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-rwxr-xr-xweb/javascript/selectDatasetMenu.js698
-rwxr-xr-xweb/javascript/webqtl.js184
2 files changed, 439 insertions, 443 deletions
diff --git a/web/javascript/selectDatasetMenu.js b/web/javascript/selectDatasetMenu.js
index 3bfdc294..bb910a5b 100755
--- a/web/javascript/selectDatasetMenu.js
+++ b/web/javascript/selectDatasetMenu.js
@@ -116,76 +116,76 @@ var tArr = [
var dArr = [
{txt:'',val:''},
-{txt:'GSE15222 Human Brain Normal Myers (Apr09) RankInv',val:'GSE15222_F_N_RI_0409'},
{txt:'GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv',val:'GSE15222_F_A_RI_0409'},
+{txt:'GSE15222 Human Brain Normal Myers (Apr09) RankInv',val:'GSE15222_F_N_RI_0409'},
+{txt:'Normal HEI Retina (April 2010) RankInv',val:'G2NEI_ILM_Retina_BXD_RI0410'},
+{txt:'Full HEI Retina (April 2010) RankInv',val:'Illum_Retina_BXD_RankInv0410'},
+{txt:'ONC HEI Retina (April 2012) RankInv',val:'ONCRetILM6_0412'},
+{txt:'B6D2 ONC Retina (April 2012) RankInv **',val:'B6D2ONCILM_0412'},
{txt:'INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA **',val:'INIA_MacFas_Ac_RMA_0110'},
-{txt:'UCLA CTB6/B6CTF2 Brain (2005) mlratio',val:'UCLA_CTB6B6CTF2_BRAIN_2005'},
-{txt:'INIA Macaca fasicularis Hippocampus (Jan10) RMA **',val:'INIA_MacFas_Hc_RMA_0110'},
{txt:'UCLA CTB6/B6CTF2 Liver (2005) mlratio',val:'UCLA_CTB6B6CTF2_LIVER_2005'},
-{txt:'UCLA CTB6/B6CTF2 Muscle (2005) mlratio',val:'UCLA_CTB6B6CTF2_MUSCLE_2005'},
{txt:'UCLA CTB6/B6CTF2 Adipose (2005) mlratio',val:'UCLA_CTB6B6CTF2_ADIPOSE_2005'},
+{txt:'UCLA CTB6/B6CTF2 Brain (2005) mlratio',val:'UCLA_CTB6B6CTF2_BRAIN_2005'},
+{txt:'UCLA CTB6/B6CTF2 Muscle (2005) mlratio',val:'UCLA_CTB6B6CTF2_MUSCLE_2005'},
+{txt:'INIA Macaca fasicularis Hippocampus (Jan10) RMA **',val:'INIA_MacFas_Hc_RMA_0110'},
+{txt:'UCLA CTB6B6CTF2 Muscle Female mlratio **',val:'UCLA_CTB6B6CTF2_MUSCLE_FEMALE'},
+{txt:'INIA Macaca fasicularis Amygdala (Jan10) RMA **',val:'INIA_MacFas_AMG_RMA_0110'},
{txt:'UCLA CTB6B6CTF2 Adipose Female mlratio **',val:'UCLA_CTB6B6CTF2_ADIPOSE_FEMALE'},
{txt:'UCLA CTB6B6CTF2 Brain Female mlratio **',val:'UCLA_CTB6B6CTF2_BRAIN_FEMALE'},
-{txt:'UCLA CTB6B6CTF2 Muscle Female mlratio **',val:'UCLA_CTB6B6CTF2_MUSCLE_FEMALE'},
{txt:'UCLA CTB6B6CTF2 Liver Female mlratio **',val:'UCLA_CTB6B6CTF2_LIVER_FEMALE'},
-{txt:'INIA Macaca fasicularis Amygdala (Jan10) RMA **',val:'INIA_MacFas_AMG_RMA_0110'},
{txt:'VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile **',val:'VUBXDMouseMidBrainQ0512'},
{txt:'GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA',val:'GSE16780_UCLA_ML0911'},
-{txt:'EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleCDRMA1211'},
{txt:'EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleRMA1211'},
{txt:'EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleHFDRMA1211'},
+{txt:'EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleCDRMA1211'},
{txt:'BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **',val:'DevStriatum_ILM6.2P14RInv_1111'},
{txt:'BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **',val:'DevStriatum_ILM6.2P3RInv_1111'},
{txt:'BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv',val:'DevNeocortex_ILM6.2P14RInv_1111'},
{txt:'BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv',val:'DevNeocortex_ILM6.2P3RInv_1111'},
-{txt:'HEI Retina Illumina V6.2 (April 2010) RankInv',val:'Illum_Retina_BXD_RankInv0410'},
-{txt:'B6D2 ONC Illumina v6.1 (Apr12) RankInv **',val:'B6D2ONCILM_0412'},
-{txt:'ONC Retina Illumina V6.2 (Apr12) RankInv **',val:'ONCRetILM6_0412'},
-{txt:'HEI ONC Retina Illumina V6.2 (Sep11) RankInv **',val:'HEIONCRetILM6_0911'},
-{txt:'HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **',val:'HEIONCvsCRetILM6_0911'},
{txt:'G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **',val:'G2HEIONCRetILM6_0911'},
+{txt:'HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **',val:'HEIONCvsCRetILM6_0911'},
{txt:'JAX Liver Affy M430 2.0 (Jul11) MDP',val:'JAX_CSB_L_0711'},
{txt:'JAX Liver HF Affy M430 2.0 (Jul11) MDP',val:'JAX_CSB_L_HF_0711'},
{txt:'JAX Liver 6C Affy M430 2.0 (Jul11) MDP',val:'JAX_CSB_L_6C_0711'},
{txt:'CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **',val:'CANDLE_NB_0711'},
-{txt:'KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_HIP_0711'},
-{txt:'KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MFC_0711'},
-{txt:'KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_VFC_0711'},
-{txt:'KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_VF_0711'},
-{txt:'KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MGE_0711'},
-{txt:'KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_OC_0711'},
-{txt:'KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_V1C_0711'},
-{txt:'KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_URL_0711'},
+{txt:'KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_AMY_0711'},
+{txt:'KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_A1C_0711'},
{txt:'KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_TC_0711'},
-{txt:'KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_STR_0711'},
-{txt:'KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_OFC_0711'},
-{txt:'KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_PC_0711'},
+{txt:'KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_CBC_0711'},
+{txt:'KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_CGE_0711'},
+{txt:'KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_FC_0711'},
{txt:'KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_S1C_0711'},
-{txt:'KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MD_0711'},
+{txt:'KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_STR_0711'},
+{txt:'KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_URL_0711'},
+{txt:'KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_V1C_0711'},
+{txt:'KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_VF_0711'},
+{txt:'KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_VFC_0711'},
{txt:'KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_STC_0711'},
-{txt:'KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_FC_0711'},
