClr,2 )
+		obj.style.posLeft+=1; obj.style.posTop+=1
+	}
+}
+function _IBSetD()
+{  
+	obj=this.ChgState( gFaceClr,gFaceClr,0 )
+	obj.style.posTop=0 
+}
+function _IBSetE( state )
+{
+	var t=this
+	GetObj( t.mBorderId ).style.visibility="visible"
+	if( state != t.mIsOn ) {
+		t.mIsOn=state
+		if( state )
+			t.SetInactive()
+		else
+			t.SetDisabled()
+	}
+}
+function _IBP()
+{
+	var t=this
+	if( t.mIsOn ) {
+		if( t.UserAction != null )
+			t.UserAction()
+		if( t.ChangeIcon ) {
+			obj=GetObj(t.mObjId)
+			if( t.ChangeIcon() )
+				obj.style.posLeft=obj.style.posLeft+(t.mCurState-4)*t.mWidth
+			else
+				obj.style.posLeft=obj.style.posLeft+(t.mCurState-0)*t.mWidth
+		}
+		t.SetActive()
+	}  
+}
+function _IBUI( clr1,clr2,nextState )
+{
+	var t=this
+	SetBorder( GetObj( t.mBorderId ),clr1,clr2 )
+	obj=GetObj( t.mObjId )
+	obj.style.posLeft=obj.style.posLeft+(t.mCurState-nextState)*t.mWidth-obj.style.posTop
+	t.mCurState=nextState
+	return obj
+}
+function TxtBtn( oId,oeId,action,chkState )
+{
+	var t=this
+	t.Perform    = _TBP
+	t.SetActive  = _TBSetA
+	t.SetInactive= _TBSetI
+	t.SetPressed = _TBSetP
+	t.SetDisabled= _TBSetD
+	t.SetEnabled = _TBSetE
+	t.GetState   = chkState
+	t.UserAction = action
+	t.ChgState   = _TBUI
+	t.mObjId      = oId
+	t.m_elementsId= oeId
+	t.mIsOn       = 1
+}
+function _TBSetA()
+{
+	var t=this
+	if( t.mIsOn && !t.GetState() )
+		t.ChgState( gHiliteClr,gShadowClr,0,0 )
+}
+function _TBSetI()
+{
+	var t=this
+	if( t.mIsOn && !t.GetState() )
+		t.ChgState( gFaceClr,gFaceClr,0,0 )
+}
+function _TBSetP()
+{
+	if( this.mIsOn )
+		this.ChgState( gShadowClr,gHiliteClr,1,1 )
+}
+function _TBSetD()
+{   
+	this.ChgState( gFaceClr,gFaceClr,0,0 )
+	this.mIsOn = 0
+}
+function _TBSetE()
+{
+	var t=this
+	if( !t.GetState() )
+		t.ChgState( gFaceClr,gFaceClr,0,0 )
+	else
+		t.ChgState( gShadowClr,gHiliteClr,1,1 )
+	t.mIsOn = 1
+}
+function _TBP()
+{
+	var t=this
+	if( t.mIsOn ) { 
+		if( t.UserAction != null )
+			t.UserAction()
+		if( t.GetState() )
+			t.SetPressed()
+		else
+			t.SetActive()
+	}  
+}
+function _TBUI( clr1,clr2,lOffset,tOffset )
+{
+	SetBorder( GetObj( this.mObjId ),clr1,clr2 )
+	Offset( GetObj( this.m_elementsId ),lOffset,tOffset )
+}
+function GetObj( objId ){ return document.all.item( objId ) }
+function Offset( obj, top, left ){ obj.style.top=top; obj.style.left=left }
+function SetBorder( obj, upperLeft, lowerRight )
+{
+	s=obj.style;
+	s.borderStyle      = "solid"
+	s.borderWidth      = 1 
+	s.borderLeftColor  = s.borderTopColor = upperLeft
+	s.borderBottomColor= s.borderRightColor = lowerRight
+}
+function GetBtnObj(){ return gBtnArr[window.event.srcElement.id] }
+function BtnOnOver(){ b=GetBtnObj(); if( b != null ) b.SetActive() }
+function BtnOnDown(){ b=GetBtnObj(); if( b != null ) b.SetPressed() }
+function BtnOnOut(){ b=GetBtnObj(); if( b != null ) b.SetInactive() }
+function BtnOnUp()
+{
+	b=GetBtnObj()
+	if( b != null )
+		b.Perform()
+	else
+		Upd()
+}
+function GetNtsState(){ return parent.gNtsOpen }
+function GetOtlState(){ return parent.gOtlOpen }
+function GetOtlTxtState(){ return parent.gOtlTxtExp }
+function NtsBtnSetFlag( fVal )
+{
+	s=document.all.item( this.m_flagId ).style
+	s.display="none"
+	if( fVal )
+		s.display=""
+	else
+		s.display="none"
+}
+
+var gHiliteClr="THREEDHIGHLIGHT",gShadowClr="THREEDSHADOW",gFaceClr="THREEDFACE"
+var gBtnArr = new Array()
+gBtnArr["nb_otl"] = new TxtBtn( "nb_otl","nb_otlElem",parent.ToggleOtlPane,GetOtlState )
+gBtnArr["nb_nts"] = new TxtBtn( "nb_nts","nb_ntsElem",parent.ToggleNtsPane,GetNtsState )
+gBtnArr["nb_prev"]= new ImgBtn( "nb_prev","nb_prevBorder",30,parent.GoToPrevSld )
+gBtnArr["nb_next"]= new ImgBtn( "nb_next","nb_nextBorder",30,parent.GoToNextSld )
+gBtnArr["nb_sldshw"]= new ImgBtn( "nb_sldshw","nb_sldshwBorder",18,parent.FullScreen )
+gBtnArr["nb_voice"]  = new ImgBtn( "nb_voice","nb_voiceBorder",18,parent.ToggleVNarration )
+gBtnArr["nb_otlTxt"]= new ImgBtn( "nb_otlTxt","nb_otlTxtBorder",23,parent.ToggleOtlText )
+gBtnArr["nb_nts"].m_flagId= "notes_flag"
+gBtnArr["nb_nts"].SetFlag = NtsBtnSetFlag
+gBtnArr["nb_otlTxt"].ChangeIcon= GetOtlTxtState
+var sNext="Next",sPrev="Previous",sEnd="End Show",sFont="Arial", alwaysOn = false
+function ShowMenu()
+{
+	BuildMenu();
+	var doc=PPTSld.document.body,x=PPTSld.event.clientX+doc.scrollLeft,y=PPTSld.event.clientY+doc.scrollTop
+
+	m = PPTSld.document.all.item("ctxtmenu")
+	m.style.pixelLeft=x
+	if( (x+m.scrollWidth > doc.clientWidth)&&(x-m.scrollWidth > 0) )
+		m.style.pixelLeft=x-m.scrollWidth
+
+	m.style.pixelTop=y
+	if( (y+m.scrollHeight > doc.clientHeight)&&(y-m.scrollHeight > 0) )
+		m.style.pixelTop=y-m.scrollHeight
+
+	m.style.display=""
+}
+function _CM()
+{
+	if( !parent.IsFullScrMode() && !alwaysOn) return;
+	
+	if(!PPTSld.event.ctrlKey) {
+		ShowMenu()
+		return false
+	} else
+		HideMenu()
+}
+
+function processNavKPH(event) {
+   if ( PPTSld &&  (event.keyCode != 13 || !event.srcElement.href || event.srcElement.href == "" ) )
+	return PPTSld._KPH(event);
+}
+function processNavClick() {
+	HideMenu();
+	return true;
+}
+function BuildMenu()
+{
+	if( PPTSld.document.all.item("ctxtmenu") ) return
+
+	var mObj=CreateItem( PPTSld.document.body )
+mObj.id="ctxtmenu"
+	var s=mObj.style
+	s.position="absolute"
+ s.cursor="default"
+	s.width="100px"
+	SetCMBorder(mObj,"menu","black")
+
+	var iObj=CreateItem( mObj )
+	SetCMBorder( iObj, "threedhighlight","threedshadow" )
+	iObj.style.padding=2
+	if ( self.IsFullScrMode() ) {
+		CreateMenuItem( iObj,sNext,M_GoNextSld,M_True )
+		CreateMenuItem( iObj,sPrev,M_GoPrevSld,M_HasPrevSld )
+	}
+	else {
+		CreateMenuItem( iObj,sNext, base.TP_GoToNextSld, base.HasNextSld )
+		CreateMenuItem( iObj,sPrev,base.GoToPrevSld, base.HasPrevSld )
+	}
+	var sObj=CreateItem( iObj )
+	SetCMBorder(sObj,"menu","menu")
+	var s=sObj.style
+	s.borderTopColor="threedshadow"
+	s.borderBottomColor="threedhighlight"
+	s.height=1
+	s.fontSize="0px"
+	if ( self.IsFullScrMode() ) 
+		CreateMenuItem( iObj,sEnd,M_End,M_True )
+	else
+		CreateMenuItem( iObj,sEnd,M_End,M_False )
+}
+function Highlight() { ChangeClr("activecaption","threedhighlight") }
+function Deselect() { ChangeClr("threedface","menutext") }
+function Perform()
+{
+	e=PPTSld.event.srcElement
+	if( e.type=="menuitem" && e.IsActive() )
+		e.Action()
+	else
+		PPTSld.event.cancelBubble=true
+}
+function ChangeClr( bg,clr )
+{
+	e=PPTSld.event.srcElement
+	if( e.type=="menuitem" && e.IsActive() ) {
+		e.style.backgroundColor=bg
+		e.style.color=clr
+	}
+}
+
+function M_HasPrevSld() { return( base.HasPrevSld() ) }
+function M_GoNextSld() { 
+	base.SetFSMode(1);
+	if( gIsEndShow )
+		 M_End();
+	else {
+		if ( base.HasNextSld() )
+		 base.GoToNextSld();
+		else if (  base.EndSlideShow ) {
+		 StartEndShow();
+		 gIsEndShow = 1;
+		 
+		 PPTNav.location.reload();
+		}
+		else
+			base.CloseFullScreen();
+	}
+}
+function M_GoPrevSld() {
+	base.SetFSMode(1);
+	g_hideNav = 0;
+	if( gIsEndShow ) { 
+		gIsEndShow = 0;
+		if ( base.msie > 0 && IsMac() ) 
+			ChangeFrame( SLIDE_FRAME, GetHrefObj( g_currentSlide ).m_slideHref );
+		else	
+		PPTSld.history.back();
+		
+		 PPTNav.location.reload();
+		if( PPTSld.event )
+			 PPTSld.event.cancelBubble=true;
+	}
+	else
+	 	base.GoToPrevSld();
+}
+function M_True() { return true }
+function M_False() { return false }
+
+function M_End() {
+	base.CloseFullScreen();
+	/*PPTSld.event.cancelBubble=true;
+	window.close( self )*/
+}
+
+function CreateMenuItem( node,text,action,eval )
+{
+	var e=CreateItem( node )
+	e.type="menuitem"
+	e.Action=action
+	e.IsActive=eval
+	e.innerHTML=text
+
+	if( !e.IsActive() )
+		e.style.color="threedshadow"
+	e.onclick=Perform
+	e.onmouseover=Highlight
+	e.onmouseout=Deselect
+	s=e.style;
+	s.fontFamily=sFont
+	s.fontSize="8pt"
+	s.paddingLeft=2
+}
+function CreateItem( node )
+{
+	var elem=PPTSld.document.createElement("DIV")
+	node.insertBefore( elem )
+	return elem
+}
+function SetCMBorder( o,ltClr,rbClr )
+{
+	var s=o.style
+	s.backgroundColor="menu"
+	s.borderStyle="solid"
+	s.borderWidth=1
+	s.borderColor=ltClr+" "+rbClr+" "+rbClr+" "+ltClr
+}
+
+/* netscape context menu */
+g_ctxmenu = 0;
+function setRect( obj, X, Y, W, H ) {
+	obj.top = Y;
+	obj.left = X;
+	obj.clip.top = 0;
+	obj.clip.left = 0;
+	obj.clip.bottom = H;
+	obj.clip.right = W;
+}	
+
+function KPH(event) {
+	if ( ! base.IsFullScrMode() && !alwaysOn )
+		return true;
+		
+	if ( (!IsMac() &&event.which == 3) || ( IsMac() && (event.modifiers & Event.CONTROL_MASK) && event.which == 1 )   ) {
+		PPTSld.g_ctxmenu = 1;
+		PPTSld.stripUobj.visibility = "show";
+		PPTSld.stripDobj.visibility = "show";
+		PPTSld.shadeUobj.visibility = "show";
+		PPTSld.shadeDobj.visibility = "show";
+		PPTSld.panelobj.visibility = "show";
+		PPTSld.Fobj.visibility = "show";
+		PPTSld.Bobj.visibility = "show";
+		PPTSld.Eobj.visibility = "show";
+
+		setRect(PPTSld.shadeUobj, event.pageX-2, event.pageY-2, 82, 67 );		
+		setRect(PPTSld.shadeDobj, event.pageX, event.pageY, 82, 67 );		
+		setRect(PPTSld.panelobj, event.pageX, event.pageY, 80, 65 );		
+		setRect(PPTSld.Fobj, event.pageX, event.pageY, 80, 20 );
+		setRect(PPTSld.Bobj, event.pageX, event.pageY+20, 80, 20 );
+		setRect(PPTSld.stripUobj, event.pageX, event.pageY+41, 80, 1 );		
+		setRect(PPTSld.stripDobj, event.pageX, event.pageY+43, 80, 1 );		
+		setRect(PPTSld.Eobj, event.pageX, event.pageY+45, 80, 20 );
+		return false;
+	}
+	if ( HitOK( event ) ) {
+	PPTSld.g_ctxmenu = 0;
+		PPTSld.stripUobj.visibility = "hide";
+		PPTSld.stripDobj.visibility = "hide";
+		PPTSld.shadeUobj.visibility = "hide";
+		PPTSld.shadeDobj.visibility = "hide";
+		PPTSld.panelobj.visibility = "hide";
+		PPTSld.Fobj.visibility = "hide";
+		PPTSld.Bobj.visibility = "hide";
+		PPTSld.Eobj.visibility = "hide";
+	}
+	return true;
+}
+
+function overMe() {
+	this.bgColor = "blue";
+}
+
+function outMe() {
+	this.bgColor = "#AAAAAA"; 
+}
+
+function makeElement( whichEl, whichContainer ) {
+	if ( arguments.length == 1 ) {
+		whichContainer = PPTSld;
+	}
+	tmp = new Layer(100,whichContainer);
+	eval( whichEl + " = tmp" );
+	return eval(whichEl);
+}
+
+function initMe( obj, clr, text ) {
+	obj.bgColor = clr;
+//	obj.document.write("<a href='javascript:return false'>" + text + "</a>");
+	obj.document.write( "<font size=2 face=Arial " );
+	if ( !M_HasPrevSld() && (obj == PPTSld.Bobj )  ) {
+		obj.document.write( " color='#808080' " );
+	}
+	else {
+		obj.onmouseover = overMe;
+		obj.onmouseout = outMe;
+	}	
+	obj.document.write( " > &nbsp " + text +"</font> <layer top=0 left=0 width=100 height=40 ></layer>");
+	obj.document.close();
+	obj.captureEvents(Event.CLICK);
+	obj.color = "black";		
+}
+
+function createCM() {
+  if ( base.IsFullScrMode() ) {
+  	var clr = "#AAAAAA";
+	PPTSld.shadeUobj = makeElement("SHADEU");
+	PPTSld.shadeDobj = makeElement("SHADED");
+	PPTSld.panelobj = makeElement("PANEL");
+	PPTSld.stripUobj = makeElement("STRIPU");
+	PPTSld.stripDobj = makeElement("STRIPD");
+	PPTSld.shadeUobj.bgColor = "#BBBBBB";
+	PPTSld.shadeDobj.bgColor = "#888888";
+	PPTSld.stripUobj.bgColor = "#777777";
+	PPTSld.stripDobj.bgColor = "#CCCCCC";
+	PPTSld.panelobj.bgColor = clr;
+	PPTSld.Fobj = makeElement("Next");
+	PPTSld.Bobj = makeElement("Previous");
+	PPTSld.Eobj = makeElement("EndShow");
+	initMe( PPTSld.Fobj, clr, "Next" );
+	PPTSld.Fobj.onclick = M_GoNextSld;
+
+	initMe( PPTSld.Bobj, clr, "Previous" );
+	PPTSld.Bobj.onclick = M_GoPrevSld;
+
+	initMe( PPTSld.Eobj, clr, "End Show");
+	PPTSld.Eobj.onclick = base.CloseFullScreen;
+  }
+}
+
+function IsContextMenu() {
+	return (g_ctxmenu == 1)
+}
+var g_notesTable = new Array()
+var g_hiddenSlide = new Array()
+makeSlide( 0,1,1);
+makeSlide( 1,1,1);
+makeSlide( 2,1,1);
+makeSlide( 3,1,1);
+makeSlide( 4,1,1);
+makeSlide( 5,1,1);
+makeSlide( 6,1,1);
+makeSlide( 7,1,1);
+makeSlide( 8,1,1);
+makeSlide( 9,1,1);
+makeSlide( 10,1,1);
+makeSlide( 11,1,1);
+makeSlide( 12,1,1);
+makeSlide( 13,1,1);
+makeSlide( 14,1,1);
+makeSlide( 15,1,1);
+makeSlide( 16,0,1);
+makeSlide( 17,1,1);
+
+var END_SHOW_HREF         = "endshow.htm",
+    OUTLINE_EXPAND_HREF   = "outline_expanded.htm",
+    OUTLINE_COLLAPSE_HREF = "outline_collapsed.htm",
+    OUTLINE_NAVBAR_HREF  = "outline_navigation_bar.htm",
+    NAVBAR_HREF           = "navigation_bar.htm",
+    BLANK_NOTES_HREF	  = "blank_notes.htm",
+    NUM_VISIBLE_SLIDES    = 18,
+    SIMPLE_FRAMESET       = 0,
+    SLIDE_FRAME	        = "PPTSld",
+    NOTES_FRAME           = "PPTNts",
+    OUTLINE_FRAME         = "PPTOtl",
+    OUTLINE_NAVBAR_FRAME  = "PPTOtlNav",
+    NAVBAR_FRAME          = "PPTNav",
+	MAIN_FRAME			  = "MainFrame",
+	FS_NAVBAR_HREF		  = "fs_navigation_bar.htm",
+	isIEFiles 			= 2,
+	isNAVFiles 			= 8,
+	isFLATFiles 			= 16,
+	includeNotes			= 1,
+	PPTPRESENTATION     = 1;
+var  INITSLIDENUM   = 1;
+
+var EndSlideShow = 0;
+var g_outline_href = OUTLINE_COLLAPSE_HREF;	
+var g_fullscrMode = 0;	
+var FSWin = null;
+var gtmpstr = document.location.href;
+var g_baseURL = gtmpstr.substr(0, gtmpstr.lastIndexOf("/") ) + "/" + "webqtl_demo2_part1.ppt_files";
+var g_showoutline = 1;
+var g_shownotes = includeNotes;
+var g_currentSlide = INITSLIDENUM, g_prevSlide = INITSLIDENUM;
+var saveFSSlideNum = saveTPSlideNum = g_currentSlide;
+var saveFSprevSlide = saveTPprevSlide = g_prevSlide;
+var g_slideType="ie";
+var appVer = navigator.appVersion;
+var msie = appVer.indexOf( "MSIE " ) + appVer.indexOf( "Internet Explorer " );
+var isnav = ( navigator.appName.indexOf( "Netscape" ) >= 0 );
+var msieWin31 = (appVer.indexOf( "Windows 3.1" ) > 0);
+var ver = 0;
+var g_done = 0;
+var g_prevotlobjidx = 0;
+var g_ShowFSDefault = 0;
+var g_lastVisibleSld = 1;
+var g_allHidden = false;
+function IsIE() {
+	return (msie >= 0 );
+}
+
+function IsNav() {
+	return (isnav);
+}
+var msiePos = appVer.indexOf( "MSIE " );
+var inexPos = appVer.indexOf( "Internet Explorer " );
+if ( msiePos >= 0 )
+  ver = parseFloat( appVer.substring( msiePos+5, appVer.indexOf ( ";", msiePos ) ) );
+else if( inexPos >= 0 )
+  ver=parseFloat( appVer.substring( inexPos+18, appVer.indexOf(";",inexPos) ) )
+else
+  ver = parseInt( appVer );
+
+//var g_supportsPPTHTML = 0; //!msieWin31 && ( ( msie >= 0 && ver >= 3.02 ) || ( msie < 0 && ver >= 3 ) );
+
+function GetCurrentSlideNum()
+{   
+  obj = GetHrefObj( g_currentSlide );
+  if ( GetHrefObj( g_currentSlide ).m_origVisibility == 1 )
+    return obj.m_slideIdx;
+  else   
+    return g_currentSlide;
+}
+
+function GetNumSlides()
+{
+  if ( GetHrefObj( g_currentSlide ).m_origVisibility == 1 )
+    return NUM_VISIBLE_SLIDES;
+  else
+    return g_docTable.length;
+}
+
