diff options
Diffstat (limited to 'web/javascript')
| -rwxr-xr-x | web/javascript/header.js | 122 | ||||
| -rwxr-xr-x[-rw-r--r--] | web/javascript/jqueryFunction.js | 2041 | ||||
| -rw-r--r--[-rwxr-xr-x] | web/javascript/selectDatasetMenu.js | 0 | ||||
| -rwxr-xr-x | web/javascript/webqtl.js | 184 |
4 files changed, 1164 insertions, 1183 deletions
diff --git a/web/javascript/header.js b/web/javascript/header.js index 59fcacd8..65ba1bd6 100755 --- a/web/javascript/header.js +++ b/web/javascript/header.js @@ -1,62 +1,62 @@ -ctext = '' -ctext += '<TD width=30 rowSpan=5> </TD>' -ctext += '<TD bgColor=#ffffff NOWRAP="yes" width="100%" class="solidBorder">' -ctext += ' <Table width= "100%" cellSpacing=0 cellPadding=0>' -ctext += ' <TR>' -ctext += ' <TD width= "100%" id="smallsize">' -ctext += ' <a href="/">' -ctext += ' <IMG src="/images/upload/GeneNet_Banner2009c.png" border="0">' -ctext += ' </a>' -ctext += ' </TD>' -ctext += ' <TD valign="bottom">' -ctext += ' <A HREF="http://www.touchgraph.com/TGGoogleBrowser.php?start=genenetwork.org&signed=false" target="_blank">' -ctext += ' <IMG SRC="/images/upload/NetworkLogo.png" width="101" height="73" border="0">' -ctext += ' </a>' -ctext += ' </td>' -ctext += ' <TD valign="bottom">' -ctext += ' <IMG src="/images/webqtllogo2.gif" alt="WebQTL" border="0">' -ctext += ' </TD>' -ctext += ' </TR>' -ctext += ' </Table>' -ctext += '</TD>' -ctext += '<TD width="30" rowSpan=5> </TD>' -ctext += '</TR>' -ctext += '<TR>' -ctext += '<!--Home Help Search News Papers Policies Accounts Links-->' -ctext += '<TD bgColor=#ddddff NOWRAP="yes" class="solidBorder">' -ctext += '<table width="100%" cellSpacing=0 cellPadding=0 border=0>' -ctext += '<tr>' -ctext += '<td aligh=left NOWRAP="yes">' -ctext += ' | ' -ctext += '<Span Id= "menu_grp1" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp1\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp1\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<Strong>Home</Strong></Span>' -ctext += ' | ' -ctext += '<Span Id= "menu_grp2" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp2\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp2\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<Strong>Search</Strong></Span>' -ctext += ' | ' -ctext += '<Span Id= "menu_grp3" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp3\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp3\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<Strong>Help</Strong></Span>' -ctext += ' | ' -ctext += '<Span Id= "menu_grp4" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp4\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp4\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<A Href="/whats_new.html" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<Strong>News</Strong></A></Span>' -ctext += ' | ' -ctext += '<Span Id= "menu_grp5" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp5\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp5\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<A Href="/reference.html" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<Strong>References</Strong></A></Span>' -ctext += ' | ' -ctext += '<Span Id= "menu_grp6" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp6\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp6\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<Strong>Policies</Strong></Span>' -ctext += ' | ' -ctext += '<Span Id= "menu_grp8" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp8\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp8\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<A Href="/links.html" style="font-size:12px;font-family:verdana;color:#0000ae">' -ctext += '<Strong>Links</Strong></A></Span>' -ctext += ' | ' -ctext += '</td>' -ctext += '<td align="right" NOWRAP="yes">' -ctext += '<!-- %s --> ' -ctext += '</td>' -ctext += '</tr>' -ctext += '</table>' -ctext += '</TD>' +ctext = '' +ctext += '<TD width=30 rowSpan=5> </TD>' +ctext += '<TD bgColor=#ffffff NOWRAP="yes" width="100%" class="solidBorder">' +ctext += ' <Table width= "100%" cellSpacing=0 cellPadding=0>' +ctext += ' <TR>' +ctext += ' <TD width= "100%" id="smallsize">' +ctext += ' <a href="/">' +ctext += ' <IMG src="/images/upload/GeneNet_Banner2009c.png" border="0">' +ctext += ' </a>' +ctext += ' </TD>' +ctext += ' <TD valign="bottom">' +ctext += ' <A HREF="http://www.touchgraph.com/TGGoogleBrowser.php?start=genenetwork.org&signed=false" target="_blank">' +ctext += ' <IMG SRC="/images/upload/NetworkLogo.png" width="101" height="73" border="0">' +ctext += ' </a>' +ctext += ' </td>' +ctext += ' <TD valign="bottom">' +ctext += ' <IMG src="/images/webqtllogo2.gif" alt="WebQTL" border="0">' +ctext += ' </TD>' +ctext += ' </TR>' +ctext += ' </Table>' +ctext += '</TD>' +ctext += '<TD width="30" rowSpan=5> </TD>' +ctext += '</TR>' +ctext += '<TR>' +ctext += '<!--Home Help Search News Papers Policies Accounts Links-->' +ctext += '<TD bgColor=#ddddff NOWRAP="yes" class="solidBorder">' +ctext += '<table width="100%" cellSpacing=0 cellPadding=0 border=0>' +ctext += '<tr>' +ctext += '<td aligh=left NOWRAP="yes">' +ctext += ' | ' +ctext += '<Span Id= "menu_grp1" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp1\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp1\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<Strong>Home</Strong></Span>' +ctext += ' | ' +ctext += '<Span Id= "menu_grp2" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp2\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp2\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<Strong>Search</Strong></Span>' +ctext += ' | ' +ctext += '<Span Id= "menu_grp3" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp3\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp3\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<Strong>Help</Strong></Span>' +ctext += ' | ' +ctext += '<Span Id= "menu_grp4" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp4\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp4\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<A Href="/whats_new.html" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<Strong>News</Strong></A></Span>' +ctext += ' | ' +ctext += '<Span Id= "menu_grp5" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp5\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp5\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<A Href="/reference.html" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<Strong>References</Strong></A></Span>' +ctext += ' | ' +ctext += '<Span Id= "menu_grp6" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp6\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp6\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<Strong>Policies</Strong></Span>' +ctext += ' | ' +ctext += '<Span Id= "menu_grp8" onmouseover="A_MENUS[0].onmouseover(grpObj[\'menu_grp8\'])" onmouseout="A_MENUS[0].onmouseout(grpObj[\'menu_grp8\'])" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<A Href="/links.html" style="font-size:12px;font-family:verdana;color:#0000ae">' +ctext += '<Strong>Links</Strong></A></Span>' +ctext += ' | ' +ctext += '</td>' +ctext += '<td align="right" NOWRAP="yes">' +ctext += '<!-- %s --> ' +ctext += '</td>' +ctext += '</tr>' +ctext += '</table>' +ctext += '</TD>' document.write(ctext) \ No newline at end of file diff --git a/web/javascript/jqueryFunction.js b/web/javascript/jqueryFunction.js index 5e6641cd..e612098b 100644..100755 --- a/web/javascript/jqueryFunction.js +++ b/web/javascript/jqueryFunction.js @@ -1,80 +1,75 @@ /* jquery part */ - /* used by index (base/indexBody.py) */ - -$(document).ready(function(){ +$(document).ready(function () { options_visible = 0; //Whether advanced options are being shown - $('tr .advanced_option').hide(); - $('.toggle_advanced').click(function(){ + $('.toggle_advanced').click(function () { $('tr .advanced_option').toggle(); - - if (options_visible = 0) { - $('.full_search_td').css('display','none;'); - $('.search_td').css('display','inline'); - options_visible = 1; - } - else { - if ($('#type_menu.type_menu').val() = 'Hippocampus'){ - $('.search_td').css('display','none;'); - $('.full_search_td').css('display','inline'); - } - options_visible = 0; - } + + if (options_visible = 0) { + $('.full_search_td').css('display', 'none;'); + $('.search_td').css('display', 'inline'); + options_visible = 1; + } else { + if ($('#type_menu.type_menu').val() = 'Hippocampus') { + $('.search_td').css('display', 'none;'); + $('.full_search_td').css('display', 'inline'); + } + options_visible = 0; + } }); - $('#full_search').click(function(){ + $('#full_search').click(function () { gene_symbol = $('input[name=keyword]').val(); scriptable_interface_url = 