-{txt:'KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DIE_0711'},
-{txt:'KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DFC_0711'},
-{txt:'KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_CGE_0711'},
-{txt:'KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DTH_0711'},
-{txt:'KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_CBC_0711'},
-{txt:'KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_AMY_0711'},
-{txt:'KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_A1C_0711'},
-{txt:'KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_IPC_0711'},
{txt:'KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_ITC_0711'},
{txt:'KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_LGE_0711'},
{txt:'KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_M1C_0711'},
+{txt:'KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MD_0711'},
+{txt:'KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_IPC_0711'},
+{txt:'KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_HIP_0711'},
+{txt:'KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MFC_0711'},
+{txt:'KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DFC_0711'},
+{txt:'KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DIE_0711'},
+{txt:'KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MGE_0711'},
+{txt:'KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DTH_0711'},
+{txt:'KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_PC_0711'},
+{txt:'KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_OC_0711'},
+{txt:'KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_OFC_0711'},
{txt:'HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio',val:'HBTRC-MLC_0611'},
{txt:'HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio',val:'HBTRC-MLC_N_0611'},
{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio',val:'HBTRC-MLPFC_0611'},
-{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio',val:'HBTRC-MLPFC_N_0611'},
{txt:'HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio',val:'HBTRC-MLC_AD_0611'},
{txt:'HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio',val:'HBTRC-MLVC_0611'},
+{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio',val:'HBTRC-MLPFC_N_0611'},
{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio',val:'HBTRC-MLPFC_AD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio',val:'HBTRC-MLVC_N_0611'},
{txt:'HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio',val:'HBTRC-MLC_HD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio',val:'HBTRC-MLVC_AD_0611'},
+{txt:'HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio',val:'HBTRC-MLVC_N_0611'},
{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio',val:'HBTRC-MLPFC_HD_0611'},
+{txt:'HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio',val:'HBTRC-MLVC_AD_0611'},
{txt:'HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio',val:'HBTRC-MLVC_HD_0611'},
{txt:'INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA',val:'INIA_AmgCoh_0311'},
{txt:'INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA',val:'INIA_Amg_BLA_RMA_1110'},
@@ -197,10 +197,6 @@ var dArr = [
{txt:'GSE5281 Human Brain Normal Full Liang (Jul09) RMA',val:'GSE5281_F_RMA_N_0709'},
{txt:'GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA',val:'GSE5281_F_RMA_Alzh_0709'},
{txt:'OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv',val:'OHSU_HS-CC_ILMStr_0211'},
-{txt:'HEI Retina Females Illumina V6.2 (Dec10) RankInv **',val:'ILM_Retina_BXD_F_RankInv1210'},
-{txt:'HEI Retina Males Illumina V6.2 (Dec10) RankInv **',val:'ILM_Retina_BXD_M_RankInv1210'},
-{txt:'HEI Retina F-M Illumina V6.2 (Dec10) RankInv **',val:'ILM_Retina_BXD_FM_RankInv1210'},
-{txt:'G2NEI Retina Illumina V6.2 (April 2010) RankInv **',val:'G2NEI_ILM_Retina_BXD_RI0410'},
{txt:'NCSU Drosophila Whole Body (Jan11) RMA',val:'NCSU_DrosWB_LC_RMA_0111'},
{txt:'UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females',val:'LV_G_0106_F'},
{txt:'UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males',val:'LV_G_0106_M'},
@@ -220,12 +216,12 @@ var dArr = [
{txt:'INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)',val:'INIA_Hyp_RMA_1110'},
{txt:'INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male',val:'INIA_Hyp_M_RMA_1110'},
{txt:'INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female',val:'INIA_Hyp_F_RMA_1110'},
-{txt:'UMUTAffy Hippocampus Exon (Feb09) RMA MDP',val:'UMUTAffyExon_0209_RMA_MDP'},
{txt:'UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA',val:'UTHSC_SPL_RMA_1010'},
{txt:'Hippocampus Consortium M430v2 (Jun06) RMA MDP',val:'HC_M2_0606_MDP'},
+{txt:'UMUTAffy Hippocampus Exon (Feb09) RMA MDP',val:'UMUTAffyExon_0209_RMA_MDP'},
{txt:'OX UK HS ILM6v1.1 Lung (May 2010) RankInv',val:'OXUKHS_ILMLung_RI0510'},
-{txt:'OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv',val:'OXUKHS_ILMHipp_RI0510'},
{txt:'OX UK HS ILM6v1.1 Liver (May 2010) RankInv',val:'OXUKHS_ILMLiver_RI0510'},
+{txt:'OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv',val:'OXUKHS_ILMHipp_RI0510'},
{txt:'INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA **',val:'INIA_MacFas_Pf_RMA_0110'},
{txt:'INIA Macaca fasicularis Brain (Jan10) RMA **',val:'INIA_MacFas_brain_RMA_0110'},
{txt:'UAB Whole body D.m. mRNA control (Oct09) RMA',val:'UAB_DrosWB_LC_RMA_1009'},
@@ -241,71 +237,71 @@ var dArr = [
{txt:'UTHSC CEPH B-cells Illumina (Sep09) RankInv',val:'UT_CEPH_RankInv0909'},
{txt:'Mouse kidney M430v2 Female (Aug06) RMA',val:'MA_M2F_0706_R'},
{txt:'Mouse kidney M430v2 Male (Aug06) RMA',val:'MA_M2M_0706_R'},
-{txt:'Barley1 Leaf INOC TTKS (Aug09) MAS5',val:'B1LI0809M5'},
{txt:'Barley1 Leaf INOC TTKS (Aug09) RMA',val:'B1LI0809R'},
+{txt:'Barley1 Leaf INOC TTKS (Aug09) MAS5',val:'B1LI0809M5'},
{txt:'Barley1 Leaf MOCK TTKS (Aug09) MAS5',val:'B1MI0809M5'},
{txt:'Barley1 Leaf MOCK TTKS (Aug09) RMA',val:'B1MI0809R'},
{txt:'GSE15222 Human Brain Myers (Apr09) RankInv',val:'GSE15222_F_RI_0409'},
{txt:'GSE5281 Human Brain Full Liang (Jul09) RMA',val:'GSE5281_F_RMA0709'},
{txt:'GSE5281 Human Brain Best 102 Liang (Jul09) RMA',val:'GSE5281_RMA0709'},
{txt:'UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA',val:'UT_HippRatEx_RMA_0709'},