+function GetHrefObj( slideIdx )
+{ return g_docTable[slideIdx - 1];
+}
+
+function GetSlideNum( slideHref )
+{
+  for (ii=0; ii<g_docTable.length; ii++) {
+    if ( g_docTable[ii].m_slideHref == slideHref )
+      return ii+1;
+  }
+  return 1;
+}
+
+function GoToNextSld()
+{   
+  targetIdx = g_currentSlide + 1;
+  if ( GetHrefObj( targetIdx-1 ).m_origVisibility == 0 ) {
+    if ( targetIdx<=g_docTable.length ) {
+      obj = GetHrefObj( targetIdx );
+      obj.m_visibility = 1;
+      GoToSld( obj.m_slideHref );
+    }
+  }
+  else {
+    obj = GetHrefObj( targetIdx );
+    while ( obj && ( obj.m_origVisibility == 0 ) && ( targetIdx<=g_docTable.length ) )
+      obj = GetHrefObj( targetIdx++ );
+    if( obj && obj.m_origVisibility )
+      GoToSld( obj.m_slideHref );
+  }
+}
+
+function GoToPrevSld()
+{
+  targetIdx = g_currentSlide - 1;
+  if ( targetIdx > 0 ) {
+    obj = GetHrefObj( targetIdx );
+    while ( ( obj.m_visibility == 0 ) && ( targetIdx>0 ) )
+      obj = GetHrefObj( targetIdx-- );
+    GoToSld( obj.m_slideHref );
+  }
+}
+
+function GoToLast()
+{
+  targetIdx = g_docTable.length;
+  if ( targetIdx != g_currentSlide )
+    GoToSld( GetHrefObj( targetIdx ).m_slideHref );
+}
+
+function GoToFirst()
+{ GoToSld( GetHrefObj(1).m_slideHref );
+}
+
+function highlite() {
+	if ( IsFullScrMode() )
+		return;
+	index = GetCurrentSlideNum();
+	if ( !frames[MAIN_FRAME].frames[OUTLINE_FRAME] )
+		return;
+	if ( msie < 0 ) {
+		if ( g_prevotlobjidx != 0 ) {
+			eval( "otlobj = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.LAYERID" + g_prevotlobjidx );
+			otlobj.hidden = true;
+		}
+		else
+			index = GetCurrentSlideNum();
+		eval( "otlobj = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.LAYERID" + index );
+		otlobj.hidden = false;
+	
+		g_prevotlobjidx = index;
+		
+		return;
+	}
+	if ( !g_showoutline )
+		return;
+		
+		backclr = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.body.bgColor;
+		textclr = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.body.text;
+	if ( g_prevotlobjidx != 0 ) {
+		eval( "otlobj = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.all.p" + g_prevotlobjidx );
+		otlobj.style.backgroundColor = backclr;
+		otlobj.style.color = textclr;
+		otlobj.all.AREF.style.color = textclr;
+	}
+	else
+		index = GetCurrentSlideNum();
+	eval( "otlobj = frames[MAIN_FRAME].frames[OUTLINE_FRAME].document.all.p" + index );
+	otlobj.style.backgroundColor = textclr;
+	otlobj.style.color = backclr;
+	otlobj.all.AREF.style.color = backclr;
+	g_prevotlobjidx = index;
+}
+
+function ChangeFrame( frame, href )
+{
+if ( IsFramesMode() ) {
+  if ( NAVBAR_FRAME == frame || OUTLINE_NAVBAR_FRAME ==  frame ) {
+	    frames[frame].location.replace(href);
+  }
+  else if( ! ( ( OUTLINE_FRAME == frame && !g_showoutline)  || (NOTES_FRAME == frame && !g_shownotes ) ) ){
+	    frames[MAIN_FRAME].frames[frame].location.href = href;
+  }
+ }
+ else {
+ 	if ( frame == NAVBAR_FRAME || frame == SLIDE_FRAME ) {
+ 	  if( frame == NAVBAR_FRAME ) {
+ 	  	 href = FS_NAVBAR_HREF;
+ 	  	
+ 	  }	    
+ 	  if( frame == NAVBAR_FRAME ) 
+	      window.frames[frame].location.replace(href);
+	 else
+	      window.frames[frame].location.href = href;
+ 	}
+ }
+  
+}
+
+function shutEventPropagation() {
+	if ( IsNav() )
+		return;
+		
+	var slideFrame;
+	if ( IsFramesMode() )
+		slideFrame = frames[MAIN_FRAME].frames[SLIDE_FRAME];
+	else
+		slideFrame = window.frames[SLIDE_FRAME];
+	if ( slideFrame.event ) 
+		slideFrame.event.cancelBubble=true;
+}
+				
+function GoToSld( slideHref )
+{
+  shutEventPropagation();
+  if ( slideHref != GetHrefObj( g_currentSlide ).m_slideHref || g_slideType != GetHrefObj( g_currentSlide ).type) {
+    g_prevSlide = g_currentSlide;
+    g_currentSlide = GetSlideNum( slideHref );
+	g_slideType = GetHrefObj( g_currentSlide ).type;
+    obj = GetHrefObj( g_currentSlide );
+    obj.m_visibility = 1;
+    ChangeFrame( SLIDE_FRAME, slideHref );
+    if( !SIMPLE_FRAMESET )
+      ChangeFrame( NOTES_FRAME, obj.m_notesHref );
+    ChangeFrame( NAVBAR_FRAME, NAVBAR_HREF );
+	    
+  }
+}
+
+function PrevSldViewed()
+{ GoToSld( GetHrefObj( g_prevSlide ).m_slideHref );
+}
+
+function NoHref() {}
+
+function ExpandOutline( )
+{ 
+ g_outline_href = OUTLINE_EXPAND_HREF;
+ ChangeFrame( OUTLINE_FRAME, OUTLINE_EXPAND_HREF );
+ frames[OUTLINE_NAVBAR_FRAME].location.replace( OUTLINE_NAVBAR_HREF);
+}
+
+function CollapseOutline()
+{ 
+ g_outline_href = OUTLINE_COLLAPSE_HREF;
+ ChangeFrame( OUTLINE_FRAME, OUTLINE_COLLAPSE_HREF );
+ frames[OUTLINE_NAVBAR_FRAME].location.replace( OUTLINE_NAVBAR_HREF);
+ }
+
+function SlideUpdated( id )
+{
+  if ( id != GetHrefObj( g_currentSlide ).m_slideHref )  {
+    g_prevSlide = g_currentSlide;
+    g_currentSlide = GetSlideNum( id );
+    obj = GetHrefObj( g_currentSlide );
+    if( !SIMPLE_FRAMESET )
+      ChangeFrame( NOTES_FRAME, obj.m_notesHref );
+    ChangeFrame( NAVBAR_FRAME, NAVBAR_HREF );
+  }
+}
+
+function hrefList( slideHref, notesHref, visible, slideIdx, type )
+{
+  this.m_slideHref  = slideHref;
+  this.m_notesHref  = notesHref;
+  this.m_navbarHref = NAVBAR_HREF;
+  this.m_origVisibility = visible;
+  this.m_visibility = visible;
+  this.m_slideIdx = slideIdx;
+  this.type = type;
+}
+
+function IsFullScrMode() {
+	return g_fullscrMode;
+}
+
+
+function IsFramesMode() {
+	return (1 - g_fullscrMode);
+}
+
+function SldUpdated( id )
+{
+  if ( ( id != GetHrefObj( g_currentSlide ).m_slideHref )  || ( g_currentSlide == g_lastVisibleSld ) ){
+    g_prevSlide = g_currentSlide;
+    g_currentSlide = GetSlideNum( id );
+    obj = GetHrefObj( g_currentSlide );
+    if( !SIMPLE_FRAMESET )
+      ChangeFrame( NOTES_FRAME, obj.m_notesHref );
+    ChangeFrame( NAVBAR_FRAME, NAVBAR_HREF );
+  }
+}
+
+function ToggleOutline() {
+	g_showoutline = 1 - g_showoutline;
+	writeMyFrame();
+}
+
+function ShowHideNotes() {
+	g_shownotes = 1 - g_shownotes;
+	writeMyFrame();
+}
+
+function writeMyFrame() {
+		SetFSMode(0);
+		obj = frames[MAIN_FRAME];
+		
+		var curslide = g_baseURL + "/" +  GetHrefObj( g_currentSlide ).m_slideHref;
+		var curnotes = g_baseURL + "/" +  GetHrefObj( g_currentSlide ).m_notesHref;
+		var otlhref = g_baseURL + "/" +  g_outline_href;
+		if ( msie < 0 ) {			
+		if ( ! g_showoutline && g_shownotes ) {
+			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
+				<frameset rows=\"*,20%\" id=\"frameset2\" > \
+				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
+				<frame src=\"' + curnotes + '\" name=PPTNts marginheight=0 marginwidth=0> \
+				</frameset> </html>' );
+		}
+		else if( g_showoutline && g_shownotes  ){
+			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
+				<frameset cols=\"20%,*\" id=\"frameset1\"> \
+				<frame src=\"' + otlhref + '\" name=PPTOtl> \
+				<frameset rows=\"*,20%\" id=\"frameset2\" > \
+				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
+				<frame src=\"' + curnotes + '\" name=PPTNts marginheight=0 marginwidth=0> \
+				</frameset> </frameset></html>' );
+		}		
+		else if ( !g_shownotes && !g_showoutline ) {
+			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
+				<frameset rows="*,0" frameborder=0 > \
+				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
+				</frameset> </html>' );
+		}
+		else if( !g_shownotes  && g_showoutline ) {
+			obj.document.write( '<HTML><HEAD><SCRIPT language=JavaScript src=' + g_baseURL + '/script.js></SCRIPT><SCRIPT> base = parent; <\/SCRIPT><\/HEAD> \
+				<frameset cols=\"20%,*\" id=\"frameset1\"> \
+				<frame src=\"' + otlhref + '\" name=PPTOtl> \
+				<frame src=\"' + curslide + '\" name=PPTSld marginheight=0 marginwidth=0> \
+				</frameset></html>' );
+		}
+		obj.document.close();
+		}
+		else {
+			if ( g_showoutline ) {
+				obj.PPTHorizAdjust.cols = "20%,*";
+				obj.PPTOtl.location.reload();
+			}
+			else {
+				obj.PPTHorizAdjust.cols = "0,*";
+			}
+			if ( g_shownotes ) {
+				obj.PPTVertAdjust.rows = "*,20%";
+				obj.PPTNts.location.href = curnotes;
+			}
+			else {
+				obj.PPTVertAdjust.rows = "*,0";
+			}
+		}
+		ChangeFrame( OUTLINE_NAVBAR_FRAME, OUTLINE_NAVBAR_HREF );
+}
+
+function FullScreen() {
+	g_done = 0;
+
+	
+	SetFSMode(1);
+	if ( msie >= 0 )
+		FSWin = window.open( g_baseURL + "/" + "fullscreen.htm", null, "fullscreen=yes");
+	else {
+		var height = screen.availHeight;
+		if ( window.navigator.platform.indexOf( "Mac" ) >= 0 ) {
+			height -= 30;
+		}
+		FSWin = window.open( g_baseURL + "/" + "fullscreen.htm", "null", "height="+ height + ",width=" + screen.availWidth + ",screenX=0,screenY=0");
+	}
+}
+
+function SetFSMode( i ) {
+
+}
+
+function Slide( i ) {
+	SetFSMode(0);
+	GoToSld(GetHrefObj(i).m_slideHref);
+}
+
+function TP_GoToNextSld() {
+	SetFSMode(0);
+	GoToNextSld();
+}
+
+function TP_GoToPrevSld() {
+	SetFSMode(0);
+	GoToPrevSld();
+}
+
+function CloseFullScreen() {
+	g_done = 0;	
+	
+	if ( IsNav() ){
+		if ( self.opener )
+			opener.FSWin = null;
+	}
+	window.close();
+}
+
+function slidenum(i) {
+	var slidename = "slide";
+	if ( i < 10 )
+		return ( slidename + "000" + i);
+	else if ( i < 100 )
+		return ( slidename + "00" + i );
+	else if ( i < 1000 ) 
+		return (slidename + "0" + i );
+	else
+		return (slidename + i );
+}
+function UpdateLastVisibleSlide( index ) {
+	if ( g_lastVisibleSld < index ) 
+		g_lastVisibleSld = index;
+}
+
+function jpegArray( numSlides ) {
+count_hidden = 0;
+	g_docTable = new Array();
+  for( i=0; i<numSlides; i++ ) {
+    j = 2 * numSlides + i + 1;
+    var str = slidenum( j ) +".htm";
+	if( g_notesTable[i] == 1 )
+		g_docTable[i] = new hrefList( str, slidenum(i+1 ) + "_notes_pane.htm", g_hiddenSlide[i], i+1-count_hidden, "jpeg" );
+	else
+		g_docTable[i] = new hrefList( str, BLANK_NOTES_HREF, g_hiddenSlide[i], i+1-count_hidden, "jpeg" );
+    if ( !g_hiddenSlide[i] ) count_hidden++;
+    else UpdateLastVisibleSlide( i+1 );
+  }
+}
+
+function ieArray( numSlides ) {
+count_hidden = 0;
+	g_docTable = new Array();
+  for( i=0; i<numSlides; i++ ) {
+    var str = slidenum(i+1) +".htm";
+	if( g_notesTable[i] == 1 )
+		g_docTable[i] = new hrefList( str, slidenum( i+1 ) + "_notes_pane.htm", g_hiddenSlide[i], i+1-count_hidden, "ie" );
+	else
+		g_docTable[i] = new hrefList( str, BLANK_NOTES_HREF, g_hiddenSlide[i], i+1-count_hidden, "ie" );
+    if ( !g_hiddenSlide[i] ) count_hidden++;
+    else UpdateLastVisibleSlide( i+1 );
+  }
+}
+
+function navArray( numSlides ) {
+count_hidden = 0;
+	g_docTable = new Array();
+  for( i=0; i<numSlides; i++ ) {
+    j = numSlides + i + 1;
+    var str = slidenum( j ) +".htm";
+	if( g_notesTable[i] == 1 )
+		g_docTable[i] = new hrefList( str, slidenum(i+1 ) + "_notes_pane.htm", g_hiddenSlide[i], i+1-count_hidden, "nav" );
+	else
+		g_docTable[i] = new hrefList( str, BLANK_NOTES_HREF, g_hiddenSlide[i], i+1-count_hidden, "nav" );
+    if ( !g_hiddenSlide[i] ) count_hidden++;
+    else UpdateLastVisibleSlide( i+1 );
+  }
+}
+
+function LoadHTMLVersion() {
+  var os = window.navigator.platform.indexOf("Mac");
+  if ( (msie || isnav ) && ( (os < 0 && ver >= 4 ) || ( os >= 0 && ver >= 5 ) || (os >=0 && msie < 0 && ver >= 4 ) )  ){
+	if ( msie >= 0 )  {
+		if ( isIEFiles > 0 )
+			ieArray( 18 );
+		else if ( isFLATFiles > 0 ){
+			/*if ( IsFramesMode() )
+				StatusPlay("This presentation is optimized for use with older versions of your browser. Since you are using a more recent version of Microsoft Internet Explorer or Netscape Navigator, consider optimizing this presentation to take advantage of your current version's advanced capabilities."); */
+			jpegArray( 18 );
+		}
+		else
+			window.location.replace(  "webqtl_demo2_part1.ppt_files/error.htm" );
+	}
+	else {
+		if ( isNAVFiles > 0 && ver < 5) 
+			navArray( 18 );
+		else if ( isFLATFiles > 0 ) {
+			/* if ( IsFramesMode() )
+				StatusPlay("This presentation is optimized for use with older versions of your browser. Since you are using a more recent version of Microsoft Internet Explorer or Netscape Navigator, consider optimizing this presentation to take advantage of your current version's advanced capabilities."); */
+			jpegArray( 18 );
+		}
+		else
+			window.location.replace(  "webqtl_demo2_part1.ppt_files/error.htm" );
+	}
+}
+else {
+	/*
+	if ( IsFramesMode() && !isWebTV() )
+		StatusPlay("This presentation contains content that your browser may not be able to show properly. This presentation was optimized for more recent versions of Microsoft Internet Explorer or Netscape Navigator.");
+	*/
+	if ( isFLATFiles <= 0 ) {
+	/*	if ( IsFramesMode() )
+			window.alert("This presentation contains content that your browser may not be able to display properly. This presentation is optimized for more recent versions of Microsoft Internet Explorer or Netscape Navigator." );
+	*/
+		window.location.replace(  "webqtl_demo2_part1.ppt_files/error.htm" );
+	}		
+	/*
+	else if ( IsFramesMode()  && !isWebTV() )
+		StatusPlay( "This presentation contains content that your browser may not be able to show properly. This presentation was optimized for more recent versions of Microsoft Internet Explorer or Netscape Navigator." ); 
+	*/	
+	jpegArray ( 18 );
+  }
+  
+}
+
+function isWebTV() {
+	if ( window.navigator.appName.indexOf( 'WebTV' ) >= 0 )
+		return true;
+	return false;
+}
+		
+var count;
+var statusText;
+var statusfirst = 0;
+ function display50( text ) 
+{
+	len = text.length;
+	if ( len < 50 && count < 2) {
+		window.status = text;
+		window.setTimeout( "repeat()", 300 );
+	}	
+	else {
+		var period = 200;
+		window.status = text;
+		newtext = text.substring( 1, len );
+		if ( statusfirst ) {
+			statusfirst = 0;
+			period = 2000;
+		}	
+		window.setTimeout( "display50( newtext )", period );
+	}
+}
+function repeat(  ) {
+	count++;		
+	statusfirst = 1;
+	display50( statusText );
+}
+
+function StatusPlay( text ) {
+	count = 0;
+	statusText = text;
+	repeat( );		
+ }
+function makeSlide( i, notes, visible ) {
+	g_notesTable[i] = notes;
+	g_hiddenSlide[i] = visible;
+}	
+
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001.htm
new file mode 100755
index 00000000..d17c2490
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: GeneNetwork and WebQTL:">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0001.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:.88%;left:3.31%;width:84.37%;height:9.89%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-277 0 -1";mso-margin-left-alt:232;
+mso-text-indent-alt:0;position:absolute;top:0%;left:1.25%;width:97.95%;
+height:100.0%'><span style='font-size:105%'><i>GeneNetwork and WebQTL:</i></span><span
+style='font-size:68%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</div>