'http://alexandria.uthsc.edu:89/webqtl/main.py?cmd=sch&gene=' + gene_symbol; - window.open(scriptable_interface_url,'_self'); + window.open(scriptable_interface_url, '_self'); }); }); -$('select.type_menu').live('change', function() { +$('select.type_menu').live('change', function () { var trait_type = $('select.type_menu option:selected').val(); - $('#tissue').val(trait_type); - $('#tissue').trigger('change'); + $('#tissue').val(trait_type); + $('#tissue').trigger('change'); }); /* used by CorrelationPage.py, AddToSelectionPage.py, and SearchResultPage.py */ -$(document).ready(function(){ - $('img[name=addselect], img[name=networkgraph], img[name=corrmatrix], img[name=partialCorr], img[name=comparecorr], img[name=mintmap], img[name=heatmap]').click(function(){ - if ($('input[name=searchResult]:checked').length < 1){ - for (i=0; i<10; i++){ - $('input[name=searchResult]:eq('+i+')').attr('checked',true); +$(document).ready(function () { + $('img[name=addselect], img[name=networkgraph], img[name=corrmatrix], img[name=partialCorr], img[name=comparecorr], img[name=mintmap], img[name=heatmap]').click(function () { + if ($('input[name=searchResult]:checked').length < 1) { + for (i = 0; i < 10; i++) { + $('input[name=searchResult]:eq(' + i + ')').attr('checked', true); } } }); - $('img[name=addselect]').click(function(){ - addRmvSelection($('input[name=RISet]').val(), document.getElementsByName('showDatabase'+ $('input[name=RISet]').val())[0], 'addToSelection'); + $('img[name=addselect]').click(function () { + addRmvSelection($('input[name=RISet]').val(), document.getElementsByName('showDatabase' + $('input[name=RISet]').val())[0], 'addToSelection'); }); - $('.toggleShowHide').click(function(){ + $('.toggleShowHide').click(function () { var className = '.extra_options'; - if ($(className).css('display') == 'none'){ - var less = 'less'; - $('input[name=showHideOptions]').val(less); + if ($(className).css('display') == 'none') { + var less = 'less'; + $('input[name=showHideOptions]').val(less); $(className).show(); $('input[name=options]').val('Fewer Options'); var display = $('input[name=options]').css('display') - $(display).val('block'); - } - else { - var more = 'more'; - $('input[name=showHideOptions]').val(more); - $(className).hide(); - $('input[name=options]').val('More Options'); - var display = $('input[name=showHideOptions]').css('display') - $(display).val('block'); + $(display).val('block'); + } else { + var more = 'more'; + $('input[name=showHideOptions]').val(more); + $(className).hide(); + $('input[name=options]').val('More Options'); + var display = $('input[name=showHideOptions]').css('display') + $(display).val('block'); } }); }); @@ -83,82 +78,91 @@ $(document).ready(function(){ used by AddToSelectionPage.py */ function validateTraitNumber() { - var checkBoxes = $('.checkallbox'); - if (checkBoxes.filter(":checked").length < 2) { - alert("Please select at least two traits."); - return false; - } - else { - return true; - } + var checkBoxes = $('.checkallbox'); + if (checkBoxes.filter(":checked").length < 2) { + alert("Please select at least two traits."); + return false; + } else { + return true; + } } /* used by TextSearchPage.py */ -$(document).ready(function(){ - - $('.add_traits').click(function(){ - $('input[name=searchResult]').each(function(){ - if ($(this).is(':checked')){ - groupName = $(this).parents().next().next().children('[href]').text(); - addORrmv = 'addToSelection'; - thisForm = $('form[name=showDatabase]'); - addRmvSelection_allGroups(groupName, thisForm, addORrmv); - } - }); - }); - - function addRmvSelection_allGroups(groupName, thisForm, addORrmv){ - thisForm.attr('target',groupName); - thisForm.children('input[name=FormID]:hidden').val(addORrmv); - thisForm.children('input[name=RISet]:hidden').val(groupName); - var newWindow = open("",thisForm.attr('target'),"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900"); - thisForm.submit(); - } - - $('.tab_content').hide(); //Hide all tab content - $('div.tab_container').each(function(){ - $(this).parent('td').find('div.tab_container:first').find('div.tab_content:first').show(); - }); - $('ul.tabs').each(function(){ - $(this).find('li:first').addClass('active'); - }); - $('ul.tabs:first').find('li:first').show(); - $('.tab_container:first').find('.tab_content:first').show(); - - //On Click Event - $('ul.tabs li').click(function() { - $('ul.tabs').find('li').removeClass('last_viewed'); - if($(this).parent('ul.tabs').next('div.tab_container').attr('id').indexOf('stats') != 1){ - $(this).addClass('last_viewed'); - } - $(this).parent('ul.tabs').find('li').removeClass('active'); - $(this).addClass('active'); - $(this).parent('ul.tabs').next('div.tab_container').find('.tab_content').hide(); - var activeTab = $(this).find('a').attr('href'); - if ($.browser.msie) - {$(activeTab).show();} - else - {$(activeTab).fadeIn();} //Fade in the active ID content - - return false; - }); +$(document).ready(function () { + + $('.add_traits').click(function () { + $('input[name=searchResult]').each(function () { + if ($(this).is(':checked')) { + groupName = $(this).parents().next().next().children('[href]').text(); + addORrmv = 'addToSelection'; + thisForm = $('form[name=showDatabase]'); + addRmvSelection_allGroups(groupName, thisForm, addORrmv); + } + }); + }); + + function addRmvSelection_allGroups(groupName, thisForm, addORrmv) { + thisForm.attr('target', groupName); + thisForm.children('input[name=FormID]:hidden').val(addORrmv); + thisForm.children('input[name=RISet]:hidden').val(groupName); + var newWindow = open("", thisForm.attr('target'), "menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900"); + thisForm.submit(); + } + + $('.tab_content').hide(); //Hide all tab content + $('div.tab_container').each(function () { + $(this).parent('td').find('div.tab_container:first').find('div.tab_content:first').show(); + }); + $('ul.tabs').each(function () { + $(this).find('li:first').addClass('active'); + }); + $('ul.tabs:first').find('li:first').show(); + $('.tab_container:first').find('.tab_content:first').show(); + + //On Click Event + $('ul.tabs li').click(function () { + $('ul.tabs').find('li').removeClass('last_viewed'); + if ($(this).parent('ul.tabs').next('div.tab_container').attr('id').indexOf('stats') != 1) { + $(this).addClass('last_viewed'); + } + $(this).parent('ul.tabs').find('li').removeClass('active'); + $(this).addClass('active'); + $(this).parent('ul.tabs').next('div.tab_container').find('.tab_content').hide(); + var activeTab = $(this).find('a').attr('href'); + if ($.browser.msie) { + $(activeTab).show(); + } else { + $(activeTab).fadeIn(); + } //Fade in the active ID content + return false; + }); }); /* used by DataEditingPage.py */ -$(document).ready(function() { +$(document).ready(function () { + + // ZS: This checks the number of columns in order to determine which column to not sort; in this case the plus-minus symbol shouldn't be sortable + $('#sortable1,#sortable2').find('th').each(function () { + if ($(this).text() == 'SE') { + $.tablesorter.defaults.headers = { + 3: { + sorter: false + } + }; + return false; + } + }); + + if ($('#sortable1,#sortable2').find('.outlier').size() > 0) { + $('input[name=sample_method]:eq(1)').attr('checked','checked'); + $('input[name=tissue_method]:eq(1)').attr('checked','checked'); + } - // ZS: This checks the number of columns in order to determine which column to not sort; in this case the plus-minus symbol shouldn't be sortable - $('#sortable1,#sortable2').find('th').each(function() { - if ($(this).text() == 'SE'){ - $.tablesorter.defaults.headers = { 3: {sorter: false} }; - return false; - } - }); /* ZS: This segment is called by tablesorter.js; it determines where to get the text used when sorting, based on the type of cell. @@ -167,949 +171,922 @@ $(document).ready(function() { This segment is repeated twice. Ideally this wouldn't be the case, but I can't find a way to reuse the inner textExtraction function. */ - //ZS: Defining these here, so they don't need to be searched for in the DOM for every single node - primaryTable = $("#sortable1"); - otherTable = $("#sortable2"); - - primaryValueHeader = primaryTable.find('th:contains("Value"):eq(0)'); - primarySEHeader = primaryTable.find('th:contains("SE"):eq(0)'); - otherValueHeader = otherTable.find('th:contains("Value"):eq(1)'); - otherSEHeader = otherTable.find('th:contains("SE"):eq(1)'); - - $("#sortable1").tablesorter({ - textExtraction: function(node) { - if ((node.children[0] == "[object HTMLInputElement]" && node.children[0].type == "text") || (/\S/.test(node.id))) { - cellId = node.id; - thisCell = $('#'+cellId).children(':eq(0)') - valueClassNames = thisCell.attr('class').split(/\s+/); - capitalized_column_name = cellId.split('_')[0].charAt(0).toUpperCase() + cellId.split('_')[0].slice(1); - value = valueClassNames[valueClassNames.length - 1]; - newValue = thisCell.val(); - - if (newValue == 'x' || value == '9999' || value == '-9999') { - valueType = cellId.split('_')[0]; - if (valueType == 'value'){ - header = primaryValueHeader; - } else { - header = primarySEHeader; - } - - if (header.hasClass('headerSortUp')){ - sort_order = 'desc'; - } else if (header.hasClass('headerSortDown')){ - sort_order = 'asc'; - } else { - sort_order = 'desc'; - } - - if (sort_order == 'desc') { - value = 9999; - thisCell.removeClass(value).addClass('9999'); - } else if (sort_order == 'asc'){ - value = -9999; - thisCell.removeClass(value).addClass('-9999'); - } else { - value = 9999; - thisCell.removeClass(value).addClass('9999'); - } - } - - text = value; - } - - else { - if (node.textContent) { - text = node.textContent; - } else { - if (node.childNodes[0] && node.childNodes[0].hasChildNodes()) { - text = node.childNodes[0].innerHTML; - } else { - text = node.innerText; - } - } - } - return text - } - }); - - $("#sortable2").tablesorter({ - textExtraction: function(node) { - if ((node.children[0] == "[object HTMLInputElement]" && node.children[0].type == "text") || (/\S/.test(node.id))) { - cellId = node.id; - thisCell = $('#'+cellId).children(':eq(0)') - valueClassNames = thisCell.attr('class').split(/\s+/); - capitalized_column_name = cellId.split('_')[0].charAt(0).toUpperCase() + cellId.split('_')[0].slice(1); - value = valueClassNames[valueClassNames.length - 1]; - newValue = thisCell.val(); - - if (newValue == 'x' || value == '9999' || value == '-9999') { - valueType = cellId.split('_')[0]; - if (valueType == 'value'){ - header = otherValueHeader; - } else { - header = otherSEHeader; - } - - if (header.hasClass('headerSortUp')){ - sort_order = 'desc'; - } else if (header.hasClass('headerSortDown')){ - sort_order = 'asc'; - } else { - sort_order = 'desc'; - } - - if (sort_order == 'desc') { - value = 9999; - thisCell.removeClass(value).addClass('9999'); - } else if (sort_order == 'asc'){ - value = -9999; - thisCell.removeClass(value).addClass('-9999'); - } else { - value = 9999; - thisCell.removeClass(value).addClass('9999'); - } - } - - text = value; - } - - else { - if (node.textContent) { - text = node.textContent; - } else { - if (node.childNodes[0] && node.childNodes[0].hasChildNodes()) { - text = node.childNodes[0].innerHTML; - } else { - text = node.innerText; - } - } - } - return text - } - }); + //ZS: Defining these here, so they don't need to be searched for in the DOM for every single node + primaryTable = $("#sortable1"); + otherTable = $("#sortable2"); + + primaryValueHeader = primaryTable.find('th:contains("Value"):eq(0)'); + primarySEHeader = primaryTable.find('th:contains("SE"):eq(0)'); + otherValueHeader = otherTable.find('th:contains("Value"):eq(1)'); + otherSEHeader = otherTable.find('th:contains("SE"):eq(1)'); + + $("#sortable1").tablesorter({ + textExtraction: function (node) { + if ((node.children[0] == "[object HTMLInputElement]" && node.children[0].type == "text") || (/\S/.test(node.id))) { + cellId = node.id; + thisCell = $('#' + cellId).children(':eq(0)') + valueClassNames = thisCell.attr('class').split(/\s+/); + capitalized_column_name = cellId.split('_')[0].charAt(0).toUpperCase() + cellId.split('_')[0].slice(1); + value = valueClassNames[valueClassNames.length - 1]; + newValue = thisCell.val(); + + if (newValue == 'x' || value == '9999' || value == '-9999') { + valueType = cellId.split('_')[0]; + if (valueType == 'value') { + header = primaryValueHeader; + } else { + header = primarySEHeader; + } + + if (header.hasClass('headerSortUp')) { + sort_order = 'desc'; + } else if (header.hasClass('headerSortDown')) { + sort_order = 'asc'; + } else { + sort_order = 'desc'; + } + + if (sort_order == 'desc') { + value = 9999; + thisCell.removeClass(value).addClass('9999'); + } else if (sort_order == 'asc') { + value = -9999; + thisCell.removeClass(value).addClass('-9999'); + } else { + value = 9999; + thisCell.removeClass(value).addClass('9999'); + } + } -/* + text = value; + } else { + if (node.textContent) { + text = node.textContent; + } else { + if (node.childNodes[0] && node.childNodes[0].hasChildNodes()) { + text = node.childNodes[0].innerHTML; + } else { + text = node.innerText; + } + } + } + return text + } + }); + + $("#sortable2").tablesorter({ + textExtraction: function (node) { + if ((node.children[0] == "[object HTMLInputElement]" && node.children[0].type == "text") || (/\S/.test(node.id))) { + cellId = node.id; + thisCell = $('#' + cellId).children(':eq(0)') + valueClassNames = thisCell.attr('class').split(/\s+/); + capitalized_column_name = cellId.split('_')[0].charAt(0).toUpperCase() + cellId.split('_')[0].slice(1); + value = valueClassNames[valueClassNames.length - 1]; + newValue = thisCell.val(); + + if (newValue == 'x' || value == '9999' || value == '-9999') { + valueType = cellId.split('_')[0]; + if (valueType == 'value') { + header = otherValueHeader; + } else { + header = otherSEHeader; + } + + if (header.hasClass('headerSortUp')) { + sort_order = 'desc'; + } else if (header.hasClass('headerSortDown')) { + sort_order = 'asc'; + } else { + sort_order = 'desc'; + } + + if (sort_order == 'desc') { + value = 9999; + thisCell.removeClass(value).addClass('9999'); + } else if (sort_order == 'asc') { + value = -9999; + thisCell.removeClass(value).addClass('-9999'); + } else { + value = 9999; + thisCell.removeClass(value).addClass('9999'); + } + } + + text = value; + } else { + if (node.textContent) { + text = node.textContent; + } else { + if (node.childNodes[0] && node.childNodes[0].hasChildNodes()) { + text = node.childNodes[0].innerHTML; + } else { + text = node.innerText; + } + } + } + return text + } + }); + + /* ZS: When the user changes the value in the text field, the new value is added as a class. This is because $('input[type=text]').val() gets the value attribute, which is always the default value, instead of the value property (which can be changed) */ - var thisTable = $('#sortable1,#sortable2'); - - thisTable.bind("update propertychange keyup input paste", function(e){ - - var target = e.target; - $target = $(target); - - if (target.nodeName.toLowerCase() == 'input'){ - thisClassNames = $target.attr('class').split(/\s+/); - valueClass = thisClassNames[thisClassNames.length - 1]; - newValue = $target.val(); - thisParent = $target.parent('td'); - thisParentId = thisParent.attr('id'); - - $target.removeClass(valueClass); - - if (newValue == 'x'){ - thisParent.parent('tr').addClass('blocked'); - } else { - $('#'+thisParentId).children('input.valueField:eq(0)').addClass(newValue); - } - } - }); - - //////////////////////////////////// - // Initially close tabs - //////////////////////////////////// - - thisForm = $('form[name="dataInput"]'); - - $('#sectionbody2').hide(); - $('#sectionbody3').hide(); - $('#sectionbody4').hide(); - - $('#title1').click(function() { - $('#sectionbody1').toggle(); - return false; - }); - $('#title2').click(function() { - $('#sectionbody2').toggle(); - return false; - }); - $('#title3').click(function() { - $('#sectionbody3').toggle(); - return false; - }); - $('#title4').click(function() { - $('#sectionbody4').toggle(); - return false; - }); - $('#title5').click(function() { - $('#sectionbody5').toggle(); - return false; - }); - - - - ////////////////////////////////////////////////////////////// - // Switch out + and - icon when you click each section header - ////////////////////////////////////////////////////////////// - - var expand_html = "<span class=\"expand_container\"> <IMG src=\"/images/Expand.gif\" alt=\"Expand\"></span>"; - var contract_html = "<span class=\"contract_container\"> <IMG src=\"/images/Contract.gif\" alt=\"Contract\"></span>"; - - $('#title2, #title3, #title4').prepend(expand_html).addClass('1'); - - $('#title1, #title5').prepend(contract_html).addClass('0'); - - for(i=1;i<=5;i++){ - $('#title'+i).click(function(){ - if ($(this).hasClass('0')) { - $(this).find('span').replaceWith(expand_html); - $(this).removeClass('0'); - $(this).addClass('1'); - } - else { - $(this).find('span').replaceWith(contract_html); - $(this).removeClass('1'); - $(this).addClass('0'); - } - }); - } - - // Exclude cases by attributes - - $('div.attribute_values:first').css('display', 'inline'); //Display the dropdown menu with the first attribute's distinct values - - $('select[name=exclude_menu]').change(function(){ - $('div.attribute_values').css('display', 'none'); //clear all other menus when a new attribute is selected - attribute = $(this).val(); - //attribute = $('select[name=exclude_menu]').val(); - menu = $('div.attribute_values').find('[name=\''+attribute+'\']'); - menu.parent().css('display', 'inline'); - }); - - primary_row_count = $('#primary').find('tr').length - 1; - other_row_count = $('#other').find('tr').length - 1; - - if (primary_row_count >= other_row_count) { - row_count = primary_row_count; - } - else { - row_count = other_row_count; - } - - $('div.attribute_values').children('select').change(function(){ - exclude_value = $(this).val(); - }); -}); - -$(window).load(function(){ - - //ZS: These are needed in a few places; looping through rows by index is faster than doing a "find" search - numPrimaryRows = $('#sortable1').find('tr').length; - numOtherRows = $('#sortable2').find('tr').length; - - -/////////////////////////////// -//Basic Statistics -/////////////////////////////// - - ///////////////////////////////////////////////////////////////// - // Hide unselected Basic Statistics tabs (when just BXD strains - // are selected, hide the results for all strains/non-BXD) - ///////////////////////////////////////////////////////////////// - - $('#stats_tabs1').hide(); - $('#stats_tabs2').hide(); - - $('#sectionbody2').find('select[name=stats_mdp]').change(function(){ - selected = $('#sectionbody2').find('select[name=stats_mdp] option:selected').val(); - for (i=0;i<=2;i++){ - $('#stats_tabs'+i).hide(); - } - $('#stats_tabs'+selected).show(); - }); - - //////////////////////////////////////////////////////////////////////// - // Select the same tab across each sample group (when a Box Plot is - // selected for BXD, switching to Non-BXD will also display a Box Plot) - ////////////./////////////////////////////////////////////////////////// - - var $tabs1 = $('#stats_tabs0').tabs(); - var $tabs2 = $('#stats_tabs1').tabs(); - var $tabs3 = $('#stats_tabs2').tabs(); - - $tabs1.tabs({ - show: function(event, ui) { - var selected = $tabs1.tabs('option','selected'); - $tabs2.tabs('select',selected); - $tabs3.tabs('select',selected); - } - }); - $tabs2.tabs({ - show: function(event, ui) { - var selected = $tabs2.tabs('option','selected'); - $tabs1.tabs('select',selected); - $tabs3.tabs('select',selected); - } - }); - $tabs3.tabs({ - show: function(event, ui) { - var selected = $tabs3.tabs('option','selected'); - $tabs1.tabs('select',selected); - $tabs2.tabs('select',selected); - } - }); - - -/////////////////////////////// -//Calculate Correlations -/////////////////////////////// - - $('#sectionbody3').find('input[name="sample_corr"]').click(function() { - dbValue = $('select[name=database1] option:selected').val(); - $('input[name=database]').val(dbValue); - criteriaValue = $('select[name=criteria1] option:selected').val(); - $('input[name=criteria]').val(criteriaValue); - MDPValue = $('select[name=MDPChoice1] option:selected').val(); - $('input[name=MDPChoice]').val(MDPValue); - - methodValue = $('input[name=sample_method]:checked').val(); - - //This simple method can be used now that 'method' is defaulted to None instead of '' - if (methodValue == "1"){ - $('input[name=method]').val('1'); - } - else{ - $('input[name=method]').val('2'); - } - - dataEditingFunc(this.form,'correlation'); - }); - - $('#sectionbody3').find('input[name="lit_corr"]').click(function() { - dbValue = $('select[name=database2] option:selected').val(); - $('input[name=database]').val(dbValue); - criteriaValue = $('select[name=criteria2] option:selected').val(); - $('input[name=criteria]').val(criteriaValue); - MDPValue = $('select[name=MDPChoice2] option:selected').val(); - $('input[name=MDPChoice]').val(MDPValue); - - $('input[name=method]').val('3'); - - dataEditingFunc(this.form,'correlation'); - }); - - $('#sectionbody3').find('input[name="tiss_corr"]').click(function() { - dbValue = $('select[name=database3] option:selected').val(); - $('input[name=database]').val(dbValue); - criteriaValue = $('select[name=criteria3] option:selected').val(); - $('input[name=criteria]').val(criteriaValue); - MDPValue = $('select[name=MDPChoice3] option:selected').val(); - $('input[name=MDPChoice]').val(MDPValue); - - methodValue = $('input[name=tissue_method]:checked').val(); - - if (methodValue == "4"){ - $('input[name=method]').val('4'); - } - else{ - $('input[name=method]').val('5'); - } - dataEditingFunc(this.form,'correlation'); - }); - -/////////////////////////////// -//Mapping Tools -/////////////////////////////// - - $('#sectionbody4').find('input[name=interval]').click(function() { - chrValue = $('select[name=chromosomes1] option:selected').val(); - $('input[name=chromosomes]').val(chrValue); - scaleValue = $('select[name=scale1] option:selected').val(); - $('input[name=scale]').val(scaleValue); - $('input[name=controlLocus]').val(''); - - //Changed the way permValue, bootValue, and parentsValue are acquired; before it was $(____).is(':checked'); - permValue = $('input[name=permCheck1]:checked').val(); - $('input[name=permCheck]').val(permValue); - - bootValue = $('input[name=bootCheck1]:checked').val(); - $('input[name=bootCheck]').val(bootValue); - - if ($('input[name=parentsf14regression1]:checked').length > 0){ - $('input[name=parentsf14regression]').val('on'); - } else { - $('input[name=parentsf14regression]').val('off'); - } - - varValue = $('input[name=applyVarianceSE1]:checked').val(); - $('input[name=applyVarianceSE]').val(varValue); - - dataEditingFunc(this.form,'intervalMap'); - }); - - var tiptext = "e.g., rs12345"; - controlLocus = $('#sectionbody4').find('input[name=controlLocus]'); - - if(controlLocus.val() == '' || controlLocus == tiptext) { - controlLocus.addClass('searchtip').val(tiptext); - } - - controlLocus.focus(function(e) { - if(controlLocus.val() == tiptext) { - controlLocus.val(''); - } - controlLocus.removeClass('searchtip'); - }); - - controlLocus.blur(function(e) { - if(controlLocus.val() == '') { - controlLocus.addClass('searchtip').val(tiptext); - } else if(controlLocus.val() == tiptext) { - controlLocus.addClass('searchtip'); - } else { - controlLocus.removeClass('searchtip'); - } - }); - - $('#sectionbody4').find('input[name=composite]').click(function() { - chrValue = $('select[name=chromosomes2] option:selected').val(); - $('input[name=chromosomes]').val(chrValue); - scaleValue = $('select[name=scale2] option:selected').val(); - $('input[name=scale]').val(scaleValue); - controlValue = controlLocus.val(); - if (controlValue != tiptext){ - controlLocus.val(controlValue); - } - else{ - controlLocus.val(''); - } - - //Changed the way permValue, bootValue, and parentsValue are acquired; before it was $(____).is(':checked'); - permValue = $('input[name=permCheck2]:checked').val(); - $('input[name=permCheck]').val(permValue); - - bootValue = $('input[name=bootCheck2]:checked').val(); - $('input[name=bootCheck]').val(bootValue); - - if ($('input[name=parentsf14regression3]:checked').length > 0){ - $('input[name=parentsf14regression]').val('on'); - } else { - $('input[name=parentsf14regression]').val('off'); - } - - dataEditingFunc(this.form,'intervalMap'); - - }); - - $('#sectionbody4').find('input[name=marker]').click(function() { - //Changed the way parentsValue is acquired; before it was $(____).is(':checked'); - if ($('input[name=parentsf14regression2]:checked').length > 0){ - $('input[name=parentsf14regression]').val('on'); - } else { - $('input[name=parentsf14regression]').val('off'); - } - - varValue = $('input[name=applyVarianceSE2]:checked').val(); - $('input[name=applyVarianceSE]').val(varValue); - - dataEditingFunc(this.form,'markerRegression'); - }); - -/////////////////////////////// -//Review and Edit Data -/////////////////////////////// - - $('input[name=excludeGroup]').click(function(){ - for (i = 1;i <= Math.max(primary_row_count,other_row_count)-1; i++){ - valueExists = 0; - $('#Primary_'+i+',#Other_'+i).children().each(function(){ - if ($(this).text() == exclude_value) { - $('#Primary_'+i+',#Other_'+i).addClass('blocked').find('input[type=text]').val('x'); - valueExists = 1; - return false; - } - }); - } - }); - - $('.update').click(function(){ - windowName = 'formTarget' + (new Date().getTime()); - newWindow = open("",windowName,"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=0,directories=1,width=900"); - document.dataInput.target = windowName; - document.dataInput.submitID.value = "basicStatistics"; - - primaryData = getTraitData()[0]; - otherData = getTraitData()[1]; - allData = getTraitData()[2]; - - if (otherData[0].length > 0) { - if ($('select[name="stats_mdp"] option:selected').val() == 0) { - document.dataInput.strainNames.value = allData[0].toString(); - document.dataInput.strainVals.value = allData[1].toString(); - document.dataInput.strainVars.value = allData[2].toString(); - } - else if ($('select[name="stats_mdp"] option:selected').val() == 1) { - document.dataInput.strainNames.value = primaryData[0].toString(); - document.dataInput.strainVals.value = primaryData[1].toString(); - document.dataInput.strainVars.value = primaryData[2].toString(); - } - else { - document.dataInput.strainNames.value = otherData[0].toString(); - document.dataInput.strainVals.value = otherData[1].toString(); - document.dataInput.strainVars.value = otherData[2].toString(); - } - } - else { - document.dataInput.strainNames.value = allData[0].toString(); - document.dataInput.strainVals.value = allData[1].toString(); - document.dataInput.strainVars.value = allData[2].toString(); - } - - document.dataInput.submit(); - }); - - $('input[name="export"]').click(function(){ - windowName = 'formTarget' + (new Date().getTime()); - newWindow = open("",windowName,"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=0,directories=1,width=900"); - document.dataInput.target = windowName; - document.dataInput.submitID.value = "exportData"; - - primaryData = getTraitData()[0]; - otherData = getTraitData()[1]; - - document.dataInput.strainNames.value = primaryData[0].toString(); - document.dataInput.strainVals.value = primaryData[1].toString(); - document.dataInput.strainVars.value = primaryData[2].toString(); - - document.dataInput.otherStrainNames.value = otherData[0].toString(); - document.dataInput.otherStrainVals.value = otherData[1].toString(); - document.dataInput.otherStrainVars.value = otherData[2].toString(); - - attribute_names = new Array(); - $('#primary,#other').find('th.attribute_name').each(function(){ - attribute_names.push($(this).val().toString()); - }); - - primary_attribute_values = ""; //This string will be structured as a dictionary with a set of values for each attribute; it will be parsed in the ExportPage class - other_attribute_values = ""; - - attr_counter = 1; // Counter for each different attribute - row_counter = 1; // Counter for each value for each attribute - while (attr_counter <= attribute_names.length){ - attribute_name = $('#primary,#other').find('th.attribute_name:eq('+ (attr_counter-1).toString() + ')').text(); - primary_row_count = $('#primary').find('tr').length - 1; - other_row_count = $('#other').find('tr').length - 1; - - primary_attribute_values += attribute_name + " : "; - other_attribute_values += attribute_name + " : "; - - primary_value_string = ""; //This string of values (in the format 'a,b,c', etc) will be appended to the primary_attribute_values string - for (row_counter = 1;row_counter <= numPrimaryRows; row_counter++){ - value = $('#primary_attribute'+attr_counter.toString()+'_sample'+row_counter.toString()).text(); - if (row_counter == primary_row_count) { - primary_value_string += (value + " / "); - } - else{ - primary_value_string += (value + ","); - } - } - - primary_attribute_values += primary_value_string; - - other_value_string = ""; //This string of values (in the format 'a,b,c', etc) will be appended to the other_attribute_values string - for (row_counter = 1;row_counter <= numOtherRows; row_counter++){ - value = $('#other_attribute'+attr_counter.toString()+'_sample'+row_counter.toString()).text(); - if (row_counter == other_row_count) { - other_value_string += (value + " / "); - } - else{ - other_value_string += (value + ","); - } - } - other_attribute_values += other_value_string; - attr_counter += 1 - } - - document.dataInput.extra_attributes.value = primary_attribute_values; - document.dataInput.other_extra_attributes.value = other_attribute_values; - - document.dataInput.submit(); - }); - - var thisTable = $('#sortable1,#sortable2'); //ZS: variable representing each table, because it's used often - - thisTable.find('input[name="selectCheck"]').click(function(){ - if($(this).is(':checked')){ - $(this).parent("").parent("").children("td").css("background-color", "yellow"); - } - else{ - if(!($(this).parent().parent().hasClass('outlier'))){ - $(this).parent().parent().children("td").css("background-color", "white"); - } - } - }); - - $('input[name=resetButton]').click(function(){ - - //ZS: Reset "hide no value" and "hide outliers" - $('#showHideOptions').find('input[name=showHideNoValue]').val(' Hide No Value '); - $('#showHideOptions').find('input[name=showHideOutliers]').val(' Hide Outliers '); - noValShown = 1; - outliersShown = 1; - - for (i=1;i<=numPrimaryRows-1;i++){ - var thisRow = $('#Primary_'+i); - if (thisRow.is('.invisible')){ - thisRow.removeClass('invisible'); - } - if (thisRow.is('.blocked')){ - thisRow.removeClass('blocked'); - } - if (thisRow.is(':not(.outlier)')){ - thisRow.css("background-color", "white"); - } - - var thisValueField = thisRow.find('.valueField'); - - var originalValue = thisValueField[0].defaultValue; - var thisClassNames = thisRow.find('input:eq(1)').attr('class').split(/\s+/); - var valueClass = thisClassNames[thisClassNames.length-1]; - thisRow.find('input:eq(1)').removeClass(valueClass).addClass(originalValue).val(originalValue); - - if (thisValueField.length > 1){ - var originalValue = thisValueField[1].defaultValue; - var thisClassNames = thisRow.find('input:eq(2)').attr('class').split(/\s+/); - var valueClass = thisClassNames[thisClassNames.length-1]; - thisRow.find('input:eq(2)').removeClass(valueClass).addClass(originalValue).val(originalValue); - } - } - for (i=1;i<=numOtherRows-1;i++){ - var thisRow = $('#Other_'+i); - if (thisRow.is('.invisible')){ - thisRow.removeClass('invisible') - } - if (thisRow.is('.blocked')){ - thisRow.removeClass('blocked'); - } - if (thisRow.is(':not(.outlier)')){ - thisRow.css("background-color", "white"); - } - - var thisValueField = thisRow.find('.valueField'); - - var originalValue = thisValueField[0].defaultValue; - var thisClassNames = thisRow.find('input:eq(1)').attr('class').split(/\s+/); - var valueClass = thisClassNames[thisClassNames.length-1]; - thisRow.find('input:eq(1)').removeClass(valueClass).addClass(originalValue).val(originalValue); - - if (thisValueField.length > 1){ - var originalValue = thisValueField[1].defaultValue; - var thisClassNames = thisRow.find('input:eq(2)').attr('class').split(/\s+/); - var valueClass = thisClassNames[thisClassNames.length-1]; - thisRow.find('input:eq(2)').removeClass(valueClass).addClass(originalValue).val(originalValue); - } - } - }); - - var tiptext2 = "e.g., 4, 6-30, 43"; - var blockField = $('#showHideOptions').find('input[name=removeField]'); //ZS: Field where user inputs the index of the samples he/she wants to block; created variable because it's used often - - if(blockField.val() == '' || blockField.val() == tiptext2) { - blockField.addClass('searchtip'); - blockField.val(tiptext2); - } - - blockField.focus(function(e) { - if(blockField.val() == tiptext2) { - blockField.val(''); - } - blockField.removeClass('searchtip'); - }); - - blockField.blur(function(e) { - if(blockField.val() == '') { - blockField.addClass('searchtip'); - blockField.val(tiptext2); - } else if(blockField.val() == tiptext2) { - blockField.addClass('searchtip'); - } else { - blockField.removeClass('searchtip'); - } - }); - - var noValShown = new Boolean(1); - var outliersShown = new Boolean(1); - - $('#showHideOptions').bind('click', function(e){ - var target = e.target; - $target = $(target); - - if (target.name === 'blockSamples'){ - if (blockField.val() == tiptext2){ - blockField.val('') - } - blockedText = blockField.val(); - blockedTextSplit = new Array(); - blockedItems = new Array(); - - blockedTextSplit = blockedText.split(/\,/); - - for (i=0;i<=blockedTextSplit.length-1;i++) { - var item = blockedTextSplit[i]; - if(item.indexOf('-') != -1){ - subArray = new Array(); - subArray = item.split('-'); - num1 = parseInt(subArray[0]); - num2 = parseInt(subArray[1]); - for (j=num1;j<=num2;j=j+1){ - blockedItems.push(j); - } - } - else if(!