-{txt:'VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **',val:'VCUEtvsSal_0609_R'},
-{txt:'VCU BXD VTA Sal M430 2.0 (Jun09) RMA **',val:'VCUSal_0609_R'},
{txt:'VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **',val:'VCUEtOH_0609_R'},
+{txt:'VCU BXD VTA Sal M430 2.0 (Jun09) RMA **',val:'VCUSal_0609_R'},
+{txt:'VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **',val:'VCUEtvsSal_0609_R'},
{txt:'IoP Affy MOE 430v2 Spleen (May09) RMA',val:'IoP_SPL_RMA_0509'},
{txt:'NCI Mammary M430v2 (Apr09) RMA',val:'NCI_Mam_Tum_RMA_0409'},
{txt:'NCI Mammary LMT miRNA v2 (Apr09) RMA',val:'NCI_Agil_Mam_Tum_RMA_0409'},
{txt:'MDC/CAS/UCL Liver 230v2 (Dec08) RMA',val:'HXB_Liver_1208'},
{txt:'MDC/CAS/UCL Heart 230_V2 (Dec08) RMA',val:'HXB_Heart_1208'},
{txt:'MDC/CAS/UCL Adrenal 230A (Dec08) RMA',val:'HXB_Adrenal_1208'},
-{txt:'UWA Illumina Spleen (Nov08) RSN **',val:'Illum_BXD_Spl_1108'},
-{txt:'UWA Illumina Thymus (Nov08) RSN **',val:'Illum_BXD_Thy_1108'},
{txt:'UWA Illumina PBL (Nov08) RSN **',val:'Illum_BXD_PBL_1108'},
+{txt:'UWA Illumina Thymus (Nov08) RSN **',val:'Illum_BXD_Thy_1108'},
+{txt:'UWA Illumina Spleen (Nov08) RSN **',val:'Illum_BXD_Spl_1108'},
{txt:'Monks CEPH B-cells Agilent (Dec04) Log10Ratio',val:'Human_1008'},
{txt:'UTK Spleen ILM6.1 (Jan10) VST',val:'UTK_BXDSpl_VST_0110'},
{txt:'Eye AXBXA Illumina V6.2(Oct08) RankInv Beta',val:'Eye_AXBXA_1008_RankInv'},
{txt:'Eye M430v2 (Sep08) RMA',val:'Eye_M2_0908_R'},
{txt:'Eye M430v2 Mutant Gpnmb (Sep08) RMA **',val:'Eye_M2_0908_R_NB'},
{txt:'Eye M430v2 WT Gpnmb (Sep08) RMA **',val:'Eye_M2_0908_R_ND'},
-{txt:'Eye M430v2 WT Tyrp1 (Sep08) RMA **',val:'Eye_M2_0908_R_WT'},
-{txt:'Eye M430v2 WT WT (Sep08) RMA **',val:'Eye_M2_0908_WTWT'},
{txt:'Eye M430v2 Mutant Tyrp1 (Sep08) RMA **',val:'Eye_M2_0908_R_MT'},
+{txt:'Eye M430v2 WT WT (Sep08) RMA **',val:'Eye_M2_0908_WTWT'},
+{txt:'Eye M430v2 WT Tyrp1 (Sep08) RMA **',val:'Eye_M2_0908_R_WT'},
{txt:'BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **',val:'BXD_GLA_0911'},
{txt:'UCLA BXH and BXD Cartilage v2',val:'UCLA_BXHBXD_CARTILAGE_V2'},
{txt:'UCLA BXD and BXH Cartilage v2',val:'UCLA_BXDBXH_CARTILAGE_V2'},
-{txt:'UCLA BXH and BXD Cartilage',val:'UCLA_BXHBXD_CARTILAGE'},
{txt:'UCLA BXD and BXH Cartilage',val:'UCLA_BXDBXH_CARTILAGE'},
-{txt:'UCLA BHF2 Liver Male mlratio',val:'UCLA_BHF2_LIVER_MALE'},
-{txt:'UCLA BHF2 Brain Female mlratio',val:'UCLA_BHF2_BRAIN_FEMALE'},
+{txt:'UCLA BXH and BXD Cartilage',val:'UCLA_BXHBXD_CARTILAGE'},
{txt:'UCLA BHF2 Brain Male mlratio',val:'UCLA_BHF2_BRAIN_MALE'},
+{txt:'UCLA BHF2 Brain Female mlratio',val:'UCLA_BHF2_BRAIN_FEMALE'},
{txt:'UCLA BHF2 Adipose Female mlratio',val:'UCLA_BHF2_ADIPOSE_FEMALE'},
{txt:'UCLA BHF2 Adipose Male mlratio',val:'UCLA_BHF2_ADIPOSE_MALE'},
+{txt:'UCLA CTB6B6CTF2 Muscle Male mlratio **',val:'UCLA_CTB6B6CTF2_MUSCLE_MALE'},
{txt:'UCLA CTB6B6CTF2 Liver Male mlratio **',val:'UCLA_CTB6B6CTF2_LIVER_MALE'},
-{txt:'UCLA CTB6B6CTF2 Adipose Male mlratio **',val:'UCLA_CTB6B6CTF2_ADIPOSE_MALE'},
{txt:'UCLA CTB6B6CTF2 Brain Male mlratio **',val:'UCLA_CTB6B6CTF2_BRAIN_MALE'},
-{txt:'UCLA CTB6B6CTF2 Muscle Male mlratio **',val:'UCLA_CTB6B6CTF2_MUSCLE_MALE'},
+{txt:'UCLA CTB6B6CTF2 Adipose Male mlratio **',val:'UCLA_CTB6B6CTF2_ADIPOSE_MALE'},
+{txt:'UCLA BHF2 Liver Male mlratio',val:'UCLA_BHF2_LIVER_MALE'},
{txt:'UCLA BHF2 Liver Female mlratio',val:'UCLA_BHF2_LIVER_FEMALE'},
-{txt:'UCLA BHHBF2 Muscle Female Only',val:'UCLA_BHHBF2_MUSCLE_FEMALE'},
{txt:'UCLA BHHBF2 Brain Female Only',val:'UCLA_BHHBF2_BRAIN_FEMALE'},
+{txt:'UCLA BHHBF2 Liver Female Only',val:'UCLA_BHHBF2_LIVER_FEMALE'},
+{txt:'UCLA BHHBF2 Muscle Male Only',val:'UCLA_BHHBF2_MUSCLE_MALE'},
+{txt:'UCLA BHHBF2 Muscle Female Only',val:'UCLA_BHHBF2_MUSCLE_FEMALE'},
+{txt:'UCLA BHHBF2 Liver Male Only',val:'UCLA_BHHBF2_LIVER_MALE'},
{txt:'UCLA BHHBF2 Brain Male Only',val:'UCLA_BHHBF2_BRAIN_MALE'},
{txt:'UCLA BHHBF2 Adipose Female Only',val:'UCLA_BHHBF2_ADIPOSE_FEMALE'},
{txt:'UCLA BHHBF2 Adipose Male Only',val:'UCLA_BHHBF2_ADIPOSE_MALE'},
{txt:'UCLA BHF2 Muscle Female mlratio **',val:'UCLA_BHF2_MUSCLE_FEMALE'},
{txt:'UCLA BHF2 Muscle Male mlratio **',val:'UCLA_BHF2_MUSCLE_MALE'},
-{txt:'UCLA BHHBF2 Liver Female Only',val:'UCLA_BHHBF2_LIVER_FEMALE'},
-{txt:'UCLA BHHBF2 Muscle Male Only',val:'UCLA_BHHBF2_MUSCLE_MALE'},
-{txt:'UCLA BHHBF2 Liver Male Only',val:'UCLA_BHHBF2_LIVER_MALE'},
-{txt:'UCLA BXD Cartilage',val:'UCLA_BXD_CARTILAGE'},
{txt:'UCLA BXH Cartilage',val:'UCLA_BXH_CARTILAGE'},
+{txt:'UCLA BXD Cartilage',val:'UCLA_BXD_CARTILAGE'},
+{txt:'UCLA BHHBF2 Adipose (2005) mlratio **',val:'UCLA_BHHBF2_ADIPOSE_2005'},
{txt:'UCLA BHHBF2 Brain (2005) mlratio **',val:'UCLA_BHHBF2_BRAIN_2005'},
{txt:'UCLA BHHBF2 Liver (2005) mlratio **',val:'UCLA_BHHBF2_LIVER_2005'},
{txt:'UCLA BHHBF2 Muscle (2005) mlratio **',val:'UCLA_BHHBF2_MUSCLE_2005'},
-{txt:'UCLA BHHBF2 Adipose (2005) mlratio **',val:'UCLA_BHHBF2_ADIPOSE_2005'},
{txt:'UCLA BHF2 Adipose (June05) mlratio',val:'UCLA_BHF2_ADIPOSE_0605'},
+{txt:'UCLA BDF2 Liver (1999) mlratio',val:'UCLA_BDF2_LIVER_1999'},
+{txt:'UCLA BHF2 Muscle (June05) mlratio **',val:'UCLA_BHF2_MUSCLE_0605'},
{txt:'UCLA BHF2 Brain (June05) mlratio',val:'UCLA_BHF2_BRAIN_0605'},
{txt:'UCLA BHF2 Liver (June05) mlratio',val:'UCLA_BHF2_LIVER_0605'},
-{txt:'UCLA BHF2 Muscle (June05) mlratio **',val:'UCLA_BHF2_MUSCLE_0605'},
-{txt:'UCLA BDF2 Liver (1999) mlratio',val:'UCLA_BDF2_LIVER_1999'},
{txt:'HZI Lung M430v2 (Apr08) RMA',val:'HZI_0408_R'},
{txt:'HZI Lung M430v2 (Apr08) MAS5',val:'HZI_0408_M'},
{txt:'HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv',val:'HQFNeoc_0208_RankInv'},
@@ -330,13 +326,13 @@ var dArr = [
{txt:'VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **',val:'VCUEtOH_0806_R'},
{txt:'VCU LXS PFC Sal M430A 2.0 (Aug06) RMA',val:'VCUSal_0806_R'},
{txt:'VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **',val:'VCUEt_vs_Sal_0806_R'},
-{txt:'Barley1 Leaf MAS 5.0 SCRI (Dec06)',val:'B30_K_1206_M'},
{txt:'Barley1 Embryo gcRMA SCRI (Dec06)',val:'B139_K_1206_R'},
+{txt:'Barley1 Leaf MAS 5.0 SCRI (Dec06)',val:'B30_K_1206_M'},
{txt:'Barley1 Leaf gcRMAn SCRI (Dec06)',val:'B30_K_1206_Rn'},