+<div style='position:absolute;top:24.02%;left:5.82%;width:69.0%;height:50.7%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='position:absolute;top:0%;left:2.87%;width:97.12%;
+height:71.08%'>
+<div style='mso-line-spacing:"-256 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
+56;position:absolute;top:0%;left:0%;width:92.68%;height:53.43%'><span
+style='position:absolute;top:0%;left:0%;width:100.0%'><span style='mso-special-format:
+nobullet;display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:
+99%'>l</span><span style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Part
+1: How to study </span></span><span style='position:absolute;top:31.19%;
+left:8.1%;width:91.89%'><span style='font-size:106%;color:#E9EB5D;mso-color-index:
+3'>expression variation and </span></span><span style='position:absolute;
+top:61.46%;left:8.1%;width:91.89%'><span style='font-size:106%;color:#E9EB5D;
+mso-color-index:3'>covariation (slides 2&#8211;16)<br>
+</span></span></div>
+<div style='mso-line-spacing:"-256 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
+56;position:absolute;top:63.23%;left:0%;width:100.0%;height:36.76%'><span
+style='position:absolute;top:0%;left:0%;width:100.0%'><span style='mso-special-format:
+nobullet;display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:
+99%'>l</span><span style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Part
+2. Discovering upstream </span></span><span style='position:absolute;
+top:45.33%;left:7.5%;width:89.32%'><span style='font-size:106%;color:#E9EB5D;
+mso-color-index:3'>modulators (slides 17&#8211;30)</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></span></div>
+</div>
+</div>
+<img border=0 src="slide0001_image001.png" style='position:absolute;top:21.9%;
+left:74.56%;width:23.57%;height:64.31%'>
+<div class=O style='position:absolute;top:79.32%;left:75.89%;width:10.46%;
+height:14.48%'>
+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:0%;left:0%;width:100.0%;height:42.68%'><span
+style='font-family:"Arial Rounded MT Bold";font-size:233%;color:#6E6E6E'>RNA</span><span
+style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
+display:none'><br>
+</span></div>
+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17;position:absolute;top:46.34%;left:0%;width:82.27%;height:54.87%'><span
+style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+<div class=O style='position:absolute;top:66.43%;left:3.44%;width:80.66%;
+height:11.48%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'><i>PowerPoint �Normal view� has notes that may be </i></span></span><span
+style='position:absolute;top:50.76%;left:0%;width:86.53%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'><i>useful companions to these slides.</i></span><span style='font-family:
+"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:3;mso-special-format:
+lastCR;display:none'><br>
+</span></span></div>
+<div class=O style='position:absolute;top:10.95%;left:6.35%;width:55.23%;
+height:7.42%'><span style='font-family:"Gill Sans";font-size:283%;color:#E9EB5D'><i>a
+PowerPoint Presentation</i></span><span style='font-family:"Gill Sans";
+font-size:317%;color:#E9EB5D;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+<div class=O style='position:absolute;top:92.4%;left:75.23%;width:26.49%;
+height:3.88%'><span style='font-family:Helvetica;font-size:167%;color:#E9EB5D'><i>RWW
+07.23.2005</i></span></div>
+<div class=O style='position:absolute;top:81.97%;left:3.44%;width:77.21%;
+height:11.48%'>
+<div style='position:absolute;top:0%;left:0%;width:88.16%;height:49.23%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'><i>You can also download this PowerPoint at<br>
+</i></span></div>
+<div style='position:absolute;top:50.76%;left:0%;width:100.0%;height:49.23%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'><i>ftp://atlas.utmem.edu/public/webqtl_demo2.ppt </i></span><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Welcome to a short
+  demonstration of the GeneNetwork and its WebQTL module. Please adjust the
+  size of the windows on your monitor so that you can see part of this page, as
+  well as GeneNetwork windows. WebQTL produces a large number of new windows,
+  so you may need to modify your browser preferences to permit pop-ups. In this
+  demonstration, we explore one important transcript expressed in the brain:
+  the amyloid beta precursor protein messenger RNA. A protein product of this
+  mRNA, the APP protein, is associated with Alzheimer�s disease.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>My thanks to Dr. Robert
+  F. Clark and Wenli Cai for testing this PowerPoint demonstration and making
+  many improvements.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>(Initial version of June
+  2003 by Rob Williams. Edits July 13, 2005 by RW and RFC. Edit July 14, 2005
+  by WC. Final edits by RF Clark, July 22, 2005.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_image001.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_image001.png
new file mode 100755
index 00000000..a1cb20e4
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_image001.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_notes_pane.htm
new file mode 100755
index 00000000..7c670210
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0001_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Welcome to a short
+  demonstration of the GeneNetwork and its WebQTL module. Please adjust the
+  size of the windows on your monitor so that you can see part of this page, as
+  well as GeneNetwork windows. WebQTL produces a large number of new windows,
+  so you may need to modify your browser preferences to permit pop-ups. In this
+  demonstration, we explore one important transcript expressed in the brain:
+  the amyloid beta precursor protein messenger RNA. A protein product of this
+  mRNA, the APP protein, is associated with Alzheimer�s disease.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>My thanks to Dr. Robert
+  F. Clark and Wenli Cai for testing this PowerPoint demonstration and making
+  many improvements.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>(Initial version of June
+  2003 by Rob Williams. Edits July 13, 2005 by RW and RFC. Edit July 14, 2005
+  by WC. Final edits by RF Clark, July 22, 2005.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002.htm
new file mode 100755
index 00000000..8627e129
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0002.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
+border=0 src="slide0002_image002.png" style='position:absolute;top:8.3%;
+left:.39%;width:86.35%;height:86.21%'><img border=0 src="slide0002_image003.png"
+style='position:absolute;top:34.27%;left:59.07%;width:12.18%;height:14.48%'>
+<div style='position:absolute;top:46.64%;left:85.43%;width:16.29%;height:12.01%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:2.94%;left:5.69%;width:93.49%;
+height:91.17%'>
+<div style='mso-line-spacing:"-224 0 0";position:absolute;top:0%;left:0%;
+width:91.3%;height:51.61%'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>Choose<br>
+</span></div>
+<div style='mso-line-spacing:"-224 0 0";position:absolute;top:48.38%;
+left:0%;width:100.0%;height:51.61%'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'>database</span></div>
+</div>
+</div>
+<div style='position:absolute;top:62.19%;left:86.62%;width:21.05%;height:12.72%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:6.94%;left:5.03%;width:89.93%;
+height:86.11%'>
+<div style='position:absolute;top:0%;left:0%;width:100.0%;height:51.61%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'>Enter<br>
+</span></div>
+<div style='mso-line-spacing:"-224 0 0";position:absolute;top:48.38%;
+left:0%;width:100.0%;height:51.61%'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'><i>APP</i></span><span
+style='font-family:"Gill Sans";font-size:250%;color:#E9EB5D;mso-color-index:
+3;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</div>
+</div>
+<div style='position:absolute;top:77.73%;left:85.96%;width:12.58%;height:12.72%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:6.94%;left:8.42%;width:91.57%;
+height:86.11%'>
+<div style='position:absolute;top:0%;left:0%;width:91.95%;height:51.61%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'>Select<br>
+</span></div>
+<div style='mso-line-spacing:"-224 0 0";position:absolute;top:48.38%;
+left:0%;width:100.0%;height:51.61%'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'>search</span></div>
+</div>
+</div>
+<div style='position:absolute;top:.88%;left:0%;width:111.92%;height:9.18%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div style='position:absolute;top:0%;left:.94%;width:99.05%;height:80.76%'>
+<div class=B1 style='mso-margin-left-alt:644;mso-text-indent-alt:420'></div>
+<div class=B2 style='mso-margin-left-alt:937;mso-text-indent-alt:716'></div>
+<div class=B3 style='mso-margin-left-alt:1232;mso-text-indent-alt:1009'></div>
+<div class=B4 style='mso-margin-left-alt:1544;mso-text-indent-alt:1304'></div>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:0;position:absolute;top:0%;left:0%;width:100.0%;height:
+100.0%'><span style='mso-special-format:nobullet;display:none;color:#FBFDB8;
+font-family:"Monotype Sorts";font-size:99%'>l</span><span style='font-size:
+106%;color:#E9EB5D;mso-color-index:3'>PART 1: How to study variation and
+covariation</span></div>
+</div>
+</div>
+<div style='position:absolute;top:15.54%;left:85.82%;width:16.15%;height:22.43%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='mso-line-spacing:"-224 0 0";position:absolute;top:1.57%;
+left:6.55%;width:94.26%;height:94.48%'><span style='position:absolute;
+top:0%;left:0%;width:91.3%'><span style='font-family:"Gill Sans";font-size:
+217%;color:#E9EB5D;mso-color-index:3'>Choose<span style="mso-spacerun:
+yes">&nbsp; </span></span></span><span style='position:absolute;top:25.0%;
+left:0%;width:91.3%'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>species, </span></span><span style='position:
+absolute;top:49.16%;left:0%;width:91.3%'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'>group, </span></span><span
+style='position:absolute;top:73.33%;left:0%;width:100.0%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'>and type</span></span></div>
+</div>
+<img border=0 src="slide0002_image004.png" style='position:absolute;top:71.37%;
+left:48.87%;width:12.58%;height:13.78%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Please link to the web
+  site:<span style="mso-spacerun: yes">&nbsp; </span>http://www.genenetwork.org</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>To begin a search you
+  make choices about what species, group, and database to explore.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>For this demonstration
+  enter APP as above and click on the SEARCH button. Make sure that the DEFAULT
+  SETTINGS are species = Mouse, Group = BXD, Type = Whole Brain, and Database =
+  INIA BRAIN mRNA M430 (Apr05) PDNN.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>1. The GeneNetwork and
+  WebQTL are often used to work with public data sets. However, it is possible
+  to enter and analyze your own data for specific genetic reference populations
+  such as the BXD genetic reference population of mice or the HXB strains of rat.
+  Entering your own data is a more advanced topic, but if you click on the HOME
+  pop-down menu (upper left), you will see �Enter Trait Data� that will explain
+  the process.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>2.</font><font
+  face=Helvetica size=3> For help on advanced searching methods read the left
+  side of the page (INTRODUCTION).<span style="mso-spacerun: yes">&nbsp;
+  </span>If you make a search term too complex, you may get no hits (try
+  entering �amyloid beta� for example). If you make it too simple, you may also
+  get too many.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>3.</font><font
+  face=Helvetica size=3> Use the asterisk * as a wildcard. For example, to find
+  all <i>Hoxb</i> transcripts, search for Hoxb*.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>4.</font><font
+  face=Helvetica size=3> In some cases you can also research for transcripts
+  and genes using special search strings such as �</font><font face=Geneva
+  size=3>Mb = (Chr1, 100 102)� to find all genes on Chromosome 1 between 98 and
+  104 megabases (don�t actually use the quotes). Details are described at </font><font
+  face=Verdana size=3>http://www.genenetwork.org/searchHelp.html</font><font
+  face=Geneva size=3>.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>5.<span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>These INFO buttons provide
+  links to data about the different data types. Try them.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>6.<span
+  style="mso-spacerun: yes">&nbsp; </span>The SET TO DEFAULT button is used to
+  change the database default setting to match your typical search categories.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image002.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image002.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image003.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image003.png
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image003.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image004.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image004.png
new file mode 100755
index 00000000..a4f088b8
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_image004.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_notes_pane.htm
new file mode 100755
index 00000000..5f7740c5
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0002_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Please link to the web
+  site:<span style="mso-spacerun: yes">&nbsp; </span>http://www.genenetwork.org</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>To begin a search you
+  make choices about what species, group, and database to explore.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>For this demonstration
+  enter APP as above and click on the SEARCH button. Make sure that the DEFAULT
+  SETTINGS are species = Mouse, Group = BXD, Type = Whole Brain, and Database =
+  INIA BRAIN mRNA M430 (Apr05) PDNN.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>1. The GeneNetwork and
+  WebQTL are often used to work with public data sets. However, it is possible
+  to enter and analyze your own data for specific genetic reference populations
+  such as the BXD genetic reference population of mice or the HXB strains of rat.