(isNaN(item))) { - blockedItems.push(item); - } - } - - for (i=0;i<=blockedItems.length-1;i++) { - item = blockedItems[i]; - if ($('select[name=block_method]').val() == '0') { - var thisRow = $('#Other_'+item); - } - else { - var thisRow = $('#Primary_'+item); - } - - if (thisRow.is('.novalue')) { - continue; - } - else { - thisRow.addClass('blocked').find('input.valueField').val('x'); - } - - //First look at value cell - var thisCell = thisRow.find('input:eq(1)'); - var thisClassNames = thisCell.attr('class').split(/\s+/); - var valueClass = thisClassNames[thisClassNames.length-1]; - var header = thisRow.parents('table.tablesorter').find('th.header:contains("Value"):eq(0)'); - if (header.hasClass('headerSortUp')){ - thisCell.removeClass(valueClass).addClass('-9999'); - } else if (header.hasClass('headerSortDown')){ - thisCell.removeClass(valueClass).addClass('9999'); - } else { - thisCell.removeClass(valueClass).addClass('-9999'); - } - - //Check if there is an SE column - if (thisRow.find('input.valueField').length > 1) { - var thisCell = thisRow.find('input:eq(2)'); - var thisClassNames = thisCell.attr('class').split(/\s+/); - var valueClass = thisClassNames[thisClassNames.length-1]; - var header = thisRow.parents('table.tablesorter').find('th.header:contains("SE"):eq(0)'); - if (header.hasClass('headerSortUp')){ - thisCell.removeClass(valueClass).addClass('-9999'); - } else if (header.hasClass('headerSortDown')){ - thisCell.removeClass(valueClass).addClass('9999'); - } else { - thisCell.removeClass(valueClass).addClass('-9999'); - } - } - } - } - - else if (target.name === 'showHideNoValue'){ - if (noValShown) { - $('#showHideOptions').find('input[name=showHideNoValue]').val(' Show No Value '); - for (i=1;i<=Math.max(numPrimaryRows,numOtherRows)-1;i++) { - if (i<=numPrimaryRows-1) { - var thisRow = $('#Primary_'+i); - if (thisRow.is('.novalue:visible') || thisRow.is('.blocked:visible')){ - jQuery(thisRow).addClass('invisible'); - } - } - if (i<=numOtherRows-1){ - var thisOtherRow = $('#Other_'+i); - if (thisOtherRow.is('.novalue:visible') || thisOtherRow.is('.blocked:visible')){ - if (thisOtherRow.is(':visible')){ - jQuery(thisOtherRow).addClass('invisible'); - } - } - } - } - noValShown = 0; - } - else { - $('#showHideOptions').find('input[name=showHideNoValue]').val(' Hide No Value '); - for (i=1;i<=Math.max(numPrimaryRows,numOtherRows)-1;i++) { - if (i<=numPrimaryRows-1) { - var thisRow = $('#Primary_'+i); - if (thisRow.is('.novalue') || thisRow.is('.blocked')){ - jQuery(thisRow).removeClass('invisible'); - if (!(outliersShown)) { - if (thisRow.is('.outlier:visible')){ - jQuery(thisRow).addClass('invisible'); - } - } - } - } - if (i<=numOtherRows-1){ - var thisOtherRow = $('#Other_'+i); - if (thisOtherRow.is('.novalue') || thisOtherRow.is('.blocked')){ - jQuery(thisOtherRow).removeClass('invisible'); - if (!(outliersShown)) { - if (thisOtherRow.is('.outlier:visible')){ - jQuery(thisOtherRow).addClass('invisible'); - } - } - } - } - } - noValShown = 1; - } - } - - else if (target.name === 'showHideOutliers'){ - if (outliersShown){ - $('#showHideOptions').find('input[name=showHideOutliers]').val(' Show Outliers '); - for (i=1;i<=Math.max(numPrimaryRows,numOtherRows)-1;i++) { - if (i<=numPrimaryRows-1) { - thisRow = $('#Primary_'+i); - if (thisRow.is('.outlier:visible') && (!(thisRow.is('.invisible')))) { - thisRow.addClass('invisible') - } - } - if (i<=numOtherRows-1) { - thisOtherRow = $('#Other_'+i); - if (thisOtherRow.is('.outlier:visible') && (!(thisOtherRow.is('.invisible')))) { - thisOtherRow.addClass('invisible') - } - } - } - outliersShown = 0; - } - else { - $('#showHideOptions').find('input[name=showHideOutliers]').val(' Hide Outliers '); - for (i=1;i<=Math.max(numPrimaryRows,numOtherRows)-1;i++) { - if (i<=numPrimaryRows-1) { - thisRow = $('#Primary_'+i); - if (thisRow.is('.outlier') && (!(thisRow.is(':visible')))) { - if (!(noValShown)) { - if (thisRow.is('.blocked')){ - continue; - } - } - jQuery(thisRow).removeClass('invisible') - } - } - if (i<=numOtherRows-1) { - thisOtherRow = $('#Other_'+i); - if (thisOtherRow.is('.outlier') && (!(thisOtherRow.is(':visible')))) { - if (!(noValShown)) { - if (thisOtherRow.is('.blocked')){ - continue; - } - } - jQuery(thisOtherRow).removeClass('invisible') - } - } - } - outliersShown = 1; - } - } - return false; - }); -}); - -function getTraitData(){ - primary_row_count = $('#sortable1').find('tr').length - 1; - other_row_count = $('#sortable2').find('tr').length - 1; - - primaryStrainNames = new Array(); - primaryVals = new Array(); - primaryVars = new Array(); - - allStrainNames = new Array(); - allVals = new Array(); - allVars = new Array(); - - for (i = 1;i <= primary_row_count; i++){ - thisRow = $('#Primary_'+i); - strainName = thisRow.find('span:first').text(); - primaryStrainNames.push(strainName); - allStrainNames.push(strainName); - strainVal = thisRow.find('input:eq(1)').val(); - primaryVals.push(strainVal); - allVals.push(strainVal); - strainVar = ''; // Just to initialize it in case there is no var - strainVar = thisRow.find('input:eq(2)').val(); - primaryVars.push(strainVar); - allVars.push(strainVar); - } - - otherStrainNames = new Array(); - otherVals = new Array(); - otherVars = new Array(); - - for (j = 1;j <= other_row_count; j++){ - thisRow = $('#Other_'+j) - strainName = thisRow.find('span:first').text(); - otherStrainNames.push(strainName); - strainVal = thisRow.find('input:eq(1)').val(); - otherVals.push(strainVal); - strainVar = ''; // Just to initialize it in case there is no var - strainVar = thisRow.find('input:eq(2)').val(); - otherVars.push(strainVar); - - if (jQuery.inArray(strainName, allStrainNames) == -1) { - allStrainNames.push(strainName); - allVals.push(strainVal); - allVars.push(strainVar); - } - } - - primaryData = [primaryStrainNames, primaryVals, primaryVars]; - otherData = [otherStrainNames, otherVals, otherVars]; - allData = [allStrainNames, allVals, allVars]; - - return [primaryData, otherData, allData]; -} + var thisTable = $('#sortable1,#sortable2'); + thisTable.bind("update propertychange keyup input paste", function (e) { -/* -used by networkGraphPageBody.py -*/ + var target = e.target; + $target = $(target); -//Default to plain text + symbol for the "Export Graph File" button -$('input[name=exportGraphFile]').live('click', function() { window.open($('input[name=exportFilename]').val() + "_plain_symbol.txt") }); + if (target.nodeName.toLowerCase() == 'input') { + thisClassNames = $target.attr('class').split(/\s+/); + valueClass = thisClassNames[thisClassNames.length - 1]; + newValue = $target.val(); + thisParent = $target.parent('td'); + thisParentId = thisParent.attr('id'); + + $target.removeClass(valueClass); + + if (newValue == 'x') { + thisParent.parent('tr').addClass('blocked'); + } else { + $('#' + thisParentId).children('input.valueField:eq(0)').addClass(newValue); + } + } + }); + + //////////////////////////////////// + // Initially close tabs + //////////////////////////////////// + thisForm = $('form[name="dataInput"]'); + + $('#sectionbody2').hide(); + $('#sectionbody3').hide(); + $('#sectionbody4').hide(); + + $('#title1').click(function () { + $('#sectionbody1').toggle(); + return false; + }); + $('#title2').click(function () { + $('#sectionbody2').toggle(); + return false; + }); + $('#title3').click(function () { + $('#sectionbody3').toggle(); + return false; + }); + $('#title4').click(function () { + $('#sectionbody4').toggle(); + return false; + }); + $('#title5').click(function () { + $('#sectionbody5').toggle(); + return false; + }); -function changeFormat(graphName){ - var graphFormat = $('#exportFormat').val(); - var traitType = $('#traitType').val(); - $('input[name=exportGraphFile]').die('click'); - if (graphFormat=="xgmml"){ - if (traitType=="symbol"){ - var graphFile = graphName+ "_xgmml_symbol.txt"; - $('input[name=exportGraphFile]').live('click', function() { window.open(graphFile) }); + ////////////////////////////////////////////////////////////// + // Switch out + and - icon when you click each section header + ////////////////////////////////////////////////////////////// + var expand_html = "<span class=\"expand_container\"> <IMG src=\"/images/Expand.gif\" alt=\"Expand\"></span>"; + var contract_html = "<span class=\"contract_container\"> <IMG src=\"/images/Contract.gif\" alt=\"Contract\"></span>"; + + $('#title2, #title3, #title4').prepend(expand_html).addClass('1'); + + $('#title1, #title5').prepend(contract_html).addClass('0'); + + for (i = 1; i <= 5; i++) { + $('#title' + i).click(function () { + if ($(this).hasClass('0')) { + $(this).find('span').replaceWith(expand_html); + $(this).removeClass('0'); + $(this).addClass('1'); + } else { + $(this).find('span').replaceWith(contract_html); + $(this).removeClass('1'); + $(this).addClass('0'); + } + }); + } + + // Exclude cases by attributes + $('div.attribute_values:first').css('display', 'inline'); //Display the dropdown menu with the first attribute's distinct values + $('select[name=exclude_menu]').change(function () { + $('div.attribute_values').css('display', 'none'); //clear all other menus when a new attribute is selected + attribute = $(this).val(); + //attribute = $('select[name=exclude_menu]').val(); + menu = $('div.attribute_values').find('[name=\'' + attribute + '\']'); + menu.parent().css('display', 'inline'); + }); + + primary_row_count = $('#primary').find('tr').length - 1; + other_row_count = $('#other').find('tr').length - 1; + + if (primary_row_count >= other_row_count) { + row_count = primary_row_count; + } else { + row_count = other_row_count; + } + + $('div.attribute_values').children('select').change(function () { + exclude_value = $(this).val(); + }); +}); + +$(window).load(function () { + + //ZS: These are needed in a few places; looping through rows by index is faster than doing a "find" search + numPrimaryRows = $('#sortable1').find('tr').length; + numOtherRows = $('#sortable2').find('tr').length; + + + /////////////////////////////// + //Basic