-{txt:'Barley1 Embryo MAS 5.0 SCRI (Dec06)',val:'B139_K_1206_M'},
{txt:'Barley1 Leaf gcRMA SCRI (Dec06)',val:'B30_K_1206_R'},
-{txt:'HZI Treg M430v2 (Feb11) RMA',val:'RTC_1106_R'},
+{txt:'Barley1 Embryo MAS 5.0 SCRI (Dec06)',val:'B139_K_1206_M'},
{txt:'UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA',val:'BR_M2_1106_R'},
+{txt:'HZI Treg M430v2 (Feb11) RMA',val:'RTC_1106_R'},
{txt:'UIOWA Eye mRNA RAE230v2 (Sep06) RMA',val:'UIOWA_Eye_RMA_0906'},
{txt:'Mouse kidney M430v2 Sex Balanced (Aug06) RMA',val:'MA_M2_0806_R'},
{txt:'Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN',val:'MA_M2_0806_P'},
@@ -347,8 +343,8 @@ var dArr = [
{txt:'Hippocampus Consortium M430v2 (Jun06) PDNN',val:'HC_M2_0606_P'},
{txt:'Hippocampus Consortium M430v2 (Jun06) MAS5',val:'HC_M2_0606_M'},
{txt:'Hippocampus Consortium M430v2 (Jun06) RMA',val:'HC_M2_0606_R'},
-{txt:'INIA Brain mRNA M430 (Jan06) PDNN',val:'IBR_M_0106_P'},
{txt:'INIA Brain mRNA M430 (Jan06) RMA',val:'IBR_M_0106_R'},
+{txt:'INIA Brain mRNA M430 (Jan06) PDNN',val:'IBR_M_0106_P'},
{txt:'Hippocampus Consortium M430v2 CXB (Dec05) RMA',val:'HC_M2CB_1205_R'},
{txt:'Hippocampus Consortium M430v2 CXB (Dec05) PDNN',val:'HC_M2CB_1205_P'},
{txt:'UTHSC Brain mRNA U74Av2 (Nov05) PDNN',val:'BR_U_1105_P'},
@@ -358,9 +354,9 @@ var dArr = [
{txt:'UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NOE_0909'},
{txt:'UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv',val:'UT_ILM_BXD_hipp_RSS_0909'},
{txt:'UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv',val:'UT_ILM_BXD_hipp_RSE_0909'},
-{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5',val:'SA_M2_0905_M'},
{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN',val:'SA_M2_0905_P'},
{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA',val:'SA_M2_0905_R'},
+{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5',val:'SA_M2_0905_M'},
{txt:'UTHSC Brain mRNA U74Av2 (Aug05) RMA',val:'BR_U_0805_R'},
{txt:'UTHSC Brain mRNA U74Av2 (Aug05) PDNN',val:'BR_U_0805_P'},
{txt:'UTHSC Brain mRNA U74Av2 (Aug05) MAS5',val:'BR_U_0805_M'},
@@ -370,9 +366,9 @@ var dArr = [
{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5',val:'BRF2_M_0805_M'},
{txt:'MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8',val:'FT_2A_0605_Rz'},
{txt:'HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean',val:'SA_M2_0405_MC'},
+{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN',val:'GCB_M2_0505_P'},
{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA',val:'GCB_M2_0505_R'},
{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5',val:'GCB_M2_0505_M'},
-{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN',val:'GCB_M2_0505_P'},
{txt:'MDC/CAS/ICL Kidney 230A (Apr05) MAS5',val:'KI_2A_0405_M'},
{txt:'HBP Rosen Striatum M430V2 (Apr05) RMA Clean',val:'SA_M2_0405_RC'},
{txt:'HBP Rosen Striatum M430V2 (Apr05) PDNN Clean',val:'SA_M2_0405_PC'},
@@ -380,33 +376,33 @@ var dArr = [
{txt:'HBP Rosen Striatum M430V2 (Apr05) RMA Orig',val:'SA_M2_0405_RR'},
{txt:'MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8',val:'KI_2A_0405_Rz'},
{txt:'MDC/CAS/ICL Kidney 230A (Apr05) RMA',val:'KI_2A_0405_R'},
-{txt:'SJUT Cerebellum mRNA M430 (Mar05) RMA',val:'CB_M_0305_R'},
-{txt:'SJUT Cerebellum mRNA M430 (Mar05) MAS5',val:'CB_M_0305_M'},
{txt:'SJUT Cerebellum mRNA M430 (Mar05) PDNN',val:'CB_M_0305_P'},
+{txt:'SJUT Cerebellum mRNA M430 (Mar05) MAS5',val:'CB_M_0305_M'},
+{txt:'SJUT Cerebellum mRNA M430 (Mar05) RMA',val:'CB_M_0305_R'},
{txt:'HQF Striatum Exon (Feb09) RMA',val:'Striatum_Exon_0209'},
-{txt:'BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **',val:'DevStriatum_ILM6.2P3RInv_1110'},
-{txt:'BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv',val:'DevNeocortex_ILM6.2P3RInv_1110'},
{txt:'BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv',val:'DevNeocortex_ILM6.2P14RInv_1110'},
{txt:'BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **',val:'DevStriatum_ILM6.2P14RInv_1110'},
+{txt:'BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **',val:'DevStriatum_ILM6.2P3RInv_1110'},
+{txt:'BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv',val:'DevNeocortex_ILM6.2P3RInv_1110'},
{txt:'SJUT Cerebellum mRNA M430 (Oct04) MAS5',val:'CB_M_1004_M'},
-{txt:'SJUT Cerebellum mRNA M430 (Oct04) RMA',val:'CB_M_1004_R'},
{txt:'SJUT Cerebellum mRNA M430 (Oct04) PDNN',val:'CB_M_1004_P'},
+{txt:'SJUT Cerebellum mRNA M430 (Oct04) RMA',val:'CB_M_1004_R'},
{txt:'(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5',val:'LVF2_M_0704_M'},
{txt:'(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA',val:'LVF2_M_0704_R'},
-{txt:'NCI Mammary mRNA M430 (July04) RMA',val:'MA_M_0704_R'},
{txt:'NCI Mammary mRNA M430 (July04) MAS5',val:'MA_M_0704_M'},
+{txt:'NCI Mammary mRNA M430 (July04) RMA',val:'MA_M_0704_R'},
{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN',val:'BRF2_M_0304_P'},
{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA',val:'BRF2_M_0304_R'},
-{txt:'GNF Stem Cells U74Av2 (Mar04) RMA',val:'HC_U_0304_R'},
{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5',val:'BRF2_M_0304_M'},
+{txt:'GNF Stem Cells U74Av2 (Mar04) RMA',val:'HC_U_0304_R'},
{txt:'INIA Brain mRNA M430 (Feb04) PDNN',val:'CB_M_0204_P'},
{txt:'SJUT Cerebellum mRNA M430 (Oct03) MAS5',val:'CB_M_1003_M'},
-{txt:'Hippocampus Illumina NON (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NON_1008'},
+{txt:'Hippocampus Illumina NOS (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOS_1008'},
{txt:'Hippocampus Illumina RSE (Oct08) RankInv beta',val:'Illum_LXS_Hipp_RSE_1008'},
{txt:'GSE9588 Human Liver Normal (Mar11) Females',val:'HLCF_0311'},
-{txt:'Hippocampus Illumina NOE (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOE_1008'},
-{txt:'Hippocampus Illumina NOS (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOS_1008'},
{txt:'Hippocampus Illumina RSS (Oct08) RankInv beta',val:'Illum_LXS_Hipp_RSS_1008'},
+{txt:'Hippocampus Illumina NOE (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOE_1008'},
+{txt:'Hippocampus Illumina NON (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NON_1008'},
{txt:'CANDLE Published Phenotypes',val:'CANDLEPublish'},
{txt:'HLC Published Phenotypes',val:'HLCPublish'},