+  Entering your own data is a more advanced topic, but if you click on the HOME
+  pop-down menu (upper left), you will see �Enter Trait Data� that will explain
+  the process.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>2.</font><font
+  face=Helvetica size=2> For help on advanced searching methods read the left
+  side of the page (INTRODUCTION).<span style="mso-spacerun: yes">&nbsp;
+  </span>If you make a search term too complex, you may get no hits (try
+  entering �amyloid beta� for example). If you make it too simple, you may also
+  get too many.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>3.</font><font
+  face=Helvetica size=2> Use the asterisk * as a wildcard. For example, to find
+  all <i>Hoxb</i> transcripts, search for Hoxb*.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>4.</font><font
+  face=Helvetica size=2> In some cases you can also research for transcripts
+  and genes using special search strings such as �</font><font face=Geneva
+  color="#222222" size=2>Mb = (Chr1, 100 102)� to find all genes on Chromosome
+  1 between 98 and 104 megabases (don�t actually use the quotes). Details are
+  described at </font><font face=Verdana color=black size=2>http://www.genenetwork.org/searchHelp.html</font><font
+  face=Geneva color="#222222" size=2>.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>5.<span
+  style="mso-spacerun: yes">&nbsp;&nbsp; </span>These INFO buttons provide
+  links to data about the different data types. Try them.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>6.<span
+  style="mso-spacerun: yes">&nbsp; </span>The SET TO DEFAULT button is used to
+  change the database default setting to match your typical search categories.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003.htm
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index 00000000..5507bd68
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0003.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
+border=0 src="slide0003_image005.png" style='position:absolute;top:34.27%;
+left:59.07%;width:12.18%;height:14.48%'>
+<div style='position:absolute;top:.88%;left:.79%;width:105.69%;height:9.18%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div style='position:absolute;top:0%;left:1.0%;width:98.99%;height:80.76%'>
+<div class=B1 style='mso-margin-left-alt:644;mso-text-indent-alt:420'></div>
+<div class=B2 style='mso-margin-left-alt:937;mso-text-indent-alt:716'></div>
+<div class=B3 style='mso-margin-left-alt:1232;mso-text-indent-alt:1009'></div>
+<div class=B4 style='mso-margin-left-alt:1544;mso-text-indent-alt:1304'></div>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:0;position:absolute;top:0%;left:0%;width:100.0%;height:
+100.0%'><span style='mso-special-format:nobullet;display:none;color:#FBFDB8;
+font-family:"Monotype Sorts";font-size:99%'>l</span><span style='font-size:
+106%;color:#E9EB5D;mso-color-index:3'>Please also use the Glossary, FAQ, and
+News</span></div>
+</div>
+</div>
+<img border=0 src="slide0003_image006.png" style='position:absolute;top:10.07%;
+left:1.72%;width:69.66%;height:60.95%'><img border=0
+src="slide0003_image008.png" style='position:absolute;top:9.18%;left:18.8%;
+width:12.58%;height:13.78%'><img border=0 src="slide0003_image009.png"
+style='position:absolute;top:49.11%;left:38.27%;width:60.0%;height:48.58%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>SHORT DETOUR to the HELP
+  menu. If you are new to the GeneNetwork, you may find it helpful to review
+  the The Glossary and FAQ pages shown above. We are in the process of making
+  �live� demos for some of the key modules in the GeneNetwork. Check the NEWS
+  every month or two to find out about new features.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_image005.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_image005.png
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_image008.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_image009.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_image009.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_notes_pane.htm
new file mode 100755
index 00000000..b8742fdc
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0003_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>SHORT DETOUR to the HELP
+  menu. If you are new to the GeneNetwork, you may find it helpful to review
+  the The Glossary and FAQ pages shown above. We are in the process of making
+  �live� demos for some of the key modules in the GeneNetwork. Check the NEWS
+  every month or two to find out about new features.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004.htm
new file mode 100755
index 00000000..ab2d96f6
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Search results">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0004.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
+border=0 src="slide0004_image010.png" style='position:absolute;top:9.18%;
+left:3.31%;width:68.74%;height:90.81%'><img border=0
+src="slide0004_image012.png" style='position:absolute;top:63.78%;left:63.57%;
+width:14.7%;height:6.53%'>
+<div class=O style='position:absolute;top:45.93%;left:80.13%;width:18.94%;
+height:47.17%'>
+<div style='mso-line-spacing:"-224 0 0";position:absolute;top:0%;left:0%;
+width:100.0%;height:44.94%'><span style='position:absolute;top:0%;left:0%;
+width:100.0%'><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
+mso-color-index:3'>Highlight </span></span><span style='position:absolute;
+top:24.16%;left:0%;width:100.0%'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'>this probe </span></span><span
+style='position:absolute;top:49.16%;left:0%;width:100.0%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'>set in red </span></span><span style='position:absolute;top:73.33%;
+left:0%;width:100.0%'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>and</span><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3;display:none'><i><br>
+</i></span></span></div>
+<div style='mso-line-spacing:"-224 0 0";position:absolute;top:43.82%;
+left:0%;width:100.0%;height:56.17%'><span style='position:absolute;top:0%;
+left:0%;width:100.0%'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>click. You </span></span><span
+style='position:absolute;top:20.0%;left:0%;width:100.0%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'>do NOT </span></span><span style='position:absolute;top:39.33%;left:0%;
+width:100.0%'><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
+mso-color-index:3'>have to </span></span><span style='position:absolute;
+top:59.33%;left:0%;width:100.0%'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'>select the </span></span><span
+style='position:absolute;top:78.66%;left:0%;width:100.0%'><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3'>checkbox</span><span style='font-family:"Gill Sans";font-size:250%;
+color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;display:none'><br>
+</span></span></div>
+</div>
+<div style='position:absolute;top:-4.41%;left:1.72%;width:84.63%;height:18.19%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='position:absolute;top:29.12%;left:1.4%;width:97.18%;
+height:42.71%'><span style='font-size:82%'>Search results</span><span
+style='mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+</div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>RESULTS OF THE APP
+  SEARCH.<span style="mso-spacerun: yes">&nbsp; </span>A search of the INIA
+  Brain database generates 18 matches, 10 of which are shown above. The
+  GeneNetwork will display several hundred matches in pages of 40 each. If a
+  search generates a larger numbers of hits, then you will need to refine
+  search terms.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>1. APP is a great
+  transcript to introduce you to the complexity and power of new array
+  platforms that often provide �alternative� expression estimates for single
+  genes. There are seven probe sets that target different parts of the APP
+  transcript. Which of the alternative measurements is most appropriate and
+  informative? Have a look at the FAQ page for more on this topic, but general
+  advice: 1. be skeptical and try to validate that the correct transcript and
+  gene is being measured; 2. check what part of the transcript is complementary
+  to the probes; 3. evaluate the performance of individual probes based on
+  expression level, signal-to-noise and other error terms such as the standard
+  deviation and error.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>2. In this particular
+  case we have highlighted and selected # 5 on this SEARCH RESULTS page. The
+  annotation for this probe set mentions that it targets the last three exons
+  and the 3� untranslated region (UTR) of the amyloid precursor protein (APP).<span
+  style="mso-spacerun: yes">&nbsp; </span>That is just what we want.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>3. Most probe sets have
+  not been annotated in as much detail as App. Refer tot the FAQ to learn how
+  to annotate probe sets yourself.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_image010.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_image010.png
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_notes_pane.htm
new file mode 100755
index 00000000..f7336dcc
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0004_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>RESULTS OF THE APP
+  SEARCH.<span style="mso-spacerun: yes">&nbsp; </span>A search of the INIA
+  Brain database generates 18 matches, 10 of which are shown above. The
+  GeneNetwork will display several hundred matches in pages of 40 each. If a
+  search generates a larger numbers of hits, then you will need to refine
+  search terms.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>1. APP is a great
+  transcript to introduce you to the complexity and power of new array
+  platforms that often provide �alternative� expression estimates for single
+  genes. There are seven probe sets that target different parts of the APP
+  transcript. Which of the alternative measurements is most appropriate and
+  informative? Have a look at the FAQ page for more on this topic, but general
+  advice: 1. be skeptical and try to validate that the correct transcript and
+  gene is being measured; 2. check what part of the transcript is complementary
+  to the probes; 3. evaluate the performance of individual probes based on
+  expression level, signal-to-noise and other error terms such as the standard
+  deviation and error.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. In this particular
+  case we have highlighted and selected # 5 on this SEARCH RESULTS page. The
+  annotation for this probe set mentions that it targets the last three exons
+  and the 3� untranslated region (UTR) of the amyloid precursor protein (APP).<span
+  style="mso-spacerun: yes">&nbsp; </span>That is just what we want.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>3. Most probe sets have
+  not been annotated in as much detail as App. Refer tot the FAQ to learn how
+  to annotate probe sets yourself.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005.htm
new file mode 100755
index 00000000..53f61532
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0005.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'><img
+border=0 src="slide0005_image013.png" style='position:absolute;top:8.83%;
+left:2.51%;width:77.48%;height:80.56%'>
+<div style='position:absolute;top:1.06%;left:0%;width:108.21%;height:8.3%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:56;position:absolute;top:0%;left:1.83%;width:98.16%;
+height:78.72%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'>First page of data: The
+Trait Data and Analysis Form</span><span style='font-size:106%;color:#E9EB5D;
+mso-color-index:3;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+<img border=0 src="slide0005_image014.png" style='position:absolute;top:34.98%;
+left:68.74%;width:16.42%;height:9.71%'>
+<div style='position:absolute;top:23.32%;left:84.76%;width:16.68%;height:34.09%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=O style='position:absolute;top:2.07%;left:6.34%;width:93.65%;
+height:95.33%'><span style='position:absolute;top:0%;left:0%;width:90.67%'><span
+style='font-size:200%;color:#E9EB5D'><i>Click </i></span></span><span
+style='position:absolute;top:16.3%;left:0%;width:90.67%'><span
+style='font-size:200%;color:#E9EB5D'><i>here<br>
+</i></span></span>
+<div style='position:absolute;top:33.15%;left:0%;width:100.0%;height:16.84%'><span
+style='font-size:200%;color:#E9EB5D'><i>to learn<br>
+</i></span></div>
+<div style='position:absolute;top:49.45%;left:0%;width:90.67%;height:16.84%'><span
+style='font-size:200%;color:#E9EB5D'><i>about<br>
+</i></span></div>
+<div style='position:absolute;top:66.3%;left:0%;width:90.67%;height:16.84%'><span
+style='font-size:200%;color:#E9EB5D'><i>data<br>
+</i></span></div>
+<div style='position:absolute;top:83.15%;left:0%;width:90.67%;height:16.84%'><span
+style='font-size:200%;color:#E9EB5D'><i>source</i></span></div>
+</div>
+</div>
+</div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>The Trait Data and
+  Analysis Form is the single most important page from the point of view of
+  working with GeneNetwork data. Please read the text carefully. Explore the
+  links, but do not close this page. We will need it many more times in this
+  demonstration.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>1. What is this
+  database? It is called INIA Brain mRNA M430 (Apr05) PDNN, but what does that
+  actually mean. How much of the brain was used? How were the animals
+  processed? Most of these types of questions can be answered by clicking on
+  the DATABASE link.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>2. Transcript/gene
+  LOCATION data is usually from the most recent assembly. You can VERIFY the
+  location of the probes and probe set using the two VERIFY buttons. VERIFY
+  UCSC performs a sequence alignment (BLAT analysis) of the probes to the most
+  recent assembly.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>3. The PROBE TOOL button
+  provides you with highly detailed information on the probe sequences used to
+  assemble the probe set. For example, in this case you can find out which
+  probes correspond to which of the three exons. You can also review the
+  performance of the individual probes. Please check the GLOSSARY for
+  additional details on probes.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>4. The identifiers (IDs)
+  provide links to other key resources.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_image013.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_image013.png
new file mode 100755
index 00000000..55769e36
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_image013.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_image014.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_image014.png
new file mode 100755
index 00000000..e49ba16e
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_image014.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_notes_pane.htm
new file mode 100755
index 00000000..fbe8c631
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0005_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>The Trait Data and
+  Analysis Form is the single most important page from the point of view of
+  working with GeneNetwork data. Please read the text carefully. Explore the
+  links, but do not close this page. We will need it many more times in this
+  demonstration.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>1. What is this
+  database? It is called INIA Brain mRNA M430 (Apr05) PDNN, but what does that
+  actually mean. How much of the brain was used? How were the animals
+  processed? Most of these types of questions can be answered by clicking on
+  the DATABASE link.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. Transcript/gene
+  LOCATION data is usually from the most recent assembly. You can VERIFY the
+  location of the probes and probe set using the two VERIFY buttons. VERIFY
+  UCSC performs a sequence alignment (BLAT analysis) of the probes to the most
+  recent assembly.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>3. The PROBE TOOL button
+  provides you with highly detailed information on the probe sequences used to
+  assemble the probe set. For example, in this case you can find out which
+  probes correspond to which of the three exons. You can also review the
+  performance of the individual probes. Please check the GLOSSARY for
+  additional details on probes.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>4. The identifiers (IDs)
+  provide links to other key resources.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006.htm
new file mode 100755
index 00000000..fa44d20c
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0006.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:-1.06%;left:0%;width:100.26%;height:10.07%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:56;position:absolute;top:0%;left:1.98%;width:96.82%;
+height:73.68%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Data sources: Metadata
+for each resource</span></div>
+</div>
+<img border=0 src="slide0006_image015.png" style='position:absolute;top:6.71%;
+left:3.31%;width:60.39%;height:92.22%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Most of the database
+  components and resources in The GeneNetwork are linked to metadata pages that
+  provide a human-readable summary of how, why, where, when, and with whom the
+  data were generated. Before you get too involved with a data set, it is
+  naturally important to read this information. While the data in The
+  GeneNetwork may be accessible and useful, that does not always mean that the
+  data is public domain and available for you to use in publication or for
+  profit purposes. If you want to know more about the data ownership and usage,
+  please read through the POLICIES pop-down menu items.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006_image015.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006_image015.png
new file mode 100755
index 00000000..ff7d776a
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006_image015.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006_notes_pane.htm
new file mode 100755
index 00000000..f29819ad
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0006_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Most of the database
+  components and resources in The GeneNetwork are linked to metadata pages that
+  provide a human-readable summary of how, why, where, when, and with whom the
+  data were generated. Before you get too involved with a data set, it is
+  naturally important to read this information. While the data in The
+  GeneNetwork may be accessible and useful, that does not always mean that the
+  data is public domain and available for you to use in publication or for
+  profit purposes. If you want to know more about the data ownership and usage,
+  please read through the POLICIES pop-down menu items.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007.htm
new file mode 100755
index 00000000..a30b21f1
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0007.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:-.35%;left:-.79%;width:109.13%;height:7.42%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:56;position:absolute;top:0%;left:1.82%;width:98.17%;
+height:88.09%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'>Expression estimates for </span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'> on the Trait Data form</span><span
+style='font-size:81%;color:#E9EB5D;mso-color-index:3'> </span></div>
+</div>
+<div style='position:absolute;top:81.09%;left:2.51%;width:110.46%;height:11.48%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=O style='position:absolute;top:7.69%;left:.83%;width:99.16%;
+height:84.61%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
+style='font-family:"Gill Sans";font-size:183%;color:#E9EB5D;mso-color-index:
+3'>Trait data for each strain with SE when known. For array data the scale is </span></span><span
+style='position:absolute;top:49.09%;left:0%;width:84.28%'><span
+style='font-family:"Gill Sans";font-size:183%;color:#E9EB5D;mso-color-index:
+3'>~ log base 2.<span style="mso-spacerun: yes">&nbsp;&nbsp; </span></span><span
+style='font-size:167%;color:#E9EB5D;mso-color-index:3'>F1 data = 16.723 =
+2^16.723 = 108,174</span></span></div>
+</div>
+<img border=0 src="slide0007_image016.png" style='position:absolute;top:7.77%;
+left:2.51%;width:51.65%;height:72.26%'><img border=0
+src="slide0007_image017.png" style='position:absolute;top:33.92%;left:57.88%;
+width:30.72%;height:13.42%'>
+<div style='position:absolute;top:47.7%;left:57.48%;width:36.29%;height:18.9%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=1)'>
+<div class=O style='position:absolute;top:3.73%;left:2.91%;width:97.08%;
+height:96.26%'><span style='position:absolute;top:0%;left:0%;width:96.24%'><span
+style='font-size:167%;color:#E9EB5D;mso-color-index:3'>These values can all </span></span><span
+style='position:absolute;top:25.24%;left:0%;width:93.98%'><span
+style='font-size:167%;color:#E9EB5D;mso-color-index:3'>be changed by the </span></span><span
+style='position:absolute;top:49.51%;left:0%;width:100.0%'><span
+style='font-size:167%;color:#E9EB5D;mso-color-index:3'>user. (Yes, there is a </span></span><span
+style='position:absolute;top:74.75%;left:0%;width:93.98%'><span
+style='font-size:167%;color:#E9EB5D;mso-color-index:3'>RESET)</span></span></div>
+</div>
+</div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>This slide shows you the
+  lower parts of the Trait Data and Analysis Form with the data for the first
+  set of BXD strains</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_image016.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_image016.png
new file mode 100755
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_image016.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_image017.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_image017.png
new file mode 100755
index 00000000..308c4df0
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_image017.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_notes_pane.htm
new file mode 100755
index 00000000..f5bc813e
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0007_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>This slide shows you the
+  lower parts of the Trait Data and Analysis Form with the data for the first
+  set of BXD strains</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008.htm
new file mode 100755
index 00000000..c0fa9166
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0008.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:.53%;left:.79%;width:98.54%;height:8.12%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:56;position:absolute;top:0%;left:2.01%;width:96.9%;
+height:91.3%'><span style='mso-special-format:nobullet;display:none;color:#FBFDB8;
+font-family:"Monotype Sorts";font-size:99%'>l</span><span style='font-size:
+106%;color:#E9EB5D;mso-color-index:3'>Critiquing the </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> data the Trait Data</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:74.38%;left:2.51%;width:110.86%;height:13.78%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=O style='position:absolute;top:6.41%;left:.83%;width:99.16%;
+height:88.46%'><span style='position:absolute;top:0%;left:0%;width:98.55%'><span
+style='font-family:"Gill Sans";font-size:150%;color:#E9EB5D;mso-color-index:
+3'>Use the BASIC STATISTICS button to evaluate the App data. You will find that
+App data </span></span><span style='position:absolute;top:31.88%;left:0%;
+width:100.0%'><span style='font-family:"Gill Sans";font-size:150%;color:#E9EB5D;
+mso-color-index:3'>from the different strains are not equally trustworthy. BXD8
+is an obvious outlier without </span></span><span style='position:absolute;
+top:63.76%;left:0%;width:93.85%'><span style='font-family:"Gill Sans";
+font-size:150%;color:#E9EB5D;mso-color-index:3'>replication (no error bar)</span><span
+style='font-size:150%;color:#E9EB5D;mso-color-index:3'>. BXD33 is also
+suspiciously low. BXD5 is noisy. </span><span style='font-family:"Gill Sans";
+font-size:150%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></span></div>
+</div>
+<img border=0 src="slide0008_image018.png" style='position:absolute;top:7.77%;
+left:2.11%;width:16.02%;height:18.72%'><img border=0
+src="slide0008_image019.png" style='position:absolute;top:8.3%;left:18.27%;
+width:73.37%;height:66.07%'><img border=0 src="slide0008_image021.png"
+style='position:absolute;top:87.27%;left:59.6%;width:30.72%;height:13.42%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>The Basic Statistics
+  page allows you to evaluate some aspects of the data quality. In this case,
+  BXD8 is a potential problem. An outlier of this type may be generated by a
+  technical artifact (bad sample?). However, it is also possible that BXD8 just
+  has genuine low endogenous expression of App and may therefore be a
+  particularly valuable model for research. There are different ways to treat
+  problematic data of these types. One way is simply to discard this datum. The
+  other way is to prevent outliers from have too much influence quantitatively,
+  while leaving them in their low (or high positions). This is called
+  windsorizing the data (after King Henry the VIII who had a habit of chopping
+  heads). In this case, we have windsorized the BXD8 to a value of 16.0 and the
+  BXD33 to a value of 16.02. Rank is retained. We are making a bet that the two
+  lowest strains are really low, but we are hedging our bet and just making
+  them a little lower than BXD90. This removes their �undue� influence.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>1. It turns out that
+  BXD8 is a strain with many odd phenotypes. The whole strain is essentially an
+  outlier for many traits. Therefore, the low App expression data may be quite
+  accurate. Still, it would be comforting to have at least two more replicates.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image018.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image018.png
new file mode 100755
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image019.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image019.png
new file mode 100755
index 00000000..7e86d735
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image019.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image021.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image021.png
new file mode 100755
index 00000000..2f8dfb0a
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_image021.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_notes_pane.htm
new file mode 100755
index 00000000..455928c7
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0008_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>The Basic Statistics
+  page allows you to evaluate some aspects of the data quality. In this case,
+  BXD8 is a potential problem. An outlier of this type may be generated by a
+  technical artifact (bad sample?). However, it is also possible that BXD8 just
+  has genuine low endogenous expression of App and may therefore be a
+  particularly valuable model for research. There are different ways to treat
+  problematic data of these types. One way is simply to discard this datum. The
+  other way is to prevent outliers from have too much influence quantitatively,
+  while leaving them in their low (or high positions). This is called
+  windsorizing the data (after King Henry the VIII who had a habit of chopping
+  heads). In this case, we have windsorized the BXD8 to a value of 16.0 and the
+  BXD33 to a value of 16.02. Rank is retained. We are making a bet that the two
+  lowest strains are really low, but we are hedging our bet and just making
+  them a little lower than BXD90. This removes their �undue� influence.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>1. It turns out that
+  BXD8 is a strain with many odd phenotypes. The whole strain is essentially an
+  outlier for many traits. Therefore, the low App expression data may be quite
+  accurate. Still, it would be comforting to have at least two more replicates.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009.htm
new file mode 100755
index 00000000..2daff7ac
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0009.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:0%;left:1.72%;width:93.64%;height:14.48%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:56;position:absolute;top:0%;left:2.12%;width:96.6%;
+height:51.21%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> expression after
+windsorizing</span></div>
+</div>
+<img border=0 src="slide0009_image022.png" style='position:absolute;top:8.83%;
+left:2.51%;width:94.17%;height:83.74%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Now we get a much better
+  feel for the variation in the error among the cases. Those without error bars
+  are of course the �noisiest� of all. This data set is not complete yet (the
+  aim is to acquire at least one male-female sample for each BXD strain).</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_image022.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_image022.png
new file mode 100755
index 00000000..e03c35ed
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_image022.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_notes_pane.htm
new file mode 100755
index 00000000..b2f9f9f2
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0009_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Now we get a much better
+  feel for the variation in the error among the cases. Those without error bars
+  are of course the �noisiest� of all. This data set is not complete yet (the
+  aim is to acquire at least one male-female sample for each BXD strain).</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010.htm
new file mode 100755
index 00000000..4d02c34e
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0010.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:0%;left:.79%;width:93.64%;height:14.48%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:56;position:absolute;top:0%;left:2.12%;width:97.45%;
+height:51.21%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Discovering shared
+expression patterns</span></div>
+</div>
+<img border=0 src="slide0010_image023.png" style='position:absolute;top:10.07%;
+left:3.31%;width:94.17%;height:37.27%'><img border=0
+src="slide0010_image024.png" style='position:absolute;top:38.86%;left:61.72%;
+width:13.77%;height:14.84%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Finally, we can now
+  start an analysis.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>We ask a simple
+  question:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Do differences in this
+  particular App transcript steady-state abundance level correlate with those
+  of any other transcripts in the same INIA Brain mRNA M430 data set?</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>1.</font><font
+  face=Helvetica size=3>You can CHOOSE many other DATABASES at this point if
+  you want, but for now let�s stick with the default.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>2. There are different
+  ways to sort the correlations. The most obvious is by p-value (most
+  significant values at the top of the list), but it is also interesting to
+  sort the top 100 or top 500 by their gene symbol (gene ID) or by their
+  chromosomal location (position).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>3. If you don�t want
+  your analysis to be sensitive to outliers, then you may want to choose to use
+  the Spearman Rank Order method of calculating correlations.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image023.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image023.png
new file mode 100755
index 00000000..1d32d035
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image023.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image024.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image024.png
new file mode 100755
index 00000000..152e5045
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_image024.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_notes_pane.htm
new file mode 100755
index 00000000..3d3f0e48
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0010_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Finally, we can now
+  start an analysis.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>We ask a simple
+  question:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Do differences in this
+  particular App transcript steady-state abundance level correlate with those
+  of any other transcripts in the same INIA Brain mRNA M430 data set?</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font
+  face=Helvetica size=2>You can CHOOSE many other DATABASES at this point if
+  you want, but for now let�s stick with the default.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. There are different
+  ways to sort the correlations. The most obvious is by p-value (most
+  significant values at the top of the list), but it is also interesting to
+  sort the top 100 or top 500 by their gene symbol (gene ID) or by their
+  chromosomal location (position).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>3. If you don�t want
+  your analysis to be sensitive to outliers, then you may want to choose to use
+  the Spearman Rank Order method of calculating correlations.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011.htm
new file mode 100755
index 00000000..362057fc
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0011.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:.35%;left:-.79%;width:93.64%;height:14.48%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:56;position:absolute;top:0%;left:2.12%;width:96.6%;
+height:51.21%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Transcript neighborhoods</span></div>
+</div>
+<img border=0 src="slide0011_image025.png" style='position:absolute;top:7.77%;
+left:2.51%;width:85.82%;height:91.87%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>The Traits Correlation
+  output window (Correlation Results) compares App expression data with all
+  other traits in this INIA Brain data set. The most significant 100 or 500
+  transcripts are sorted by their p-values. The top correlation is that of the
+  probe set to itself (often a value of 1.0, but in this case we modified the
+  App values manually by windsorizing the data). The next best correlation is
+  to another App probe set. The fourth correlation is interesting and suggests
+  that there may be a link between App and a particular type of ataxia (Atcay).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>1.</font><font
+  face=Helvetica size=3>Use the checkboxes to the far left to select traits
+  that you want to study together. Once you have selected interesting traits,
+  click on the ADD SELECTION button. This puts all of the selected traits into
+  a SELECTIONS WINDOW for other types of analysis.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>2. The p-value is not
+  corrected for multiple tests. A conservative approach for array data would be
+  to assume 10,000 nominally independent tests. Subtract 4 from the exponent
+  and if the value is still smaller than 0.05 you may have a real correlation.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>3. The LITERATURE
+  CORRELATION is a data type generated by Drs. Ramin Homayouni and Michael
+  Berry. Click on the header column by the asterisk for more information on
+  this highly useful data type.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>4. We are using Pearson
+  product moment correlations rather that the Spearman rank order correlation.
+  But you can select either in the previous step.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_image025.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_image025.png
new file mode 100755
index 00000000..d29a333f
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_image025.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_notes_pane.htm
new file mode 100755
index 00000000..1f0dd0d1
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0011_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>The Traits Correlation
+  output window (Correlation Results) compares App expression data with all
+  other traits in this INIA Brain data set. The most significant 100 or 500
+  transcripts are sorted by their p-values. The top correlation is that of the
+  probe set to itself (often a value of 1.0, but in this case we modified the
+  App values manually by windsorizing the data). The next best correlation is
+  to another App probe set. The fourth correlation is interesting and suggests
+  that there may be a link between App and a particular type of ataxia (Atcay).</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font
+  face=Helvetica size=2>Use the checkboxes to the far left to select traits
+  that you want to study together. Once you have selected interesting traits,
+  click on the ADD SELECTION button. This puts all of the selected traits into
+  a SELECTIONS WINDOW for other types of analysis.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. The p-value is not
+  corrected for multiple tests. A conservative approach for array data would be
+  to assume 10,000 nominally independent tests. Subtract 4 from the exponent
+  and if the value is still smaller than 0.05 you may have a real correlation.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>3. The LITERATURE
+  CORRELATION is a data type generated by Drs. Ramin Homayouni and Michael
+  Berry. Click on the header column by the asterisk for more information on
+  this highly useful data type.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>4. We are using Pearson
+  product moment correlations rather that the Spearman rank order correlation.
+  But you can select either in the previous step.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012.htm
new file mode 100755
index 00000000..4f1cf425
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0012.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:.35%;left:1.72%;width:93.64%;height:14.48%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:56;position:absolute;top:0%;left:2.12%;width:96.6%;
+height:51.21%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> and </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>Atcay</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript scatterplot </span></div>
+</div>
+<img border=0 src="slide0012_image026.png" style='position:absolute;top:8.48%;
+left:5.03%;width:66.22%;height:91.16%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>By clicking on the
+  CORRELATION of the Atcay transcript to the App transcript, you can generate a
+  Correlation plot between these two transcripts. In this App and Atcay
+  scatterplot, each point is a strain mean value. For example, BXD33 and BXD8
+  have low App and Atcay expressions. The two parental strains and the F1 are
+  also included in this plot.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_image026.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_image026.png
new file mode 100755
index 00000000..a0675ffc
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_image026.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_notes_pane.htm
new file mode 100755
index 00000000..c13d07ec
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0012_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>By clicking on the
+  CORRELATION of the Atcay transcript to the App transcript, you can generate a
+  Correlation plot between these two transcripts. In this App and Atcay
+  scatterplot, each point is a strain mean value. For example, BXD33 and BXD8
+  have low App and Atcay expressions. The two parental strains and the F1 are
+  also included in this plot.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013.htm
new file mode 100755
index 00000000..5aa623bf
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0013.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:.35%;left:.79%;width:99.47%;height:14.48%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:348;
+mso-text-indent-alt:56;position:absolute;top:0%;left:1.99%;width:96.8%;
+height:51.21%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript and eight of
+its neighbors</span></div>
+</div>
+<img border=0 src="slide0013_image027.png" style='position:absolute;top:9.71%;
+left:2.51%;width:83.84%;height:90.1%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>A group of traits from
+  many different databases can be selected and brought together for joint
+  analysis. In this case all of the content of the BXD SELECTIONS is from a
+  single BRAIN database, the top 20 neighbors of the App transcript from the
+  Correlation Results table. Eight of these neighbors plus App is shown in the
+  slide.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>1.</font><font
+  face=Helvetica size=3>All of items in the BXD SELECTIONS were selected using
+  the SELECT ALL button</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>2. The buttons at the
+  top (and bottom) of this page can do some cool stuff. We will work with
+  NETWORK GRAPH first.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>3. Think of the
+  SELECTIONS as your shopping cart. You go to different aisles in the
+  supermarket to acquire different types of items of interest. These could
+  include transcripts, classical phenotypes (longevity, brain weight, prepulse
+  inhibition, iron levels in midbrain). �Checking out� in this case involves
+  doing some analysis with the items in the cart.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>4. Different tools
+  handle different numbers of items. Most will handle up to 100 traits.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_image027.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_image027.png
new file mode 100755
index 00000000..ba473846
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_image027.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_notes_pane.htm
new file mode 100755
index 00000000..4d56b194
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0013_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>A group of traits from
+  many different databases can be selected and brought together for joint
+  analysis. In this case all of the content of the BXD SELECTIONS is from a
+  single BRAIN database, the top 20 neighbors of the App transcript from the
+  Correlation Results table. Eight of these neighbors plus App is shown in the
+  slide.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font
+  face=Helvetica size=2>All of items in the BXD SELECTIONS were selected using
+  the SELECT ALL button</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. The buttons at the
+  top (and bottom) of this page can do some cool stuff. We will work with
+  NETWORK GRAPH first.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>3. Think of the
+  SELECTIONS as your shopping cart. You go to different aisles in the
+  supermarket to acquire different types of items of interest. These could
+  include transcripts, classical phenotypes (longevity, brain weight, prepulse
+  inhibition, iron levels in midbrain). �Checking out� in this case involves
+  doing some analysis with the items in the cart.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>4. Different tools
+  handle different numbers of items. Most will handle up to 100 traits.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014.htm
new file mode 100755
index 00000000..156a5132
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: App transcript coexpression neighborhood">
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0014.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:82.15%;left:4.1%;width:96.15%;height:18.19%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'></div>
+<div style='position:absolute;top:-2.29%;left:.79%;width:105.43%;height:12.54%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='position:absolute;top:19.71%;left:1.25%;width:98.74%;
+height:61.97%'><span style='font-size:82%'><i>App</i></span><span
+style='font-size:82%'> transcript coexpression neighborhood</span><span
+style='mso-special-format:lastCR;display:none'><br>
+</span></div>
+</div>
+<img border=0 src="slide0014_image029.png" style='position:absolute;top:37.8%;
+left:1.72%;width:97.48%;height:62.19%'><img border=0
+src="slide0014_image031.png" style='position:absolute;top:11.13%;left:1.72%;
+width:79.47%;height:25.44%'><img border=0 src="slide0014_image033.png"
+style='position:absolute;top:10.6%;left:81.32%;width:18.8%;height:9.89%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Output of the Network
+  Graph. Warm colors (orange and red) are positive correlations above 0.5
+  whereas cool colors (green and blue) are negative correlations. Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>1.</font><font
+  face=Helvetica size=3> All of the nodes (gene/transcripts) on this graph are
+  clickable.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>2. For this graph the
+  App expression values have �reverted� to their pre-Windsorized values.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>3. To generate this
+  graph, we used the default setting:<span style="mso-spacerun: yes">&nbsp;
+  </span>Size of 16 by 16 inches; Gene Symbols; Don't Show Correlations; Use
+  curved lines (aka �edges�).</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image029.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image029.png
new file mode 100755
index 00000000..8f560834
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image029.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image031.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image031.png
new file mode 100755
index 00000000..8d72b4c1
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image031.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image033.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image033.png
new file mode 100755
index 00000000..c1cd1c01
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_image033.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_notes_pane.htm
new file mode 100755
index 00000000..728a1a82
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0014_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Output of the Network
+  Graph. Warm colors (orange and red) are positive correlations above 0.5
+  whereas cool colors (green and blue) are negative correlations. Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font
+  face=Helvetica size=2> All of the nodes (gene/transcripts) on this graph are
+  clickable.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. For this graph the
+  App expression values have �reverted� to their pre-Windsorized values.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>3. To generate this
+  graph, we used the default setting:<span style="mso-spacerun: yes">&nbsp;
+  </span>Size of 16 by 16 inches; Gene Symbols; Don't Show Correlations; Use
+  curved lines (aka �edges�).</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015.htm
new file mode 100755
index 00000000..c2a26be3
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0015.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:0%;left:.79%;width:93.64%;height:14.48%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:292;
+mso-text-indent-alt:0;position:absolute;top:0%;left:1.13%;width:97.59%;
+height:51.21%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Correlations of </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> with classical traits</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+<img border=0 src="slide0015_image034.png" style='position:absolute;top:28.97%;
+left:4.1%;width:78.27%;height:70.84%'><img border=0 src="slide0015_image035.png"
+style='position:absolute;top:8.12%;left:4.1%;width:33.5%;height:19.61%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Going back to the Trait
+  Data and Analysis Form window, we have computed the correlations between
+  strain variation in App expression level and other classical phenotypes that
+  have already been measured in many of the same BXD strains.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=3>1.</font><font
+  face=Helvetica size=3>The number of common strains varies widely--in this
+  case from 14 to 23 strains.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>2. We can add these
+  traits (four are selected) to our BXD SELECTIONS window.</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image034.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image034.png
new file mode 100755
index 00000000..dafa2898
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image034.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image035.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image035.png
new file mode 100755
index 00000000..35566d47
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_image035.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_notes_pane.htm
new file mode 100755
index 00000000..373646fe
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0015_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Going back to the Trait
+  Data and Analysis Form window, we have computed the correlations between
+  strain variation in App expression level and other classical phenotypes that
+  have already been measured in many of the same BXD strains.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Arial size=2>1.</font><font
+  face=Helvetica size=2>The number of common strains varies widely--in this
+  case from 14 to 23 strains.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>2. We can add these
+  traits (four are selected) to our BXD SELECTIONS window.</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016.htm
new file mode 100755
index 00000000..9432ca4c
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0016.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:0%;left:.79%;width:99.47%;height:10.24%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:292;
+mso-text-indent-alt:0;position:absolute;top:0%;left:1.06%;width:98.66%;
+height:72.41%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Network Graph of </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> with classical traits</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+<img border=0 src="slide0016_image036.png" style='position:absolute;top:8.3%;
+left:3.31%;width:88.21%;height:90.63%'></div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>We have computed the
+  Network Graph, now using other types of traits.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Saline Hot Plate Latency
+  is the green node labeled 10020.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Freezing (fear) is the
+  green node labeled 10447.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_image036.png b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_image036.png
new file mode 100755
index 00000000..baa1d807
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_image036.png
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_notes_pane.htm
new file mode 100755
index 00000000..c2a078c5
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0016_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>We have computed the
+  Network Graph, now using other types of traits.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Saline Hot Plate Latency
+  is the green node labeled 10020.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Freezing (fear) is the
+  green node labeled 10447.</font><br>
+  </td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Helvetica size=2>Notes:</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0017.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0017.htm
new file mode 100755
index 00000000..afb498b8
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0017.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<link rel=Stylesheet href="master03_stylesheet.css">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript><!--
+gId="slide0017.htm"
+if ( !parent.base.g_done && (parent.base.msie < 0 ) ) {
+	parent.base.g_done = 1;
+	document.location.replace( parent.base.GetHrefObj(parent.base.g_currentSlide).m_slideHref);
+}
+if( !IsNts() ) Redirect( "PPTSld", gId );