{txt:'AKXD Genotypes',val:'AKXDGeno'},
@@ -450,333 +446,329 @@ var lArr = [
null,
[1,1,4,79],
[1,1,4,80],
-[1,1,4,131],
-[1,1,4,132],
+[1,1,4,127],
+[1,1,4,128],
[1,2,4,1],
[1,2,4,2],
-[1,2,4,130],
-[1,14,59,292],
+[1,2,4,126],
+[1,14,59,288],
[1,14,34,32],
-[1,15,26,123],
-[1,15,26,146],
+[1,15,26,119],
+[1,15,26,142],
[1,21,8,60],
[1,21,8,61],
-[1,21,8,64],
-[1,21,8,68],
+[1,21,8,63],
+[1,21,8,67],
[1,21,42,62],
-[1,21,42,63],
+[1,21,42,65],
[1,21,42,66],
-[1,21,42,70],
-[1,21,46,65],
-[1,21,46,67],
-[1,21,46,69],
+[1,21,42,69],
+[1,21,46,64],
+[1,21,46,68],
+[1,21,46,70],
[1,21,46,71],
-[1,22,59,293],
+[1,22,59,289],
[1,22,24,76],
[1,22,24,77],
-[1,22,24,288],
-[1,25,3,54],
-[1,25,6,51],
-[1,25,7,53],
-[1,25,9,49],
-[1,25,10,52],
-[1,25,11,50],
-[1,25,14,48],
-[1,25,17,33],
-[1,25,19,57],
-[1,25,21,58],
-[1,25,28,37],
-[1,25,29,34],
-[1,25,30,46],
-[1,25,36,38],
-[1,25,37,43],
-[1,25,38,44],
-[1,25,40,56],
-[1,25,41,47],
-[1,25,43,55],
-[1,25,44,59],
-[1,25,45,45],
-[1,25,46,39],
-[1,25,49,42],
-[1,25,52,41],
-[1,25,54,40],
-[1,25,55,36],
-[1,25,57,35],
-[2,30,3,13],
-[2,30,4,112],
-[2,30,17,5],
-[2,30,35,3],
-[2,30,42,111],
-[3,3,60,294],
-[3,3,27,139],
-[3,3,27,278],
-[3,3,27,279],
-[3,4,59,295],
-[3,4,60,296],
-[3,4,13,148],
-[3,5,59,297],
-[3,5,60,298],
-[3,5,24,276],
-[3,5,24,277],
-[3,6,60,299],
-[3,6,4,250],
-[3,6,4,251],
-[3,6,4,252],
-[3,6,4,280],
-[3,6,4,281],
-[3,6,4,283],
-[3,8,60,300],
-[3,8,24,190],
-[3,9,60,301],
-[3,9,49,243],
-[3,9,49,244],
-[3,9,49,245],
-[3,10,60,302],
-[3,10,1,163],
-[3,10,1,164],
-[3,10,1,186],
-[3,10,4,161],
-[3,10,4,162],
-[3,10,4,187],
-[3,10,24,160],
-[3,10,24,169],
-[3,10,24,188],
+[1,22,24,284],
+[1,25,3,33],
+[1,25,6,37],
+[1,25,7,36],
+[1,25,9,54],
+[1,25,10,56],
+[1,25,11,53],
+[1,25,14,38],
+[1,25,17,51],
+[1,25,19,46],
+[1,25,21,47],
+[1,25,28,55],
+[1,25,29,52],
+[1,25,30,49],
+[1,25,36,58],
+[1,25,37,59],
+[1,25,38,57],
+[1,25,40,50],
+[1,25,41,45],
+[1,25,43,34],
+[1,25,44,48],
+[1,25,45,39],
+[1,25,46,42],
+[1,25,49,40],
+[1,25,52,35],
+[1,25,54,41],
+[1,25,55,43],
+[1,25,57,44],
+[2,30,3,14],
+[2,30,4,108],
+[2,30,17,12],
+[2,30,35,7],
+[2,30,42,107],
+[3,3,60,290],
+[3,3,27,135],
+[3,3,27,274],
+[3,3,27,275],
+[3,4,59,291],
+[3,4,60,292],
+[3,4,13,144],
+[3,5,59,293],
+[3,5,60,294],
+[3,5,24,272],
+[3,5,24,273],
+[3,6,60,295],
+[3,6,4,246],
+[3,6,4,247],
+[3,6,4,248],
+[3,6,4,276],
+[3,6,4,277],
+[3,6,4,278],
+[3,8,60,296],
+[3,8,24,183],
+[3,9,60,297],
+[3,9,49,239],
+[3,9,49,240],
+[3,9,49,241],
+[3,10,60,298],
+[3,10,1,158],
+[3,10,1,159],
+[3,10,1,182],
+[3,10,4,156],
+[3,10,4,157],
+[3,10,4,185],
+[3,10,24,164],
+[3,10,24,165],
+[3,10,24,186],
+[3,10,32,174],
[3,10,32,175],
-[3,10,32,176],
-[3,10,32,189],
-[3,11,60,303],
+[3,10,32,184],
+[3,11,60,299],
+[3,11,1,172],
[3,11,1,173],
-[3,11,1,174],
-[3,11,1,185],
+[3,11,1,178],
+[3,11,4,166],
[3,11,4,171],
-[3,11,4,172],
-[3,11,4,182],
-[3,11,24,177],
-[3,11,24,179],
-[3,11,24,183],
-[3,11,32,170],
-[3,11,32,178],
-[3,11,32,184],
-[3,12,59,304],
-[3,12,60,305],
+[3,11,4,179],
+[3,11,24,167],
+[3,11,24,170],
+[3,11,24,180],
+[3,11,32,168],
+[3,11,32,169],
+[3,11,32,181],
+[3,12,59,300],
+[3,12,60,301],
[3,12,3,72],
[3,12,3,73],
[3,12,3,74],
[3,12,3,75],
-[3,12,4,221],
+[3,12,4,216],
+[3,12,4,224],
[3,12,4,228],
+[3,12,4,229],
[3,12,4,232],
-[3,12,4,233],
-[3,12,4,236],
-[3,12,4,246],
-[3,12,4,247],
-[3,12,4,248],
-[3,12,4,284],
-[3,12,5,157],
-[3,12,5,159],
-[3,12,5,180],
-[3,12,8,255],
-[3,12,8,256],
-[3,12,8,257],
-[3,12,8,265],
-[3,12,8,266],
-[3,12,8,267],
-[3,12,8,273],
-[3,12,8,274],
-[3,12,8,275],
-[3,12,8,285],
+[3,12,4,242],
+[3,12,4,243],
+[3,12,4,244],
+[3,12,4,280],
+[3,12,5,153],
+[3,12,5,154],
+[3,12,5,177],
+[3,12,8,251],
+[3,12,8,252],
+[3,12,8,253],
+[3,12,8,261],
+[3,12,8,262],
+[3,12,8,263],
+[3,12,8,269],
+[3,12,8,270],
+[3,12,8,271],
+[3,12,8,281],
+[3,12,13,145],
+[3,12,13,146],
+[3,12,13,147],
+[3,12,13,148],
[3,12,13,149],
[3,12,13,150],
[3,12,13,151],
-[3,12,13,152],
-[3,12,13,153],
-[3,12,13,154],
-[3,12,13,155],
+[3,12,16,111],
+[3,12,16,112],
+[3,12,16,113],
+[3,12,16,114],
[3,12,16,115],
[3,12,16,116],
[3,12,16,117],
[3,12,16,118],
-[3,12,16,119],
-[3,12,16,120],
-[3,12,16,121],
-[3,12,16,122],
-[3,12,16,282],
-[3,12,17,229],
-[3,12,17,230],
-[3,12,17,231],
+[3,12,16,279],
+[3,12,17,225],
+[3,12,17,226],
+[3,12,17,227],
+[3,12,17,233],
+[3,12,17,234],
+[3,12,17,235],
+[3,12,17,236],
[3,12,17,237],
[3,12,17,238],
-[3,12,17,239],
-[3,12,17,240],
-[3,12,17,241],
-[3,12,17,242],
-[3,12,18,102],
-[3,12,18,103],
-[3,12,18,104],
-[3,12,20,124],
-[3,12,20,125],
-[3,12,20,223],
-[3,12,20,224],
-[3,12,20,225],
-[3,12,20,226],
-[3,12,23,145],
-[3,12,24,15],
+[3,12,18,98],
+[3,12,18,99],
+[3,12,18,100],
+[3,12,20,120],
+[3,12,20,121],
+[3,12,20,219],
+[3,12,20,220],
+[3,12,20,221],
+[3,12,20,222],
+[3,12,23,139],
+[3,12,24,19],
+[3,12,24,83],
+[3,12,24,84],
+[3,12,24,85],
+[3,12,24,86],
[3,12,24,87],
[3,12,24,88],
[3,12,24,89],
[3,12,24,90],
[3,12,24,91],
[3,12,24,92],
-[3,12,24,93],
-[3,12,24,94],
-[3,12,24,95],
-[3,12,24,96],
-[3,12,25,191],
-[3,12,25,192],
-[3,12,31,14],
-[3,12,32,16],
-[3,12,32,17],
-[3,12,32,18],
-[3,12,33,21],
-[3,12,33,22],
-[3,12,33,99],
-[3,12,33,101],
-[3,12,33,193],
-[3,12,33,270],
-[3,12,33,271],
-[3,12,35,194],
-[3,12,35,195],
-[3,12,35,196],
+[3,12,25,187],
+[3,12,25,188],
+[3,12,31,18],
+[3,12,32,20],
+[3,12,32,21],
+[3,12,32,22],
+[3,12,33,25],
+[3,12,33,26],
+[3,12,33,95],
+[3,12,33,97],
+[3,12,33,189],
+[3,12,33,265],
+[3,12,33,268],
+[3,12,35,190],
+[3,12,35,191],
+[3,12,35,192],
+[3,12,42,201],
+[3,12,42,202],
+[3,12,42,203],
+[3,12,42,204],
[3,12,42,205],
[3,12,42,206],
-[3,12,42,207],
-[3,12,42,208],
-[3,12,42,209],
-[3,12,42,210],
-[3,12,47,23],
-[3,12,47,24],
-[3,12,47,25],
-[3,12,47,26],
+[3,12,47,3],
+[3,12,47,4],
+[3,12,47,5],
+[3,12,47,6],
[3,12,47,27],
[3,12,47,28],
-[3,12,47,82],
-[3,12,47,83],
-[3,12,47,84],
-[3,12,47,85],
-[3,12,48,100],
-[3,12,48,106],
-[3,12,48,137],
+[3,12,48,96],
+[3,12,48,101],
+[3,12,48,133],
+[3,12,48,141],
[3,12,48,143],
-[3,12,48,147],
-[3,12,49,19],
-[3,12,49,20],
-[3,12,49,97],
-[3,12,49,98],
-[3,12,49,198],
-[3,12,49,254],