+var g_hasTrans = true, g_autoTrans = false, g_transSecs = 1;
+//-->
+</script><script for=window event=onload language=JavaScript><!--
+if( !IsSldOrNts() ) return;
+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
+//-->
+</script>
+</head>
+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
+onresize="_RSW()" onkeypress="_KPH(event)">
+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
+width:755px;height:566px;font-size:16px;background-color:#484848;clip:rect(0%, 101%, 101%, 0%);
+visibility:hidden'><img src="master03_background.png" v:shapes="_x0000_s1026"
+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:1.41%;left:3.31%;width:93.64%;height:14.48%;
+filter:DropShadow(Color=#000000, OffX=1, OffY=1)'>
+<div class=B style='mso-line-spacing:"-220 0 -216";mso-margin-left-alt:292;
+mso-text-indent-alt:0;position:absolute;top:0%;left:1.13%;width:97.59%;
+height:51.21%'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Summary of Part 1:</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:10.77%;left:8.47%;width:100.79%;height:47.87%'>
+<div class=O1 style='mso-margin-left-alt:432'></div>
+<div class=O2 style='mso-margin-left-alt:720'></div>
+<div class=O3 style='mso-margin-left-alt:1008'></div>
+<div class=O4 style='mso-margin-left-alt:1296'></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:0%;
+left:0%;width:90.14%;height:11.07%'><span style='position:absolute;top:0%;
+left:2.76%;width:97.23%'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.84%;font-family:Arial'>1.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You have learned the basics
+about searching for traits<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:11.43%;
+left:0%;width:84.88%;height:11.07%'><span style='position:absolute;top:0%;
+left:2.94%;width:97.05%'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-3.03%;font-family:Arial'>2.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know some methods to check
+data quality<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:22.5%;
+left:0%;width:84.88%;height:11.07%'><span style='position:absolute;top:0%;
+left:2.94%;width:97.05%'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-3.03%;font-family:Arial'>3.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to edit bad or
+suspicious data<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:33.57%;
+left:0%;width:90.01%;height:11.07%'><span style='position:absolute;top:0%;
+left:2.77%;width:97.22%'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.85%;font-family:Arial'>4.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to review the
+basic statistics of a trait<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:44.64%;
+left:0%;width:93.56%;height:22.14%'><span style='position:absolute;top:0%;
+left:2.66%;width:97.33%'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.74%;font-family:Arial'>5.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
+scattergram between two </span></span><span style='position:absolute;
+top:50.0%;left:2.66%;width:88.06%'><span style='font-family:"Gill Sans";
+font-size:200%;color:#E9EB5D;mso-color-index:3'>traits using the Traits
+Correlation tool<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:66.78%;
+left:0%;width:100.0%;height:11.07%'><span style='position:absolute;top:0%;
+left:2.49%;width:97.5%'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.56%;font-family:Arial'>6.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to add items to
+your SELECTIONS window<br>
+</span></span></div>
+<div class=O style='mso-margin-left-alt:144;position:absolute;top:77.85%;
+left:0%;width:99.34%;height:22.14%'><span style='position:absolute;top:0%;
+left:2.51%;width:97.48%'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:"numbullet3\,1";
+position:absolute;left:-2.57%;font-family:Arial'>7.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
+Network Graph of traits that </span></span><span style='position:absolute;
+top:51.66%;left:2.51%;width:82.93%'><span style='font-family:"Gill Sans";
+font-size:200%;color:#E9EB5D;mso-color-index:3'>co-vary. </span></span></div>
+</div>
+<div class=O style='position:absolute;top:67.31%;left:5.96%;width:105.29%;
+height:26.5%'><span style='position:absolute;top:0%;left:0%;width:100.0%'><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'>What does genetic covariance mean? The genetic covariance can </span></span><span
+style='position:absolute;top:20.0%;left:0%;width:96.1%'><span style='font-family:
+"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:3'>be functional and
+mechanistic, but it can also be due to linkage </span></span><span
+style='position:absolute;top:40.0%;left:0%;width:95.97%'><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'>disequilibrium. Finally, it can be due to sampling error or poor </span></span><span
+style='position:absolute;top:60.66%;left:0%;width:87.92%'><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'>experimental design. Evaluate the biological plausibility of </span></span><span
+style='position:absolute;top:80.66%;left:0%;width:85.28%'><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'>correlations. Test and be skeptical.</span></span></div>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0018.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0018.htm
new file mode 100755
index 00000000..e1ee283b
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0018.htm
@@ -0,0 +1,25 @@
+<html>
+<head>
+<meta http-equiv=Content-Type content="text/html; charset=macintosh">
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
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+<meta name=Description
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+if( MakeNotesVis() ) return;
+LoadSld( gId );
+playList();MakeSldVis(1);
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+<body style='margin:0px;background-color:black' onclick="DocumentOnClick(event)"
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+<div id=SlideObj class=sld style='position:absolute;top:0px;left:0px;
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+style='position:absolute;top:0%;left:0%;width:100.0%;height:100.0%'>
+<div style='position:absolute;top:2.29%;left:2.51%;width:94.43%;height:9.89%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";position:absolute;top:19.64%;
+left:1.4%;width:97.47%;height:69.64%'><span style='font-size:73%'><i>Contact
+for comments and improvements:</i></span><span style='font-size:82%;mso-special-format:
+lastCR;display:none'><br>
+</span></div>
+</div>
+<div style='position:absolute;top:16.6%;left:6.62%;width:90.19%;height:24.38%;
+filter:DropShadow(Color=#000000, OffX=2, OffY=2)'>
+<div class=T style='mso-line-spacing:"-358 0 -1";position:absolute;top:0%;
+left:1.46%;width:97.35%;height:100.0%'><span style='position:absolute;
+top:0%;left:0%;width:100.0%'><span style='font-size:82%'>rwilliam@nb.utmem.edu<br>
+</span></span><span
+style='position:absolute;top:34.05%;left:4.67%;width:95.47%'><span
+style='font-size:82%'><br>
+</span></span><span style='position:absolute;
+top:68.11%;left:4.67%;width:95.47%'><span style='font-size:82%;mso-special-format:
+lastCR;display:none'><br>
+</span></span></div>
+</div>
+<div class=O style='position:absolute;top:27.56%;left:9.4%;width:50.59%;
+height:7.77%'><span style='font-family:"Gill Sans";font-size:300%;color:#E9EB5D'>kmanly@utmem.edu</span></div>
+<div class=O style='position:absolute;top:83.56%;left:4.37%;width:108.34%;
+height:15.9%'><span style='position:absolute;top:0%;left:0%;width:90.83%'><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D'>The </span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D'><i>App</i></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D'> findings reviewed
+in this presentation are part of an </span></span><span style='position:absolute;
+top:33.33%;left:0%;width:100.0%'><span style='font-family:"Gill Sans";
+font-size:200%;color:#E9EB5D'>ongoing study by R. Williams. R. Homayouni, and
+R. Clark (July 15, </span></span><span style='position:absolute;top:66.66%;
+left:0%;width:84.35%'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>2005)</span><span style='font-family:"Gill Sans";font-size:300%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><br>
+</span></span></div>
+</div>
+<div id=NotesObj style='display:none'>
+<table style='color:white' border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=3>END</font><br>
+  </td>
+ </tr>
+</table>
+</div>
+<script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
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new file mode 100755
index 00000000..e06bd0db
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0018_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0018_notes_pane.htm
new file mode 100755
index 00000000..e2cb435a
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0018_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>END</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0019.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0019.htm
new file mode 100755
index 00000000..e6b8658d
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0019.htm
@@ -0,0 +1,153 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
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+}
+</script>
+<meta name=Description content="Aug-15-05: GeneNetwork and WebQTL:">
+<style media=print>
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+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
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+}//-->
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+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.03 * g_width; myheight = 0.09 * g_height; mywidth = 0.84 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.09 * g_height; mywidth = 0.82 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-277 0 -1";mso-margin-left-alt:232;
+mso-text-indent-alt:0;mso-line-spacing:"-277 0 -1";mso-margin-left-alt:232;
+mso-text-indent-alt:0'><span style='font-size:105%'><i>GeneNetwork and WebQTL:</i></span><span
+style='font-size:68%;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.24 * g_height; myleft = 0.05 * g_width; myheight = 0.5 * g_height; mywidth = 0.69 * g_width;
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+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.36 * g_height; mywidth = 0.67 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.19 * g_height; mywidth = 0.62 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-256 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
+56'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.62 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Part 1: How to study </span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0.05 * g_width; myheight = 0.07 * g_height; mywidth = 0.57 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:106%;color:#E9EB5D;mso-color-index:
+3'>expression variation and </span></span></layer><script>
+	mytop = 0.11 * g_height; myleft = 0.05 * g_width; myheight = 0.07 * g_height; mywidth = 0.57 * g_width;
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+</script><span
+style='text-align:left'><span style='font-size:106%;color:#E9EB5D;mso-color-index:
+3'>covariation (slides 2&#8211;16)<br>
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+</layer><script>
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+<div style='mso-line-spacing:"-256 0 -216";mso-margin-left-alt:348;mso-text-indent-alt:
+56'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.67 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='mso-special-format:nobullet;display:none;
+color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Part 2. Discovering
+upstream </span></span></layer><script>
+	mytop = 0.06 * g_height; myleft = 0.05 * g_width; myheight = 0.07 * g_height; mywidth = 0.59 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:106%;color:#E9EB5D;mso-color-index:
+3'>modulators (slides 17&#8211;30)</span><span style='font-size:94%;color:#E9EB5D;
+mso-color-index:3;mso-special-format:lastCR;display:none'><br>
+</span></span></layer></div>
+</layer></div>
+</layer></div>
+</layer><script>
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+</script></div>
+</layer><script>
+	mytop = 0.79 * g_height; myleft = 0.75 * g_width; myheight = 0.14 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.06 * g_height; mywidth = 0.1 * g_width;
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+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:"Arial Rounded MT Bold";font-size:233%;color:#6E6E6E'>RNA</span><span
+style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
+display:none'><br>
+</span></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 0.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-346 0 0";mso-margin-left-alt:17;mso-text-indent-alt:
+17'><span style='font-family:"Arial Rounded MT Bold";font-size:300%;color:#6E6E6E;
+mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.66 * g_height; myleft = 0.03 * g_width; myheight = 0.11 * g_height; mywidth = 0.8 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.8 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'><i>PowerPoint �Normal view� has notes that may
+be </i></span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.69 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'><i>useful companions to these slides.</i></span><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3;mso-special-format:lastCR;display:none'><br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.06 * g_width; myheight = 0.07 * g_height; mywidth = 0.55 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><span style='font-family:"Gill Sans";font-size:283%;
+color:#E9EB5D'><i>a PowerPoint Presentation</i></span><span style='font-family:
+"Gill Sans";font-size:317%;color:#E9EB5D;mso-special-format:lastCR;display:
+none'><i><br>
+</i></span></div>
+</layer><script>
+	mytop = 0.92 * g_height; myleft = 0.75 * g_width; myheight = 0.03 * g_height; mywidth = 0.26 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><span style='font-family:Helvetica;font-size:167%;
+color:#E9EB5D'><i>RWW 07.23.2005</i></span></div>
+</layer><script>
+	mytop = 0.81 * g_height; myleft = 0.03 * g_width; myheight = 0.11 * g_height; mywidth = 0.77 * g_width;
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+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
+mso-color-index:3'><i>You can also download this PowerPoint at<br>
+</i></span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.77 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
+mso-color-index:3'><i>ftp://atlas.utmem.edu/public/webqtl_demo2.ppt </i></span><span
+style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;mso-color-index:
+3;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Welcome to a short
+   demonstration of the GeneNetwork and its WebQTL module. Please adjust the
+   size of the windows on your monitor so that you can see part of this page,
+   as well as GeneNetwork windows. WebQTL produces a large number of new
+   windows, so you may need to modify your browser preferences to permit
+   pop-ups. In this demonstration, we explore one important transcript
+   expressed in the brain: the amyloid beta precursor protein messenger RNA. A
+   protein product of this mRNA, the APP protein, is associated with
+   Alzheimer�s disease.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>My thanks to Dr. Robert
+   F. Clark and Wenli Cai for testing this PowerPoint demonstration and making
+   many improvements.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>(Initial version of
+   June 2003 by Rob Williams. Edits July 13, 2005 by RW and RFC. Edit July 14,
+   2005 by WC. Final edits by RF Clark, July 22, 2005.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0019_notes_pane.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0019_notes_pane.htm
new file mode 100755
index 00000000..e2cb435a
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0019_notes_pane.htm
@@ -0,0 +1,5 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<link id=Main-File rel=Main-File href="webqtl_demo2_part1.ppt.htm">
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+</head>
+<body bgcolor=black text=white>
+<table border=0 width="100%">
+ <tr>
+  <td width=5 nowrap></td>
+  <td width="100%"></td>
+ </tr>
+ <tr>
+  <td colspan=1></td>
+  <td align=left colspan=1><font face=Verdana size=2>END</font><br>
+  </td>
+ </tr>
+</table>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0020.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0020.htm
new file mode 100755
index 00000000..da8b9759
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0020.htm
@@ -0,0 +1,172 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0020.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
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+
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+g_left = 0;
+
+if ( g_width < ( g_origWidth * g_height /g_origHeight ) )
+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
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+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0 * g_width; myheight = 0.86 * g_height; mywidth = 0.86 * g_width;
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+</script>
+<div><script language=JavaScript><!--
+xx = 0 * g_width;
+yy = 0.08 * g_height;
+ht = 0.86 * g_height;
+wd = 0.86 * g_width;
+document.write(
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+//-->
+</script></div>
+</layer><script>
+	mytop = 0.34 * g_height; myleft = 0.59 * g_width; myheight = 0.14 * g_height; mywidth = 0.12 * g_width;
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+</script>
+<div><script language=JavaScript><!--
+xx = 0.59 * g_width;
+yy = 0.34 * g_height;
+ht = 0.14 * g_height;
+wd = 0.12 * g_width;
+document.write(
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+//-->
+</script></div>
+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-224 0 0"'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'>Choose<br>
+</span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-224 0 0"'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'>database</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.62 * g_height; myleft = 0.86 * g_width; myheight = 0.12 * g_height; mywidth = 0.21 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.1 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
+mso-color-index:3'>Enter<br>
+</span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-line-spacing:"-224 0 0"'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'><i>APP</i></span><span
+style='font-family:"Gill Sans";font-size:250%;color:#E9EB5D;mso-color-index:
+3;mso-special-format:lastCR;display:none'><i><br>
+</i></span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.77 * g_height; myleft = 0.85 * g_width; myheight = 0.12 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.1 * g_height; mywidth = 0.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><span style='font-family:"Gill Sans";font-size:217%;color:#E9EB5D;
+mso-color-index:3'>Select<br>
+</span></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.11 * g_width;
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+</script>
+<div style='mso-line-spacing:"-224 0 0"'><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3'>search</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.09 * g_height; mywidth = 1.11 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 1.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div>
+<layer>
+ <div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+ font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+ mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+ font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+ mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+ font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+ mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+ font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+ mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+ mso-text-raise:0%'></div>
+</layer>
+<script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 1.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>PART 1: How to study
+variation and covariation</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.15 * g_height; myleft = 0.85 * g_width; myheight = 0.22 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.21 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%;mso-line-spacing:"-224 0 0";mso-line-spacing:"-224 0 0"'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>Choose<span style="mso-spacerun: yes">&nbsp;
+</span></span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.13 * g_width;
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+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>species, </span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.13 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>group, </span></span></layer><script>
+	mytop = 0.15 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>and type</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.71 * g_height; myleft = 0.48 * g_width; myheight = 0.13 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.48 * g_width;
+yy = 0.71 * g_height;
+ht = 0.13 * g_height;
+wd = 0.12 * g_width;
+document.write(
+'<img border=0 src="slide0002_image004.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Please link to the web
+   site:<span style="mso-spacerun: yes">&nbsp;
+   </span>http://www.genenetwork.org</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>To begin a search you
+   make choices about what species, group, and database to explore.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>For this demonstration
+   enter APP as above and click on the SEARCH button. Make sure that the
+   DEFAULT SETTINGS are species = Mouse, Group = BXD, Type = Whole Brain, and
+   Database = INIA BRAIN mRNA M430 (Apr05) PDNN.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>1. The GeneNetwork and
+   WebQTL are often used to work with public data sets. However, it is possible
+   to enter and analyze your own data for specific genetic reference
+   populations such as the BXD genetic reference population of mice or the HXB
+   strains of rat. Entering your own data is a more advanced topic, but if you
+   click on the HOME pop-down menu (upper left), you will see �Enter Trait
+   Data� that will explain the process.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>2.</font><font
+   face=Helvetica size=3> For help on advanced searching methods read the left
+   side of the page (INTRODUCTION).<span style="mso-spacerun: yes">&nbsp;
+   </span>If you make a search term too complex, you may get no hits (try
+   entering �amyloid beta� for example). If you make it too simple, you may
+   also get too many.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>3.</font><font
+   face=Helvetica size=3> Use the asterisk * as a wildcard. For example, to
+   find all <i>Hoxb</i> transcripts, search for Hoxb*.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>4.</font><font
+   face=Helvetica size=3> In some cases you can also research for transcripts
+   and genes using special search strings such as �</font><font face=Geneva
+   size=3>Mb = (Chr1, 100 102)� to find all genes on Chromosome 1 between 98
+   and 104 megabases (don�t actually use the quotes). Details are described at </font><font
+   face=Verdana size=3>http://www.genenetwork.org/searchHelp.html</font><font
+   face=Geneva size=3>.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>5.<span
+   style="mso-spacerun: yes">&nbsp;&nbsp; </span>These INFO buttons provide
+   links to data about the different data types. Try them.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>6.<span
+   style="mso-spacerun: yes">&nbsp; </span>The SET TO DEFAULT button is used to
+   change the database default setting to match your typical search categories.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0021.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0021.htm
new file mode 100755
index 00000000..0e0eb529
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0021.htm
@@ -0,0 +1,129 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
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+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
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+}
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+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0021.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
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+</script>
+<div><script language=JavaScript><!--
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+wd =   g_width;
+document.write(
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+</layer><script>
+	mytop = 0.34 * g_height; myleft = 0.59 * g_width; myheight = 0.14 * g_height; mywidth = 0.12 * g_width;
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+<div><script language=JavaScript><!--
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+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.09 * g_height; mywidth = 1.05 * g_width;
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+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 1.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div>
+<layer>
+ <div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+ font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
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+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+ font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+ mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+ font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+ mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+ font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+ mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;font-size:213%;
+ mso-text-raise:0%'></div>
+</layer>
+<script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.07 * g_height; mywidth = 1.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Please also use the
+Glossary, FAQ, and News</span></div>
+</layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.01 * g_width; myheight = 0.6 * g_height; mywidth = 0.69 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.1 * g_height;
+ht = 0.6 * g_height;
+wd = 0.69 * g_width;
+document.write(
+'<img border=0 src="slide0003_image006.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.09 * g_height; myleft = 0.18 * g_width; myheight = 0.13 * g_height; mywidth = 0.12 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.18 * g_width;
+yy = 0.09 * g_height;
+ht = 0.13 * g_height;
+wd = 0.12 * g_width;
+document.write(
+'<img border=0 src="slide0003_image008.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.49 * g_height; myleft = 0.38 * g_width; myheight = 0.48 * g_height; mywidth = 0.6 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.38 * g_width;
+yy = 0.49 * g_height;
+ht = 0.48 * g_height;
+wd = 0.6 * g_width;
+document.write(
+'<img border=0 src="slide0003_image009.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>SHORT DETOUR to the
+   HELP menu. If you are new to the GeneNetwork, you may find it helpful to
+   review the The Glossary and FAQ pages shown above. We are in the process of
+   making �live� demos for some of the key modules in the GeneNetwork. Check
+   the NEWS every month or two to find out about new features.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0022.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0022.htm
new file mode 100755
index 00000000..663a5f0f
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0022.htm
@@ -0,0 +1,140 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Search results">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0022.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
+g_origHeight = 566;
+g_origWidth = 755;
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+g_height = window.innerHeight - 10;
+
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+
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+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
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+document.SlideLayer.clip.left = 0;
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+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
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+</layer><script>
+	mytop = 0.09 * g_height; myleft = 0.03 * g_width; myheight = 0.9 * g_height; mywidth = 0.68 * g_width;
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+</script>
+<div><script language=JavaScript><!--
+xx = 0.63 * g_width;
+yy = 0.63 * g_height;
+ht = 0.06 * g_height;
+wd = 0.14 * g_width;
+document.write(
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+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
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+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.21 * g_height; mywidth = 0.18 * g_width;
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+<div style='mso-line-spacing:"-224 0 0"'><script>
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+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
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+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.18 * g_width;
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+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>this probe </span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>set in red </span></span></layer><script>
+	mytop = 0.15 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>and</span><span style='font-family:"Gill Sans";
+font-size:217%;color:#E9EB5D;mso-color-index:3;display:none'><i><br>
+</i></span></span></layer></div>
+</layer><script>
+	mytop = 0.2 * g_height; myleft = 0 * g_width; myheight = 0.26 * g_height; mywidth = 0.18 * g_width;
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+<div style='mso-line-spacing:"-224 0 0"'><script>
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+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>do NOT </span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>have to </span></span></layer><script>
+	mytop = 0.15 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>select the </span></span></layer><script>
+	mytop = 0.2 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:217%;
+color:#E9EB5D;mso-color-index:3'>checkbox</span><span style='font-family:"Gill Sans";
+font-size:250%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></span></layer></div>
+</layer></div>
+</layer><script>
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+</script>
+<div><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%'><span style='font-size:82%'>Search results</span><span
+style='mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>RESULTS OF THE APP
+   SEARCH.<span style="mso-spacerun: yes">&nbsp; </span>A search of the INIA
+   Brain database generates 18 matches, 10 of which are shown above. The
+   GeneNetwork will display several hundred matches in pages of 40 each. If a
+   search generates a larger numbers of hits, then you will need to refine
+   search terms.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>1. APP is a great
+   transcript to introduce you to the complexity and power of new array
+   platforms that often provide �alternative� expression estimates for single
+   genes. There are seven probe sets that target different parts of the APP
+   transcript. Which of the alternative measurements is most appropriate and
+   informative? Have a look at the FAQ page for more on this topic, but general
+   advice: 1. be skeptical and try to validate that the correct transcript and
+   gene is being measured; 2. check what part of the transcript is
+   complementary to the probes; 3. evaluate the performance of individual
+   probes based on expression level, signal-to-noise and other error terms such
+   as the standard deviation and error.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. In this particular
+   case we have highlighted and selected # 5 on this SEARCH RESULTS page. The
+   annotation for this probe set mentions that it targets the last three exons
+   and the 3� untranslated region (UTR) of the amyloid precursor protein (APP).<span
+   style="mso-spacerun: yes">&nbsp; </span>That is just what we want.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>3. Most probe sets have
+   not been annotated in as much detail as App. Refer tot the FAQ to learn how
+   to annotate probe sets yourself.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0023.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0023.htm
new file mode 100755
index 00000000..10a6218a
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0023.htm
@@ -0,0 +1,128 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
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+wd =   g_width;
+document.write(
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+</layer><script>
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+//-->
+</script></div>
+</layer><script>
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+<div><script>
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+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'>First page of data: The
+Trait Data and Analysis Form</span><span style='font-size:106%;color:#E9EB5D;
+mso-color-index:3;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
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+//-->
+</script></div>
+</layer><script>
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+<div><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:200%;color:#E9EB5D'><i>Click </i></span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:200%;color:#E9EB5D'><i>here<br>
+</i></span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.15 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><span style='font-size:200%;color:#E9EB5D'><i>to learn<br>
+</i></span></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.14 * g_width;
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+</script>
+<div><span style='font-size:200%;color:#E9EB5D'><i>about<br>
+</i></span></div>
+</layer><script>
+	mytop = 0.21 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.14 * g_width;
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+</script>
+<div><span style='font-size:200%;color:#E9EB5D'><i>data<br>
+</i></span></div>
+</layer><script>
+	mytop = 0.27 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.14 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><span style='font-size:200%;color:#E9EB5D'><i>source</i></span></div>
+</layer></div>
+</layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>The Trait Data and
+   Analysis Form is the single most important page from the point of view of
+   working with GeneNetwork data. Please read the text carefully. Explore the
+   links, but do not close this page. We will need it many more times in this
+   demonstration.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>1. What is this
+   database? It is called INIA Brain mRNA M430 (Apr05) PDNN, but what does that
+   actually mean. How much of the brain was used? How were the animals
+   processed? Most of these types of questions can be answered by clicking on
+   the DATABASE link.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. Transcript/gene
+   LOCATION data is usually from the most recent assembly. You can VERIFY the
+   location of the probes and probe set using the two VERIFY buttons. VERIFY
+   UCSC performs a sequence alignment (BLAT analysis) of the probes to the most
+   recent assembly.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>3. The PROBE TOOL
+   button provides you with highly detailed information on the probe sequences
+   used to assemble the probe set. For example, in this case you can find out
+   which probes correspond to which of the three exons. You can also review the
+   performance of the individual probes. Please check the GLOSSARY for
+   additional details on probes.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>4. The identifiers
+   (IDs) provide links to other key resources.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0024.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0024.htm
new file mode 100755
index 00000000..97f09734
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0024.htm
@@ -0,0 +1,93 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
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+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = -0.01 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.97 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Data sources: Metadata
+for each resource</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.06 * g_height; myleft = 0.03 * g_width; myheight = 0.92 * g_height; mywidth = 0.6 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.03 * g_width;
+yy = 0.06 * g_height;
+ht = 0.92 * g_height;
+wd = 0.6 * g_width;
+document.write(
+'<img border=0 src="slide0006_image015.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Most of the database
+   components and resources in The GeneNetwork are linked to metadata pages
+   that provide a human-readable summary of how, why, where, when, and with
+   whom the data were generated. Before you get too involved with a data set,
+   it is naturally important to read this information. While the data in The
+   GeneNetwork may be accessible and useful, that does not always mean that the
+   data is public domain and available for you to use in publication or for
+   profit purposes. If you want to know more about the data ownership and
+   usage, please read through the POLICIES pop-down menu items.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0025.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0025.htm
new file mode 100755
index 00000000..32820d64
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0025.htm
@@ -0,0 +1,134 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0025.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
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+
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+else
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+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
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+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
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+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.06 * g_height; mywidth = 1.07 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'>Expression estimates for </span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3'> on the Trait Data form</span><span
+style='font-size:81%;color:#E9EB5D;mso-color-index:3'> </span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.81 * g_height; myleft = 0.02 * g_width; myheight = 0.11 * g_height; mywidth = 1.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.09 * g_height; mywidth = 1.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 1.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:183%;
+color:#E9EB5D;mso-color-index:3'>Trait data for each strain with SE when known.
+For array data the scale is </span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:183%;
+color:#E9EB5D;mso-color-index:3'>~ log base 2.<span style="mso-spacerun:
+yes">&nbsp;&nbsp; </span></span><span style='font-size:167%;color:#E9EB5D;
+mso-color-index:3'>F1 data = 16.723 = 2^16.723 = 108,174</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.02 * g_width; myheight = 0.72 * g_height; mywidth = 0.51 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.02 * g_width;
+yy = 0.07 * g_height;
+ht = 0.72 * g_height;
+wd = 0.51 * g_width;
+document.write(
+'<img border=0 src="slide0007_image016.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.33 * g_height; myleft = 0.57 * g_width; myheight = 0.13 * g_height; mywidth = 0.3 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.57 * g_width;
+yy = 0.33 * g_height;
+ht = 0.13 * g_height;
+wd = 0.3 * g_width;
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+'<img border=0 src="slide0007_image017.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.47 * g_height; myleft = 0.57 * g_width; myheight = 0.18 * g_height; mywidth = 0.36 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.18 * g_height; mywidth = 0.35 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.33 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D;mso-color-index:
+3'>These values can all </span></span></layer><script>
+	mytop = 0.04 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.33 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D;mso-color-index:
+3'>be changed by the </span></span></layer><script>
+	mytop = 0.09 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.35 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D;mso-color-index:
+3'>user. (Yes, there is a </span></span></layer><script>
+	mytop = 0.13 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 0.33 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:167%;color:#E9EB5D;mso-color-index:
+3'>RESET)</span></span></layer></div>
+</layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>This slide shows you
+   the lower parts of the Trait Data and Analysis Form with the data for the
+   first set of BXD strains</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0026.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0026.htm
new file mode 100755
index 00000000..7dac49e1
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0026.htm
@@ -0,0 +1,130 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0026.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
+g_origHeight = 566;
+g_origWidth = 755;
+g_width = window.innerWidth - 10;
+g_height = window.innerHeight - 10;
+
+g_top = 0;
+g_left = 0;
+
+if ( g_width < ( g_origWidth * g_height /g_origHeight ) )
+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
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+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.08 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.95 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Critiquing the </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> data the Trait Data</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.74 * g_height; myleft = 0.02 * g_width; myheight = 0.13 * g_height; mywidth = 1.1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.12 * g_height; mywidth = 1.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 1.08 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:150%;
+color:#E9EB5D;mso-color-index:3'>Use the BASIC STATISTICS button to evaluate
+the App data. You will find that App data </span></span></layer><script>
+	mytop = 0.03 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 1.09 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:150%;
+color:#E9EB5D;mso-color-index:3'>from the different strains are not equally
+trustworthy. BXD8 is an obvious outlier without </span></span></layer><script>
+	mytop = 0.07 * g_height; myleft = 0 * g_width; myheight = 0.04 * g_height; mywidth = 1.03 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:150%;
+color:#E9EB5D;mso-color-index:3'>replication (no error bar)</span><span
+style='font-size:150%;color:#E9EB5D;mso-color-index:3'>. BXD33 is also
+suspiciously low. BXD5 is noisy. </span><span style='font-family:"Gill Sans";
+font-size:150%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.02 * g_width; myheight = 0.18 * g_height; mywidth = 0.16 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.02 * g_width;
+yy = 0.07 * g_height;
+ht = 0.18 * g_height;
+wd = 0.16 * g_width;
+document.write(
+'<img border=0 src="slide0008_image018.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.18 * g_width; myheight = 0.66 * g_height; mywidth = 0.73 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
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+yy = 0.08 * g_height;
+ht = 0.66 * g_height;
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+document.write(
+'<img border=0 src="slide0008_image019.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.87 * g_height; myleft = 0.59 * g_width; myheight = 0.13 * g_height; mywidth = 0.3 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.59 * g_width;
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+ht = 0.13 * g_height;
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+document.write(
+'<img border=0 src="slide0008_image021.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>The Basic Statistics
+   page allows you to evaluate some aspects of the data quality. In this case,
+   BXD8 is a potential problem. An outlier of this type may be generated by a
+   technical artifact (bad sample?). However, it is also possible that BXD8
+   just has genuine low endogenous expression of App and may therefore be a
+   particularly valuable model for research. There are different ways to treat
+   problematic data of these types. One way is simply to discard this datum.
+   The other way is to prevent outliers from have too much influence
+   quantitatively, while leaving them in their low (or high positions). This is
+   called windsorizing the data (after King Henry the VIII who had a habit of
+   chopping heads). In this case, we have windsorized the BXD8 to a value of 16.0
+   and the BXD33 to a value of 16.02. Rank is retained. We are making a bet
+   that the two lowest strains are really low, but we are hedging our bet and
+   just making them a little lower than BXD90. This removes their �undue�
+   influence.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>1. It turns out that
+   BXD8 is a strain with many odd phenotypes. The whole strain is essentially
+   an outlier for many traits. Therefore, the low App expression data may be
+   quite accurate. Still, it would be comforting to have at least two more
+   replicates.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0027.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0027.htm
new file mode 100755
index 00000000..0a23d59d
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0027.htm
@@ -0,0 +1,93 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
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+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
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+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> expression after
+windsorizing</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.02 * g_width; myheight = 0.83 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
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+yy = 0.08 * g_height;
+ht = 0.83 * g_height;
+wd = 0.94 * g_width;
+document.write(
+'<img border=0 src="slide0009_image022.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Now we get a much
+   better feel for the variation in the error among the cases. Those without
+   error bars are of course the �noisiest� of all. This data set is not
+   complete yet (the aim is to acquire at least one male-female sample for each
+   BXD strain).</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0028.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0028.htm
new file mode 100755
index 00000000..cde4a136
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0028.htm
@@ -0,0 +1,104 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
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+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0028.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
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+wd =   g_width;
+document.write(
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+</layer><script>
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+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
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+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Discovering shared
+expression patterns</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.03 * g_width; myheight = 0.37 * g_height; mywidth = 0.94 * g_width;
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+</script>
+<div><script language=JavaScript><!--
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+yy = 0.1 * g_height;
+ht = 0.37 * g_height;
+wd = 0.94 * g_width;
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+//-->
+</script></div>
+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.61 * g_width;
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+ht = 0.14 * g_height;
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+document.write(
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+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Finally, we can now
+   start an analysis.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>We ask a simple
+   question:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Do differences in this
+   particular App transcript steady-state abundance level correlate with those
+   of any other transcripts in the same INIA Brain mRNA M430 data set?</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Helvetica size=3>You can CHOOSE many other DATABASES at this point if
+   you want, but for now let�s stick with the default.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. There are different
+   ways to sort the correlations. The most obvious is by p-value (most
+   significant values at the top of the list), but it is also interesting to
+   sort the top 100 or top 500 by their gene symbol (gene ID) or by their
+   chromosomal location (position).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>3. If you don�t want
+   your analysis to be sensitive to outliers, then you may want to choose to
+   use the Spearman Rank Order method of calculating correlations.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0029.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0029.htm
new file mode 100755
index 00000000..c296b9e9
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0029.htm
@@ -0,0 +1,93 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
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+		min = window.innerHeight/20;
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+</script><script language=JavaScript><!--
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+ LoadNavSld("slide0029.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
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+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Transcript neighborhoods</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.07 * g_height; myleft = 0.02 * g_width; myheight = 0.91 * g_height; mywidth = 0.85 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.02 * g_width;
+yy = 0.07 * g_height;
+ht = 0.91 * g_height;
+wd = 0.85 * g_width;
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+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>The Traits Correlation
+   output window (Correlation Results) compares App expression data with all
+   other traits in this INIA Brain data set. The most significant 100 or 500
+   transcripts are sorted by their p-values. The top correlation is that of the
+   probe set to itself (often a value of 1.0, but in this case we modified the
+   App values manually by windsorizing the data). The next best correlation is
+   to another App probe set. The fourth correlation is interesting and suggests
+   that there may be a link between App and a particular type of ataxia
+   (Atcay).</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Helvetica size=3>Use the checkboxes to the far left to select traits
+   that you want to study together. Once you have selected interesting traits,
+   click on the ADD SELECTION button. This puts all of the selected traits into
+   a SELECTIONS WINDOW for other types of analysis.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. The p-value is not
+   corrected for multiple tests. A conservative approach for array data would
+   be to assume 10,000 nominally independent tests. Subtract 4 from the
+   exponent and if the value is still smaller than 0.05 you may have a real
+   correlation.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>3. The LITERATURE
+   CORRELATION is a data type generated by Drs. Ramin Homayouni and Michael
+   Berry. Click on the header column by the asterisk for more information on
+   this highly useful data type.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>4. We are using Pearson
+   product moment correlations rather that the Spearman rank order correlation.