-[3,12,49,259],
-[3,12,49,260],
-[3,12,49,261],
-[3,12,49,262],
-[3,12,49,268],
-[3,12,49,269],
-[3,12,49,272],
+[3,12,49,23],
+[3,12,49,24],
+[3,12,49,93],
+[3,12,49,94],
+[3,12,49,194],
+[3,12,49,250],
+[3,12,49,255],
+[3,12,49,256],
+[3,12,49,257],
+[3,12,49,258],
+[3,12,49,264],
+[3,12,49,266],
+[3,12,49,267],
[3,12,50,78],
-[3,12,51,220],
-[3,12,53,144],
-[3,12,56,134],
-[3,12,56,135],
-[3,12,56,136],
-[3,13,59,306],
-[3,13,60,307],
-[3,13,5,156],
-[3,13,5,158],
-[3,13,5,181],
-[3,18,59,308],
-[3,18,60,309],
-[3,18,1,8],
+[3,12,51,217],
+[3,12,53,140],
+[3,12,56,130],
+[3,12,56,131],
+[3,12,56,132],
+[3,13,59,302],
+[3,13,60,303],
+[3,13,5,152],
+[3,13,5,155],
+[3,13,5,176],
+[3,18,59,304],
+[3,18,60,305],
[3,18,1,9],
-[3,18,1,166],
-[3,18,4,4],
+[3,18,1,15],
+[3,18,1,163],
[3,18,4,10],
-[3,18,4,167],
-[3,18,24,6],
-[3,18,24,12],
-[3,18,24,165],
-[3,18,32,7],
+[3,18,4,16],
+[3,18,4,162],
+[3,18,24,8],
+[3,18,24,17],
+[3,18,24,161],
[3,18,32,11],
-[3,18,32,168],
-[3,19,59,310],
-[3,19,60,311],
-[3,19,17,234],
-[3,19,17,235],
-[3,19,48,197],
-[3,23,17,109],
-[3,23,24,110],
-[3,23,25,108],
+[3,18,32,13],
+[3,18,32,160],
+[3,19,59,306],
+[3,19,60,307],
+[3,19,17,230],
+[3,19,17,231],
+[3,19,48,193],
+[3,23,17,106],
+[3,23,24,105],
+[3,23,25,104],
[3,24,49,81],
-[3,29,59,312],
-[3,29,60,313],
+[3,29,59,308],
+[3,29,60,309],
+[3,29,17,195],
+[3,29,17,196],
+[3,29,17,197],
+[3,29,17,198],
[3,29,17,199],
[3,29,17,200],
-[3,29,17,201],
-[3,29,17,202],
-[3,29,17,203],
-[3,29,17,204],
-[3,29,17,211],
+[3,29,17,207],
+[3,29,17,282],
+[3,29,17,283],
+[3,29,17,285],
[3,29,17,286],
[3,29,17,287],
-[3,29,17,289],
-[3,29,17,290],
-[3,29,17,291],
-[3,29,42,212],
-[3,29,42,213],
-[3,29,42,214],
-[3,31,59,314],
-[3,31,60,315],
-[3,31,17,105],
-[3,31,17,107],
+[3,29,42,208],
+[3,29,42,209],
+[3,29,42,210],
+[3,31,59,310],
+[3,31,60,311],
+[3,31,17,102],
+[3,31,17,103],
[3,31,24,29],
[3,31,24,30],
[3,31,24,31],
-[3,32,59,316],
-[3,32,27,138],
-[4,26,59,317],
-[4,26,60,318],
-[4,26,2,142],
-[4,26,15,141],
-[4,26,17,133],
-[4,26,20,258],
-[4,26,20,263],
-[4,26,20,264],
-[4,26,24,140],
+[3,32,59,312],
+[3,32,27,134],
+[4,26,59,313],
+[4,26,60,314],
+[4,26,2,138],
+[4,26,15,137],
+[4,26,17,129],
+[4,26,20,254],
+[4,26,20,259],
+[4,26,20,260],
+[4,26,24,136],
+[4,26,39,245],
[4,26,39,249],
-[4,26,39,253],
-[4,35,13,222],
-[5,20,58,86],
-[5,33,58,113],
-[5,33,58,114],
-[6,7,59,319],
-[6,7,60,320],
-[6,16,59,321],
-[6,16,60,322],
-[6,17,59,323],
-[6,17,60,324],
-[7,34,22,126],
-[7,34,22,127],
-[7,34,22,128],
-[7,34,22,129],
-[7,36,59,325],
-[7,36,60,326],
-[7,36,12,216],
-[7,36,12,218],
-[7,36,12,227],
-[7,36,22,215],
-[7,36,22,217],
-[7,36,22,219],
-[8,27,59,327],
-[9,28,59,328],
-[10,37,59,329]];
+[4,35,13,218],
+[5,20,58,82],
+[5,33,58,109],
+[5,33,58,110],
+[6,7,59,315],
+[6,7,60,316],
+[6,16,59,317],
+[6,16,60,318],
+[6,17,59,319],
+[6,17,60,320],
+[7,34,22,122],
+[7,34,22,123],
+[7,34,22,124],
+[7,34,22,125],
+[7,36,59,321],
+[7,36,60,322],
+[7,36,12,211],
+[7,36,12,215],
+[7,36,12,223],
+[7,36,22,212],
+[7,36,22,213],
+[7,36,22,214],
+[8,27,59,323],
+[9,28,59,324],
+[10,37,59,325]];
diff --git a/web/javascript/webqtl.js b/web/javascript/webqtl.js
index 19ecf3b7..536e7d26 100755
--- a/web/javascript/webqtl.js
+++ b/web/javascript/webqtl.js
@@ -38,16 +38,16 @@ function makeTree(thisForm, nnn){
j += 1;
}
}
-
+
var windowName = 'formTarget' + (new Date().getTime());
var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1");
var html = "";
if (j > 0)
- {
+ {
var waithtml1 ="<Blockquote class='title' id='red'>Your list of "+j+" transcripts is being exported to the Gene Ontology Tree Machine for analysis. This window will soon be replaced with the main GOTM results.</Blockquote>";
}
else
- {
+ {
var waithtml1 ="<Blockquote class='title' id='red'>Your should select at least one transcript to export to the Gene Ontology Tree Machine for analysis.</Blockquote>";
}
html += waithtml1;
@@ -152,7 +152,11 @@ function showDatabase3(formName, Database,ProbeSetID,CellID){
document[formName].database.value = Database;
document[formName].ProbeSetID.value = ProbeSetID;
document[formName].CellID.value = CellID;
- document[formName].submit();
+ console.log("formName:", formName)
+ console.log("document[formName]:", document[formName])
+ console.log("submit turned off for debugging")
+ console.log("showDatabase3 is deprecated for the flask version of this site")
+ //document[formName].submit();
}
@@ -188,10 +192,10 @@ function showTrait(fmName){
var thisForm = getForm(fmName);
if (thisForm == null || showTrait.arguments.length < 2)
return;
-
+
windowName = genNewWin();
thisForm.target = windowName;
-
+
thisForm.FormID.value = "showDatabase";
thisForm.ProbeSetID.value = showTrait.arguments[1];
if (showTrait.arguments.length > 2)
@@ -205,10 +209,10 @@ function showCateGraph(fmName){
var thisForm = getForm(fmName);
if (thisForm == null || showCateGraph.arguments.length < 2)
return;
-
+
windowName = genNewWin();
thisForm.target = windowName;
-
+
thisForm.FormID.value = "showCategoryGraph";
thisForm.interval1.value = showCateGraph.arguments[1];
thisForm.interval2.value = showCateGraph.arguments[2];
@@ -219,22 +223,22 @@ function showCorrPlot(fmName){
var thisForm = getForm(fmName);
if (thisForm == null || showCorrPlot.arguments.length < 2)
return;
-
+
windowName = genNewWin();
thisForm.target = windowName;
-
+
thisForm.FormID.value = "showCorrelationPlot";
thisForm.ProbeSetID.value = showCorrPlot.arguments[1];
if (showCorrPlot.arguments.length > 2)
thisForm.CellID.value = showCorrPlot.arguments[2];
else
thisForm.CellID.value = "";
-
+
thisForm.X_geneSymbol.value = null;
thisForm.Y_geneSymbol.value = null;
thisForm.submit();
-
+
}
@@ -242,12 +246,12 @@ function showCorrPlotThird(fmName){
var thisForm = getForm(fmName);
if (thisForm == null || showCorrPlotThird.arguments.length < 3)
return;
-
+
windowName = genNewWin();
thisForm.target = windowName;
-
+
var olddb = thisForm.database.value;
-
+
thisForm.FormID.value = "showCorrelationPlot";
thisForm.database.value = showCorrPlotThird.arguments[1];
thisForm.ProbeSetID.value = showCorrPlotThird.arguments[2];
@@ -284,15 +288,15 @@ function ODE(thisForm, script){
var windowName = 'formTarget' + (new Date().getTime());
var newWindow = open("", windowName, "width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1");
var html = "";
- if (j == 0){
+ if (j == 0){
j = length;
trait_list2 = trait_list_all;
correlation2 = correlation_all;
llid_list2 = llid_list_all;
}
-
+
var waithtml1 ="<Blockquote class='title' id='red'>Your list of "+j+" transcripts is being exported to the ODE for analysis. This window will soon be replaced with the results.</Blockquote>";
-
+
html += waithtml1;
newWindow.document.write(html);
newWindow.document.close();
@@ -302,14 +306,14 @@ function ODE(thisForm, script){
thisForm.correlation.value = correlation2.join(',');
thisForm.id_value.value = thisForm.correlation.value;
thisForm.llid_list.value = llid_list2.join(',');
-
+
// ODE
-
+
thisForm.idtype.value = thisForm.id_type.value;
thisForm.species.value = thisForm.org.value;
thisForm.list.value = thisForm.id_list.value;
thisForm.client.value = "genenetwork";
-
+
thisForm.target = windowName;
var oldaction = thisForm.action;
thisForm.action = script;
@@ -318,13 +322,13 @@ function ODE(thisForm, script){
}
}
*/
-// 02/12/2009
+// 02/12/2009
// Lei Yan
/*scripts in the Dataediting form*/
function dataEditingFunc(thisForm,submitIdValue){
-
+
windowName = 'formTarget' + (new Date().getTime());
if (thisForm.FormID.value!='secondRegression'){
@@ -336,7 +340,7 @@ function dataEditingFunc(thisForm,submitIdValue){
}
else if (submitIdValue == "addRecord"){
- windowName = thisForm.RISet.value;
+ windowName = thisForm.RISet.value;
var name = thisForm.identification.value;
if (name != ""){
}
@@ -352,7 +356,7 @@ function dataEditingFunc(thisForm,submitIdValue){
newWindow = open("",windowName,"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900");
thisForm.target = windowName;
- newWindow.focus();
+ newWindow.focus();
thisForm.submitID.value = submitIdValue;
thisForm.submit();
}
@@ -394,7 +398,7 @@ function addRmvSelection(windowName, thisForm, addORrmv){
thisForm.target = windowName;
thisForm.FormID.value = addORrmv;
thisForm.submit();
- newWindow.focus();
+ newWindow.focus();
}
function batchSelection(thisForm){
@@ -424,7 +428,7 @@ function showTop10(formName, submitIdValue){
if ((submitIdValue == "markerRegression")||(submitIdValue == "compositeRegression")){
thisForm.topten.value = "topten";
}
-
+
thisForm.submitID.value = submitIdValue;
thisForm.submit();
}
@@ -441,12 +445,12 @@ function showIndividualChromosome(formName, submitIdValue, ii){
}
if (match == 0)
return;
-
+
windowName = 'formTarget' + (new Date().getTime());
newWindow = open("",windowName,"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900");
newWindow.focus();
thisForm.target = windowName;
-
+
if (submitIdValue == "showIntMap"){
thisForm.chromosomes.value = ii;
}
@@ -529,10 +533,10 @@ function dataWindow(form){
}
-function xchange() {
+function xchange() {
var select = document.crossChoice.RISet;
var value = select.options[select.selectedIndex].value;
-
+
if (value !="BDAI") return;
document.crossChoice.variance.checked = false;
}
@@ -580,97 +584,97 @@ function crossinfo2(){
function checkWidth(){
var width = document.getElementsByName('plotSize')[0].value
-
+
if (width < 600) {
alert("Plot size is too small - setting size to 600")
document.getElementsByName('plotSize')[0].value = 600
- }
+ }
}
function changeLineColor(){
var lineColor = document.getElementsByName('lineColorSel')[0].value
-
+
document.getElementsByName('lineColor')[0].value = lineColor
}
function changeLineSize(){
var lineSize = document.getElementsByName('lineSizeSel')[0].value
-
+
document.getElementsByName('lineSize')[0].value = lineSize
}
function changeIdColor(){
var idColor = document.getElementsByName('idColorSel')[0].value
-
+
document.getElementsByName('idColor')[0].value = idColor
}
function changeIdFont(){
var idFont = document.getElementsByName('idFontSel')[0].value
-
+
document.getElementsByName('idFont')[0].value = idFont
}
function changeIdSize(){
var idSize = document.getElementsByName('idSizeSel')[0].value
-
+
document.getElementsByName('idSize')[0].value = idSize
}
function changeSymbolColor(){
var symbolColor = document.getElementsByName('colorSel')[0].value
-
+
document.getElementsByName('symbolColor')[0].value = symbolColor
}
function changeSymbol(){
var symbol = document.getElementsByName('symbolSel')[0].value
-
+
document.getElementsByName('symbol')[0].value = symbol
}
function changeFilled(){
var filled = document.getElementsByName('fillSel')[0].value
-
+
document.getElementsByName('filled')[0].value = filled
}
function changeSize(){
var symbolSize = document.getElementsByName('sizeSel')[0].value
-
+
document.getElementsByName('symbolSize')[0].value = symbolSize
}
-function checkAll(thisForm){
+function checkAll(thisForm){
var length = thisForm.searchResult.length;
for(var i = 0; i < length; i++)
{
thisForm.searchResult[i].checked = true;
highlight(thisForm.searchResult[i]);
}
-}
+}
-function checkNone(thisForm){
+function checkNone(thisForm){
var length = thisForm.searchResult.length;
for(var i = 0; i < length; i++)
{
thisForm.searchResult[i].checked = false;
highlight(thisForm.searchResult[i]);
}
-}
+}
-function checkInvert(thisForm){
+function checkInvert(thisForm){
var length = thisForm.searchResult.length;
for(var i = 0; i < length; i++)
{
thisForm.searchResult[i].checked = !(thisForm.searchResult[i].checked);
highlight(thisForm.searchResult[i]);
}
-}
+}
/*Not used anymore*/
-function checkTraits2(thisForm){
+function checkTraits2(thisForm){
var length = thisForm.searchResult.length;
var category = thisForm.selectmenu.value;
for(var i = 0; i < length; i++)
@@ -720,18 +724,18 @@ function checkTraits2(thisForm){
else
{}
}
-}
+}
function checkNumeric(field,limit,resetvalue,compares,fdname)
{
- pattern = /^-?[0-9]*\.?[0-9]*$/;
+ pattern = /^-?[0-9]*\.?[0-9]*$/;
if(pattern.test(field.value)==false)
{
alert("Not numeric in " + fdname);
field.value = resetvalue;
}
- else
+ else
{
if (compares == 'gthan') {
if(field.value > limit)
@@ -748,7 +752,7 @@ function checkNumeric(field,limit,resetvalue,compares,fdname)
}
}
-function checkTraits(thisForm){