+   But you can select either in the previous step.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0030.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0030.htm
new file mode 100755
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@@ -0,0 +1,93 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
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+<meta name=Description content=Aug-15-05>
+<style media=print>
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+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
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+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.14 * g_height; mywidth = 0.93 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> and </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>Atcay</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript scatterplot </span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.05 * g_width; myheight = 0.91 * g_height; mywidth = 0.66 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.05 * g_width;
+yy = 0.08 * g_height;
+ht = 0.91 * g_height;
+wd = 0.66 * g_width;
+document.write(
+'<img border=0 src="slide0012_image026.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>By clicking on the
+   CORRELATION of the Atcay transcript to the App transcript, you can generate
+   a Correlation plot between these two transcripts. In this App and Atcay
+   scatterplot, each point is a strain mean value. For example, BXD33 and BXD8
+   have low App and Atcay expressions. The two parental strains and the F1 are
+   also included in this plot.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0031.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0031.htm
new file mode 100755
index 00000000..9a54b689
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0031.htm
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0031.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
+g_origHeight = 566;
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+else
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+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
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+document.SlideLayer.clip.left = 0;
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+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
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+}
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+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
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+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
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+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.14 * g_height; mywidth = 0.99 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.96 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+348;mso-text-indent-alt:56'><span style='mso-special-format:nobullet;
+display:none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> transcript and eight of
+its neighbors</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.09 * g_height; myleft = 0.02 * g_width; myheight = 0.9 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.02 * g_width;
+yy = 0.09 * g_height;
+ht = 0.9 * g_height;
+wd = 0.83 * g_width;
+document.write(
+'<img border=0 src="slide0013_image027.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>A group of traits from
+   many different databases can be selected and brought together for joint
+   analysis. In this case all of the content of the BXD SELECTIONS is from a
+   single BRAIN database, the top 20 neighbors of the App transcript from the
+   Correlation Results table. Eight of these neighbors plus App is shown in the
+   slide.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Helvetica size=3>All of items in the BXD SELECTIONS were selected using
+   the SELECT ALL button</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. The buttons at the
+   top (and bottom) of this page can do some cool stuff. We will work with
+   NETWORK GRAPH first.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>3. Think of the
+   SELECTIONS as your shopping cart. You go to different aisles in the
+   supermarket to acquire different types of items of interest. These could
+   include transcripts, classical phenotypes (longevity, brain weight, prepulse
+   inhibition, iron levels in midbrain). �Checking out� in this case involves
+   doing some analysis with the items in the cart.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>4. Different tools
+   handle different numbers of items. Most will handle up to 100 traits.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0032.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0032.htm
new file mode 100755
index 00000000..85ee47fe
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0032.htm
@@ -0,0 +1,118 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: App transcript coexpression neighborhood">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
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+}
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+}
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+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
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+document.captureEvents(Event.KEYPRESS);
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+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0032.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
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+
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+</layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div></div>
+</layer><script>
+	mytop = -0.02 * g_height; myleft = 0 * g_width; myheight = 0.12 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0.02 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 1.04 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%'><span style='font-size:82%'><i>App</i></span><span
+style='font-size:82%'> transcript coexpression neighborhood</span><span
+style='mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
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+</script>
+<div><script language=JavaScript><!--
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+ht = 0.62 * g_height;
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+document.write(
+'<img border=0 src="slide0014_image029.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.11 * g_height; myleft = 0.01 * g_width; myheight = 0.25 * g_height; mywidth = 0.79 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.01 * g_width;
+yy = 0.11 * g_height;
+ht = 0.25 * g_height;
+wd = 0.79 * g_width;
+document.write(
+'<img border=0 src="slide0014_image031.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.81 * g_width; myheight = 0.09 * g_height; mywidth = 0.18 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.81 * g_width;
+yy = 0.1 * g_height;
+ht = 0.09 * g_height;
+wd = 0.18 * g_width;
+document.write(
+'<img border=0 src="slide0014_image033.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Output of the Network
+   Graph. Warm colors (orange and red) are positive correlations above 0.5
+   whereas cool colors (green and blue) are negative correlations. Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Helvetica size=3> All of the nodes (gene/transcripts) on this graph are
+   clickable.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. For this graph the
+   App expression values have �reverted� to their pre-Windsorized values.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>3. To generate this
+   graph, we used the default setting:<span style="mso-spacerun: yes">&nbsp;
+   </span>Size of 16 by 16 inches; Gene Symbols; Don't Show Correlations; Use
+   curved lines (aka �edges�).</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0033.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0033.htm
new file mode 100755
index 00000000..042ca4ad
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0033.htm
@@ -0,0 +1,104 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0033.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
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+
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+else
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+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
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+document.SlideLayer.clip.left = 0;
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+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
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+}
+</script>
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+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
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+</layer><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.14 * g_height; mywidth = 0.93 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Correlations of </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> with classical traits</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.28 * g_height; myleft = 0.04 * g_width; myheight = 0.7 * g_height; mywidth = 0.78 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.04 * g_width;
+yy = 0.28 * g_height;
+ht = 0.7 * g_height;
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+//-->
+</script></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.04 * g_width; myheight = 0.19 * g_height; mywidth = 0.33 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.04 * g_width;
+yy = 0.08 * g_height;
+ht = 0.19 * g_height;
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+'<img border=0 src="slide0015_image035.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Going back to the Trait
+   Data and Analysis Form window, we have computed the correlations between
+   strain variation in App expression level and other classical phenotypes that
+   have already been measured in many of the same BXD strains.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Arial size=3>1.</font><font
+   face=Helvetica size=3>The number of common strains varies widely--in this
+   case from 14 to 23 strains.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>2. We can add these
+   traits (four are selected) to our BXD SELECTIONS window.</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0034.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0034.htm
new file mode 100755
index 00000000..3cf1ac70
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0034.htm
@@ -0,0 +1,93 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0034.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
+g_origHeight = 566;
+g_origWidth = 755;
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+g_height = window.innerHeight - 10;
+
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+g_left = 0;
+
+if ( g_width < ( g_origWidth * g_height /g_origHeight ) )
+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 0.99 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Network Graph of </span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'><i>App</i></span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'> with classical traits</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.08 * g_height; myleft = 0.03 * g_width; myheight = 0.9 * g_height; mywidth = 0.88 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+xx = 0.03 * g_width;
+yy = 0.08 * g_height;
+ht = 0.9 * g_height;
+wd = 0.88 * g_width;
+document.write(
+'<img border=0 src="slide0016_image036.png" x=' + xx + ' y=' +yy + ' height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>We have computed the
+   Network Graph, now using other types of traits.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Saline Hot Plate
+   Latency is the green node labeled 10020.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Freezing (fear) is the
+   green node labeled 10447.</font><br>
+   </td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Helvetica size=3>Notes:</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0035.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0035.htm
new file mode 100755
index 00000000..ca5ac8bb
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0035.htm
@@ -0,0 +1,151 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
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+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
+function restore() {
+	self.location.reload();
+}
+function set_size() {
+	document.SlideLayer.width = window.innerWidth;
+	document.SlideLayer.height = window.innerHeight;
+}
+document.captureEvents(Event.MOUSEDOWN);
+document.captureEvents(Event.KEYPRESS);
+document.onkeypress = _KPH ;
+document.onmousedown = _KPH ;
+ parent.base.highlite(); 
+</script><script language=JavaScript><!--
+function DoOnLoad() { 
+ LoadNavSld("slide0035.htm");
+}//-->
+</script>
+</head>
+<body onresize="restore()" onload="DoOnLoad()" style='font-size:&{font_size()};'
+bgcolor="#000000">
+<script>
+
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+
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+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
+
+document.write( '<layer id=SlideLayer BGCOLOR=#484848 background="" top=' + g_top + ' left=' + g_left + ' height=' + g_height + ' width=' + g_width + ' >' );
+document.SlideLayer.clip.top = 0;
+document.SlideLayer.clip.left = 0;
+document.SlideLayer.clip.height = g_height;
+document.SlideLayer.clip.width = g_width;
+function new_font_size() {
+	var size = 11 * g_width / g_origWidth;
+	if ( size < 1 ) size = 1;
+	return size+"pt";
+}
+</script>
+<div id=SlideObj class=sld style='position:relative;font-size:&{new_font_size()};'><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script language=JavaScript><!--
+ht =   g_height;
+wd =   g_width;
+document.write(
+'<img src="master03_background.png" height=' + ht + ' width=' + wd + '>' );
+//-->
+</script></div>
+</layer><script>
+	mytop = 0.01 * g_height; myleft = 0.03 * g_width; myheight = 0.14 * g_height; mywidth = 0.93 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div><script>
+	mytop = 0 * g_height; myleft = 0.01 * g_width; myheight = 0.07 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
+font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
+text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
+font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
+292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
+none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
+style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Summary of Part 1:</span><span
+style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
+display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0.08 * g_width; myheight = 0.47 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<layer>
+ <div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+ normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+ no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+ mso-text-raise:0%'></div>
+</layer>
+<script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.88 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.84%;font-family:Arial'>1.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You have learned the basics
+about searching for traits<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.85 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-3.03%;font-family:Arial'>2.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know some methods to check
+data quality<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.85 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-3.03%;font-family:Arial'>3.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to edit bad or
+suspicious data<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.9 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.88 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.85%;font-family:Arial'>4.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to review the
+basic statistics of a trait<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.21 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.91 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.74%;font-family:Arial'>5.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
+scattergram between two </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>traits using the Traits Correlation tool<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.31 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.98 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.56%;font-family:Arial'>6.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to add items to
+your SELECTIONS window<br>
+</span></span></layer></div>
+</layer><script>
+	mytop = 0.37 * g_height; myleft = 0 * g_width; myheight = 0.1 * g_height; mywidth = 1 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
+font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
+text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
+color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
+144;mso-margin-left-alt:144'><script>
+	mytop = 0 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.97 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
+position:absolute;left:-2.57%;font-family:Arial'>7.</span></span><span
+style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
+3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
+Network Graph of traits that </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0.02 * g_width; myheight = 0.05 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>co-vary. </span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.67 * g_height; myleft = 0.05 * g_width; myheight = 0.26 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><script>
+	mytop = 0 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.05 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>What does genetic covariance mean? The genetic
+covariance can </span></span></layer><script>
+	mytop = 0.05 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>be functional and mechanistic, but it can also
+be due to linkage </span></span></layer><script>
+	mytop = 0.1 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 1.01 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>disequilibrium. Finally, it can be due to
+sampling error or poor </span></span></layer><script>
+	mytop = 0.16 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.92 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>experimental design. Evaluate the biological
+plausibility of </span></span></layer><script>
+	mytop = 0.21 * g_height; myleft = 0 * g_width; myheight = 0.05 * g_height; mywidth = 0.89 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D;mso-color-index:3'>correlations. Test and be skeptical.</span></span></layer></div>
+</layer></div>
+</LAYER>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0036.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0036.htm
new file mode 100755
index 00000000..ccec2e7d
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0036.htm
@@ -0,0 +1,112 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
+content="Aug-15-05: Contact for comments and improvements:">
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:76% !important;}
+-->
+</style>
+<script language=Javascript src=script.js></script>
+<script language=JavaScript>
+function font_size() {
+	var min = window.innerWidth/20;
+	if ( min > window.innerHeight/20 )
+		min = window.innerHeight/20;
+		
+	return min+"pt";
+}
+var SoundEnabled = navigator.plugins && navigator.plugins["LiveAudio"];
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+}
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+}
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+document.captureEvents(Event.KEYPRESS);
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+ parent.base.highlite(); 
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+ LoadNavSld("slide0036.htm");
+}//-->
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+
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+g_origWidth = 755;
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+g_height = window.innerHeight - 10;
+
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+g_left = 0;
+
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+	g_height = g_width * g_origHeight / g_origWidth;
+else
+	g_width = g_origWidth * g_height / g_origHeight;
+	
+g_top = (window.innerHeight - g_height) / 2;
+g_left = (window.innerWidth - g_width) / 2;
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
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+ht =   g_height;
+wd =   g_width;
+document.write(
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+</layer><script>
+	mytop = 0.02 * g_height; myleft = 0.02 * g_width; myheight = 0.09 * g_height; mywidth = 0.94 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
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+<div><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
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+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><span
+style='font-size:73%'><i>Contact for comments and improvements:</i></span><span
+style='font-size:82%;mso-special-format:lastCR;display:none'><br>
+</span></div>
+</layer></div>
+</layer><script>
+	mytop = 0.16 * g_height; myleft = 0.06 * g_width; myheight = 0.24 * g_height; mywidth = 0.9 * g_width;
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
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+<div style='text-align:left;font-family:"Gill Sans";font-weight:normal;
+font-style:normal;text-decoration:none;text-shadow:none;text-effect:none;
+mso-fareast-hint:no;layout-flow:horizontal;color:#E9EB5D;font-size:293%;
+mso-text-raise:0%;mso-line-spacing:"-358 0 -1";mso-line-spacing:"-358 0 -1"'><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:82%'>rwilliam@nb.utmem.edu<br>
+</span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-size:82%'><br>
+</span></span></layer><script>
+	mytop = 0.16 * g_height; myleft = 0.04 * g_width; myheight = 0.07 * g_height; mywidth = 0.83 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-size:82%;mso-special-format:lastCR;
+display:none'><br>
+</span></span></layer></div>
+</layer></div>
+</layer><script>
+	mytop = 0.27 * g_height; myleft = 0.09 * g_width; myheight = 0.07 * g_height; mywidth = 0.5 * g_width;
+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
+mso-text-raise:0%'><span style='font-family:"Gill Sans";font-size:300%;
+color:#E9EB5D'>kmanly@utmem.edu</span></div>
+</layer><script>
+	mytop = 0.83 * g_height; myleft = 0.04 * g_width; myheight = 0.15 * g_height; mywidth = 1.08 * g_width;
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+</script>
+<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
+normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
+no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>The </span><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'><i>App</i></span><span style='font-family:"Gill Sans";
+font-size:200%;color:#E9EB5D'> findings reviewed in this presentation are part
+of an </span></span></layer><script>
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+	document.write( '<layer top=' + mytop + ' left=' + myleft + ' height=' + myheight + ' width=' + mywidth + ' >' );
+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>ongoing study by R. Williams. R. Homayouni, and R. Clark (July
+15, </span></span></layer><script>
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+</script><span
+style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
+color:#E9EB5D'>2005)</span><span style='font-family:"Gill Sans";font-size:300%;
+color:#E9EB5D;mso-special-format:lastCR;display:none'><br>
+</span></span></layer></div>
+</layer></div>
+</LAYER>
+
+<layer>
+ <div id=NotesObj style='display:none'>
+ <table style='color:white' border=0 width="100%">
+  <tr>
+   <td width=5 nowrap></td>
+   <td width="100%"></td>
+  </tr>
+  <tr>
+   <td colspan=1></td>
+   <td align=left colspan=1><font face=Verdana size=3>END</font><br>
+   </td>
+  </tr>
+ </table>
+ </div>
+</layer>
+<script language=JavaScript><!--
+//-->
+</script><script language=JavaScript><!--
+function playList() {
+
+}
+//-->
+</script>
+</body>
+</html>
+\ No newline at end of file
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new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0037.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
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+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+href="webqtl_demo2_part1.ppt.ppt">
+<script>
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
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+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
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+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0037.htm" );
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+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
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+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0001.gif border=0 usemap="#Slide0001.gif_map"></center>
+</body>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0038.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0038.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0038.htm
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
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+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
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+function restore() {
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+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
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+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+  		self.focus();
+  	parent.base.SldUpdated( "slide0038.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
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+</body>
+</html>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0039.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0039.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0039.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
+  	}
+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
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+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+  		self.focus();
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+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
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+</body>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0040.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0040.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0040.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content="Aug-15-05: Search results">
+<style media=print>
+<!--.sld
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
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+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+  		self.focus();
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+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
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+</body>
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+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0041.htm
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
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+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
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+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0041.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0005.gif border=0 usemap="#Slide0005.gif_map"></center>
+</body>
+</html>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0042.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0042.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0042.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
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+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
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+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+function restore() {
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+}
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+<script language=JavaScript>
+function flatLoad() {
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+	parent.base.highlite();
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+  	parent.base.SldUpdated( "slide0042.htm" );
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+ }//-->
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0043.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0043.htm
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+<html>
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+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
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+	if ( parent.base.msie < 0 ) {
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+  		document.captureEvents(Event.KEYPRESS);
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+  		document.onmousedown = _KPH;
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+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
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+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0043.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0007.gif border=0 usemap="#Slide0007.gif_map"></center>
+</body>
+</html>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0044.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0044.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0044.htm
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
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+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0044.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0008.gif border=0 usemap="#Slide0008.gif_map"></center>
+</body>
+</html>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0045.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0045.htm
new file mode 100755
index 00000000..19a153ed
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0045.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
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+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
+  	}
+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0045.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0009.gif border=0 usemap="#Slide0009.gif_map"></center>
+</body>
+</html>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0046.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0046.htm
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0046.htm
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+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0046.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0010.gif border=0 usemap="#Slide0010.gif_map"></center>
+</body>
+</html>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0047.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0047.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0047.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
+  	}
+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0047.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0011.gif border=0 usemap="#Slide0011.gif_map"></center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0048.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0048.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0048.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
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+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
+  	}
+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0048.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0012.gif border=0 usemap="#Slide0012.gif_map"></center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0049.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0049.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0049.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
+-->
+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
+  	}
+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0049.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0013.gif border=0 usemap="#Slide0013.gif_map"></center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0050.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0050.htm
new file mode 100755
index 00000000..05c91170
--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0050.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
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+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
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+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
+  	}
+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
+      	else	
+  		self.focus();
+  	parent.base.SldUpdated( "slide0050.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
+ }//-->
+</script>
+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
+<center><img src=Slide0014.gif border=0 usemap="#Slide0014.gif_map"></center>
+</body>
+</html>
+\ No newline at end of file
diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0051.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0051.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0051.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+	height:4.5in !important;
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+  		
+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
+<script language=JavaScript>
+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
+DoOnLoad();
+  	
+      
+      if ( parent.IsFullScrMode() && parent.NavPopup && !parent.NavPopup.closed )
+      		parent.NavPopup.focus();
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+  		self.focus();
+  	parent.base.SldUpdated( "slide0051.htm" );
+ } 	
+ </script><script language=JavaScript><!--
+function DoOnLoad() { 
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+</head>
+<body bgcolor="#000000" onresize="restore()" onload="flatLoad()"
+onclick="DocumentOnClick(event)" onkeypress="_KPH(event)">
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+</body>
+</html>
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diff --git a/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0052.htm b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0052.htm
new file mode 100755
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--- /dev/null
+++ b/web/tutorial/ppt/html/webqtl_demo2_part1.ppt_files/slide0052.htm
@@ -0,0 +1,34 @@
+<html>
+<head>
+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Aug-15-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
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+	height:4.5in !important;
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+</style>
+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
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+	parent.base.highlite();
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+function restore() {
+	if ( parent.base.msie < 0 ) 
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+function DoOnLoad() { 
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+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
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+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
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+<script language=JavaScript>
+function flatLoad() {
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+<meta name=ProgId content=PowerPoint.Slide>
+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description content=Jul-18-05>
+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
+	font-size:80% !important;}
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
+  		document.onkeypress = _KPH;
+  		document.onmousedown = _KPH;
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+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
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+function flatLoad() {
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+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
+genomics</title>
+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
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+}
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+function restore() {
+	if ( parent.base.msie < 0 ) 
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+}
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+function DoOnLoad() { 
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+<meta name=Generator content="Microsoft Macintosh PowerPoint 11">
+<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
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+<link title="Presentation File" type="application/powerpoint" rel=alternate
+href="webqtl_demo2_part1.ppt.ppt">
+<script>
+if ( ! top.PPTPRESENTATION ) {
+	window.location.replace( "endshow.htm" );
+}
+</script>
+<meta name=Description
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+<style media=print>
+<!--.sld
+	{left:0px !important;
+	width:6.0in !important;
+	height:4.5in !important;
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+<script language=JavaScript src=script.js></script><script language=JavaScript>
+	if ( parent.base.msie < 0 ) {
+	  	document.captureEvents(Event.MOUSEDOWN);
+  		document.captureEvents(Event.KEYPRESS);
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+function restore() {
+	if ( parent.base.msie < 0 ) 
+		self.location.reload();
+}
+</script>
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+function flatLoad() {
+if ( !parent.IsFullScrMode() )
+	parent.base.highlite();
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