+function checkTraits(thisForm){
var length = thisForm.searchResult.length;
var andor = thisForm.selectandor.value;
var gthan = parseFloat(thisForm.selectgt.value);
@@ -780,7 +784,7 @@ function checkTraits(thisForm){
}
-function checkPM(thisForm){
+function checkPM(thisForm){
var length = thisForm.searchResult.length;
for(var i = 0; i < length; i++)
{
@@ -792,8 +796,8 @@ function checkPM(thisForm){
{thisForm.searchResult[i].checked = false;}
highlight(thisForm.searchResult[i]);
}
-}
-function checkMM(thisForm){
+}
+function checkMM(thisForm){
var length = thisForm.searchResult.length;
for(var i = 0; i < length; i++)
{
@@ -804,14 +808,14 @@ function checkMM(thisForm){
{thisForm.searchResult[i].checked = false;}
highlight(thisForm.searchResult[i]);
}
-}
+}
-function directPermuAlert(thisForm){
- if (thisForm.directPermuCheckbox.checked){
- alert("Interaction permutation will take long time to compute.\n Check this box only when necessary.");
+function directPermuAlert(thisForm){
+ if (thisForm.directPermuCheckbox.checked){
+ alert("Interaction permutation will take long time to compute.\n Check this box only when necessary.");
}
-}
+}
function cliqueDatabase(pid){
var windowName = 'clique';
@@ -869,7 +873,7 @@ function snpbrowser_function_refresh() {
for (var i=1; i<document.newSNPPadding.exonfunction.length; i++) {
document.newSNPPadding.exonfunction.options[i].selected=false;
}
- }
+ }
}
function snpbrowser_domain_refresh() {
@@ -889,7 +893,7 @@ function showHideOptions() {
var options = document.getElementById("options");
var showOptions = document.getElementsByName("showOptions")[0];
var optionsButton = document.getElementsByName("optionsButton")[0];
-
+
if (showOptions.value == '0') {
showOptions.value = '1';
optionsButton.value = "Hide Options";
@@ -898,22 +902,22 @@ function showHideOptions() {
showOptions.value = '0';
optionsButton.value = "Show Options";
}
-
- options.style.display = (options.style.display != 'none' ? 'none' : '' );
+
+ options.style.display = (options.style.display != 'none' ? 'none' : '' );
}
function editPCAName(thisForm) {
var pcaTraits = document.getElementsByName("searchResult");
-
+
var nameArray = new Array();
-
+
for (j=1; j<=pcaTraits.length; j++){
var traitName = "pcaTrait" + String(j);
var pcaTrait = document.getElementById(traitName).childNodes[0].innerHTML;
var editID = "editName" + String(j);
var editName = document.getElementsByName(editID)[0].value;
var originalName = pcaTrait.split(":")[3];
-
+
if (editName.length < 1) {
nameArray.push(originalName);
}
@@ -921,13 +925,13 @@ function editPCAName(thisForm) {
nameArray.push(editName);
}
}
-
+
var newNames = nameArray.join(",");
-
+
thisForm.newNames.value = newNames;
thisForm.searchResult = thisForm.oldSearchResult;
thisForm.FormID.value = "corMatrix";
-
+
thisForm.submit();
}
@@ -950,7 +954,7 @@ function unknownChipError(chipName){
}
/*
-Used by PartialCorrInputPage.py,
+Used by PartialCorrInputPage.py,
*/
function validateTrait(thisForm, inputRadioNames, type, method)
{
@@ -1029,7 +1033,7 @@ function validateTrait(thisForm, inputRadioNames, type, method)
}
}
-
+
}
/*
@@ -1044,7 +1048,7 @@ function changeView(i, Chr_Mb_list){
newWindow = open('',windowName,'menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900');
document.changeViewForm.target = windowName;
document.changeViewForm.chromosomes.selectedIndex = i+1;
- document.changeViewForm.startMb.value = '0.000000';
+ document.changeViewForm.startMb.value = '0.000000';
document.changeViewForm.endMb.value = Chr_Mb_list[i];
document.changeViewForm.graphWidth.value = 1280;
document.changeViewForm.submit();
@@ -1076,7 +1080,7 @@ used by networkGraphPageBody.py
function changeFormat(graphName){
var graphFormat = document.getElementById('exportFormat').value;
var traitType = document.getElementById('traitType').value;
-
+
if (graphFormat=="xgmml"){
if (traitType=="symbol"){
var graphname = graphName+ "_xgmml_symbol.txt";
@@ -1087,7 +1091,7 @@ function changeFormat(graphName){
document.getElementById('exportGraphFile').onclick = function() { window.open(graphname) };
}
}
-
+
else if (graphFormat=="plain")
{
if (traitType=="symbol")
@@ -1102,7 +1106,7 @@ function changeFormat(graphName){
}
}
-}
+}
/*
@@ -1126,13 +1130,13 @@ function set_customStrains_cookie() {
}
/*
-* moved from beta2.js
-*/
+* moved from beta2.js
+*/
function centerIntervalMapOnRange2(chr, start, stop, form) {
var oldindex = form.chromosomes.selectedIndex;
var oldstart = form.startMb.value;
var oldend = form.endMb.value;
-
+
for (var i = 1; i < form.chromosomes.length; i++){
if(form.chromosomes.options[i].text == chr){
form.chromosomes.selectedIndex = i;
@@ -1145,12 +1149,12 @@ function centerIntervalMapOnRange2(chr, start, stop, form) {
form.chromosomes.selectedIndex = oldindex;
form.startMb.value = oldstart;
form.endMb.value = oldend;
-
+
}
/*
-* moved from index3.html
-*/
+* moved from index3.html
+*/
String.prototype.trim = function(){
return this.replace(/(^\s*)|(\s*$)/g, "");
@@ -1282,13 +1286,13 @@ function showTissueCorrPlot(fmName,geneSymbol1, geneSymbol2,rank){
var thisForm = getForm(fmName);
if (thisForm == null || showTissueCorrPlot.arguments.length < 3)
return;
-
+
if (rank){
thisForm.rankOrder.value = rank;
}else{
thisForm.rankOrder.value = 0;
}
-
+
windowName = genNewWin();
thisForm.target = windowName;
@@ -1302,7 +1306,7 @@ function showTissueCorrPlot(fmName,geneSymbol1, geneSymbol2,rank){
if(typeof(thisForm.ProbeSetID2) !== 'undefined'){
thisForm.ProbeSetID2.value = 'none';
}
- thisForm.submit();
+ thisForm.submit();
}
/* Used by MarkerRegressionPage.py */
@@ -1317,7 +1321,7 @@ function validatePvalue(thisForm){
{
alert("Please enter numeric value.");
thisForm.pValue.focus();
- }
+ }
else if (pValue <0){
alert("Please enter the valid P-Value.");
thisForm.pValue.focus();
@@ -1327,7 +1331,7 @@ function validatePvalue(thisForm){
}
-
+
}
@@ -1338,9 +1342,9 @@ function showTissueAbbr(fmName,shortname, fullname){
thisForm.FormID.value = 'tissueAbbreviation';
thisForm.shortTissueName.value=shortname;
thisForm.fullTissueName.value=fullname;
-
+
thisForm.submit();
thisForm.FormID.value = 'showCorrelationPlot';
thisForm.target =''
-
+
}