Statistics + /////////////////////////////// + ///////////////////////////////////////////////////////////////// + // Hide unselected Basic Statistics tabs (when just BXD strains + // are selected, hide the results for all strains/non-BXD) + ///////////////////////////////////////////////////////////////// + $('#stats_tabs1').hide(); + $('#stats_tabs2').hide(); + + $('#sectionbody2').find('select[name=stats_mdp]').change(function () { + selected = $('#sectionbody2').find('select[name=stats_mdp] option:selected').val(); + for (i = 0; i <= 2; i++) { + $('#stats_tabs' + i).hide(); + } + $('#stats_tabs' + selected).show(); + }); + + //////////////////////////////////////////////////////////////////////// + // Select the same tab across each sample group (when a Box Plot is + // selected for BXD, switching to Non-BXD will also display a Box Plot) + ////////////./////////////////////////////////////////////////////////// + var $tabs1 = $('#stats_tabs0').tabs(); + var $tabs2 = $('#stats_tabs1').tabs(); + var $tabs3 = $('#stats_tabs2').tabs(); + + $tabs1.tabs({ + show: function (event, ui) { + var selected = $tabs1.tabs('option', 'selected'); + $tabs2.tabs('select', selected); + $tabs3.tabs('select', selected); + } + }); + $tabs2.tabs({ + show: function (event, ui) { + var selected = $tabs2.tabs('option', 'selected'); + $tabs1.tabs('select', selected); + $tabs3.tabs('select', selected); + } + }); + $tabs3.tabs({ + show: function (event, ui) { + var selected = $tabs3.tabs('option', 'selected'); + $tabs1.tabs('select', selected); + $tabs2.tabs('select', selected); + } + }); + + + /////////////////////////////// + //Calculate Correlations + /////////////////////////////// + $('#sectionbody3').find('input[name="sample_corr"]').click(function () { + dbValue = $('select[name=database1] option:selected').val(); + $('input[name=database]').val(dbValue); + criteriaValue = $('select[name=criteria1] option:selected').val(); + $('input[name=criteria]').val(criteriaValue); + MDPValue = $('select[name=MDPChoice1] option:selected').val(); + $('input[name=MDPChoice]').val(MDPValue); + + methodValue = $('input[name=sample_method]:checked').val(); + + //This simple method can be used now that 'method' is defaulted to None instead of '' + if (methodValue == "1") { + $('input[name=method]').val('1'); + } else { + $('input[name=method]').val('2'); + } + + dataEditingFunc(this.form, 'correlation'); + }); + + $('#sectionbody3').find('input[name="lit_corr"]').click(function () { + dbValue = $('select[name=database2] option:selected').val(); + $('input[name=database]').val(dbValue); + criteriaValue = $('select[name=criteria2] option:selected').val(); + $('input[name=criteria]').val(criteriaValue); + MDPValue = $('select[name=MDPChoice2] option:selected').val(); + $('input[name=MDPChoice]').val(MDPValue); + + $('input[name=method]').val('3'); + + dataEditingFunc(this.form, 'correlation'); + }); + + $('#sectionbody3').find('input[name="tiss_corr"]').click(function () { + dbValue = $('select[name=database3] option:selected').val(); + $('input[name=database]').val(dbValue); + criteriaValue = $('select[name=criteria3] option:selected').val(); + $('input[name=criteria]').val(criteriaValue); + MDPValue = $('select[name=MDPChoice3] option:selected').val(); + $('input[name=MDPChoice]').val(MDPValue); + + methodValue = $('input[name=tissue_method]:checked').val(); + + if (methodValue == "4") { + $('input[name=method]').val('4'); + } else { + $('input[name=method]').val('5'); + } + dataEditingFunc(this.form, 'correlation'); + }); + + /////////////////////////////// + //Mapping Tools + /////////////////////////////// + $('#sectionbody4').find('input[name=interval]').click(function () { + chrValue = $('select[name=chromosomes1] option:selected').val(); + $('input[name=chromosomes]').val(chrValue); + scaleValue = $('select[name=scale1] option:selected').val(); + $('input[name=scale]').val(scaleValue); + $('input[name=controlLocus]').val(''); + + //Changed the way permValue, bootValue, and parentsValue are acquired; before it was $(____).is(':checked'); + permValue = $('input[name=permCheck1]:checked').val(); + $('input[name=permCheck]').val(permValue); + + bootValue = $('input[name=bootCheck1]:checked').val(); + $('input[name=bootCheck]').val(bootValue); + + if ($('input[name=parentsf14regression1]:checked').length > 0) { + $('input[name=parentsf14regression]').val('on'); + } else { + $('input[name=parentsf14regression]').val('off'); + } + + varValue = $('input[name=applyVarianceSE1]:checked').val(); + $('input[name=applyVarianceSE]').val(varValue); + + dataEditingFunc(this.form, 'intervalMap'); + }); + + var tiptext = "e.g., rs12345"; + controlLocus = $('#sectionbody4').find('input[name=controlLocus]'); + + if (controlLocus.val() == '' || controlLocus == tiptext) { + controlLocus.addClass('searchtip').val(tiptext); + } + + controlLocus.focus(function (e) { + if (controlLocus.val() == tiptext) { + controlLocus.val(''); + } + controlLocus.removeClass('searchtip'); + }); + + controlLocus.blur(function (e) { + if (controlLocus.val() == '') { + controlLocus.addClass('searchtip').val(tiptext); + } else if (controlLocus.val() == tiptext) { + controlLocus.addClass('searchtip'); + } else { + controlLocus.removeClass('searchtip'); + } + }); + + $('#sectionbody4').find('input[name=composite]').click(function () { + chrValue = $('select[name=chromosomes2] option:selected').val(); + $('input[name=chromosomes]').val(chrValue); + scaleValue = $('select[name=scale2] option:selected').val(); + $('input[name=scale]').val(scaleValue); + controlValue = controlLocus.val(); + if (controlValue != tiptext) { + controlLocus.val(controlValue); + } else { + controlLocus.val(''); + } + + //Changed the way permValue, bootValue, and parentsValue are acquired; before it was $(____).is(':checked'); + permValue = $('input[name=permCheck2]:checked').val(); + $('input[name=permCheck]').val(permValue); + + bootValue = $('input[name=bootCheck2]:checked').val(); + $('input[name=bootCheck]').val(bootValue); + + if ($('input[name=parentsf14regression3]:checked').length > 0) { + $('input[name=parentsf14regression]').val('on'); + } else { + $('input[name=parentsf14regression]').val('off'); + } + + dataEditingFunc(this.form, 'intervalMap'); + + }); + + $('#sectionbody4').find('input[name=marker]').click(function () { + //Changed the way parentsValue is acquired; before it was $(____).is(':checked'); + if ($('input[name=parentsf14regression2]:checked').length > 0) { + $('input[name=parentsf14regression]').val('on'); + } else { + $('input[name=parentsf14regression]').val('off'); + } + + varValue = $('input[name=applyVarianceSE2]:checked').val(); + $('input[name=applyVarianceSE]').val(varValue); + + dataEditingFunc(this.form, 'markerRegression'); + }); + + /////////////////////////////// + //Review and Edit Data + /////////////////////////////// + $('input[name=excludeGroup]').click(function () { + for (i = 1; i <= Math.max(primary_row_count, other_row_count) - 1; i++) { + valueExists = 0; + $('#Primary_' + i + ',#Other_' + i).children().each(function () { + if ($(this).text() == exclude_value) { + $('#Primary_' + i + ',#Other_' + i).addClass('blocked').find('input[type=text]').val('x'); + valueExists = 1; + return false; } - else if (traitType=="name"){ - var graphFile = graphName+ "_xgmml_name.txt"; - $('input[name=exportGraphFile]').live('click', function() { window.open(graphFile) }); + }); + } + }); + + $('.update').click(function () { + windowName = 'formTarget' + (new Date().getTime()); + var windowHeight; // windowHeight and windowWidth are used to place the window in the center of the screen + var windowWidth; + windowHeight = (window.screen.height/2) - (350 + 10) + windowWidth = (window.screen.width/2) - (450 + 50) + newWindow = open("",windowName,"menubar=1,toolbar=1,resizable=1,left=" + windowWidth + ",top=" + windowHeight + ",screenX=" + windowWidth + ",screenY=" + windowHeight + ",status=1,scrollbars=0,directories=1"); + + document.dataInput.target = windowName; + document.dataInput.submitID.value = "basicStatistics"; + + primaryData = getTraitData()[0]; + otherData = getTraitData()[1]; + allData = getTraitData()[2]; + + if (otherData[0].length > 0) { + if ($('select[name="stats_mdp"] option:selected').val() == 0) { + document.dataInput.strainNames.value = allData[0].toString(); + document.dataInput.strainVals.value = allData[1].toString(); + document.dataInput.strainVars.value = allData[2].toString(); + } else if ($('select[name="stats_mdp"] option:selected').val() == 1) { + document.dataInput.strainNames.value = primaryData[0].toString(); + document.dataInput.strainVals.value = primaryData[1].toString(); + document.dataInput.strainVars.value = primaryData[2].toString(); + } else { + document.dataInput.strainNames.value = otherData[0].toString(); + document.dataInput.strainVals.value = otherData[1].toString(); + document.dataInput.strainVars.value = otherData[2].toString(); + } + } else { + document.dataInput.strainNames.value = allData[0].toString(); + document.dataInput.strainVals.value = allData[1].toString(); + document.dataInput.strainVars.value = allData[2].toString(); + } + + document.dataInput.submit(); + }); + + $('input[name="export"]').click(function () { + windowName = 'formTarget' + (new Date().getTime()); + newWindow = open("", windowName, "menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=0,directories=1,width=900"); + document.dataInput.target = windowName; + document.dataInput.submitID.value = "exportData"; + + primaryData = getTraitData()[0]; + otherData = getTraitData()[1]; + + document.dataInput.strainNames.value = primaryData[0].toString(); + document.dataInput.strainVals.value = primaryData[1].toString(); + document.dataInput.strainVars.value = primaryData[2].toString(); + + document.dataInput.otherStrainNames.value = otherData[0].toString(); + document.dataInput.otherStrainVals.value = otherData[1].toString(); + document.dataInput.otherStrainVars.value = otherData[2].toString(); + + attribute_names = new Array(); + $('#primary,#other').find('th.attribute_name').each(function () { + attribute_names.push($(this).val().toString()); + }); + + primary_attribute_values = ""; //This string will be structured as a dictionary with a set of values for each attribute; it will be parsed in the ExportPage class + other_attribute_values = ""; + + attr_counter = 1; // Counter for each different attribute + row_counter = 1; // Counter for each value for each attribute + while (attr_counter <= attribute_names.length) { + attribute_name = $('#primary,#other').find('th.attribute_name:eq(' + (attr_counter - 1).toString() + ')').text(); + primary_row_count = $('#primary').find('tr').length - 1; + other_row_count = $('#other').find('tr').length - 1; + + primary_attribute_values += attribute_name + " : "; + other_attribute_values += attribute_name + " : "; + + primary_value_string = ""; //This string of values (in the format 'a,b,c', etc) will be appended to the primary_attribute_values string + for (row_counter = 1; row_counter <= numPrimaryRows; row_counter++) { + value = $('#primary_attribute' + attr_counter.toString() + '_sample' + row_counter.toString()).text(); + if (row_counter == primary_row_count) { + primary_value_string += (value + " / "); + } else { + primary_value_string += (value + ","); } + } + + primary_attribute_values += primary_value_string; + + other_value_string = ""; //This string of values (in the format 'a,b,c', etc) will be appended to the other_attribute_values string + for (row_counter = 1; row_counter <= numOtherRows; row_counter++) { + value = $('#other_attribute' + attr_counter.toString() + '_sample' + row_counter.toString()).text(); + if (row_counter == other_row_count) { + other_value_string += (value + " / "); + } else { + other_value_string += (value + ","); + } + } + other_attribute_values += other_value_string; + attr_counter += 1 + } + + document.dataInput.extra_attributes.value = primary_attribute_values; + document.dataInput.other_extra_attributes.value = other_attribute_values; + + document.dataInput.submit(); + }); + + var thisTable = $('#sortable1,#sortable2'); //ZS: variable representing each table, because it's used often + thisTable.find('input[name="selectCheck"]').click(function () { + if ($(this).is(':checked')) { + $(this).parent("").parent("").children("td").css("background-color", "yellow"); + } else { + if (!($(this).parent().parent().hasClass('outlier'))) { + $(this).parent().parent().children("td").css("background-color", "white"); + } } + }); - else if (graphFormat=="plain"){ - if (traitType=="symbol"){ - var graphFile = graphName+ "_plain_symbol.txt"; - $('input[name=exportGraphFile]').live('click', function() { window.open(graphFile) }); + $('input[name=resetButton]').click(function () { + + //ZS: Reset "hide no value" and "hide outliers" + $('#showHideOptions').find('input[name=showHideNoValue]').val(' Hide No Value '); + $('#showHideOptions').find('input[name=showHideOutliers]').val(' Hide Outliers '); + noValShown = 1; + outliersShown = 1; + + for (i = 1; i <= numPrimaryRows - 1; i++) { + var thisRow = $('#Primary_' + i); + if (thisRow.is('.invisible')) { + thisRow.removeClass('invisible'); + } + if (thisRow.is('.blocked')) { + thisRow.removeClass('blocked'); + } + if (thisRow.is(':not(.outlier)')) { + thisRow.css("background-color", "white"); + } + + var thisValueField = thisRow.find('.valueField'); + + var originalValue = thisValueField[0].defaultValue; + var thisClassNames = thisRow.find('input:eq(1)').attr('class').split(/\s+/); + var valueClass = thisClassNames[thisClassNames.length - 1]; + thisRow.find('input:eq(1)').removeClass(valueClass).addClass(originalValue).val(originalValue); + + if (thisValueField.length > 1) { + var originalValue = thisValueField[1].defaultValue; + var thisClassNames = thisRow.find('input:eq(2)').attr('class').split(/\s+/); + var valueClass = thisClassNames[thisClassNames.length - 1]; + thisRow.find('input:eq(2)').removeClass(valueClass).addClass(originalValue).val(originalValue); + } + } + for (i = 1; i <= numOtherRows - 1; i++) { + var thisRow = $('#Other_' + i); + if (thisRow.is('.invisible')) { + thisRow.removeClass('invisible') + } + if (thisRow.is('.blocked')) { + thisRow.removeClass('blocked'); + } + if (thisRow.is(':not(.outlier)')) { + thisRow.css("background-color", "white"); + } + + var thisValueField = thisRow.find('.valueField'); + + var originalValue = thisValueField[0].defaultValue; + var thisClassNames = thisRow.find('input:eq(1)').attr('class').split(/\s+/); + var valueClass = thisClassNames[thisClassNames.length - 1]; + thisRow.find('input:eq(1)').removeClass(valueClass).addClass(originalValue).val(originalValue); + + if (thisValueField.length > 1) { + var originalValue = thisValueField[1].defaultValue; + var thisClassNames = thisRow.find('input:eq(2)').attr('class').split(/\s+/); + var valueClass = thisClassNames[thisClassNames.length - 1]; + thisRow.find('input:eq(2)').removeClass(valueClass).addClass(originalValue).val(originalValue); + } + } + }); + + var tiptext2 = "e.g., 4, 6-30, 43"; + var blockField = $('#showHideOptions').find('input[name=removeField]'); //ZS: Field where user inputs the index of the samples he/she wants to block; created variable because it's used often + if (blockField.val() == '' || blockField.val() == tiptext2) { + blockField.addClass('searchtip'); + blockField.val(tiptext2); + } + + blockField.focus(function (e) { + if (blockField.val() == tiptext2) { + blockField.val(''); + } + blockField.removeClass('searchtip'); + }); + + blockField.blur(function (e) { + if (blockField.val() == '') { + blockField.addClass('searchtip'); + blockField.val(tiptext2); + } else if (blockField.val() == tiptext2) { + blockField.addClass('searchtip'); + } else { + blockField.removeClass('searchtip'); + } + }); + + var noValShown = new Boolean(1); + var outliersShown = new Boolean(1); + + $('#showHideOptions').bind('click', function (e) { + var target = e.target; + $target = $(target); + + if (target.name === 'blockSamples') { + if (blockField.val() == tiptext2) { + blockField.val('') + } + blockedText = blockField.val(); + blockedTextSplit = new Array(); + blockedItems = new Array(); + + blockedTextSplit = blockedText.split(/\,/); + + for (i = 0; i <= blockedTextSplit.length - 1; i++) { + var item = blockedTextSplit[i]; + if (item.indexOf('-') != -1) { + subArray = new Array(); + subArray = item.split('-'); + num1 = parseInt(subArray[0]); + num2 = parseInt(subArray[1]); + for (j = num1; j <= num2; j = j + 1) { + blockedItems.push(j); + } + } else if (!(isNaN(item))) { + blockedItems.push(item); + } + } + + for (i = 0; i <= blockedItems.length - 1; i++) { + item = blockedItems[i]; + if ($('select[name=block_method]').val() == '0') { + var thisRow = $('#Other_' + item); + } else { + var thisRow = $('#Primary_' + item); + } + + if (thisRow.is('.novalue')) { + continue; + } else { + thisRow.addClass('blocked').find('input.valueField').val('x'); + } + + //First look at value cell + var thisCell = thisRow.find('input:eq(1)'); + var thisClassNames = thisCell.attr('class').split(/\s+/); + var valueClass = thisClassNames[thisClassNames.length - 1]; + var header = thisRow.parents('table.tablesorter').find('th.header:contains("Value"):eq(0)'); + if (header.hasClass('headerSortUp')) { + thisCell.removeClass(valueClass).addClass('-9999'); + } else if (header.hasClass('headerSortDown')) { + thisCell.removeClass(valueClass).addClass('9999'); + } else { + thisCell.removeClass(valueClass).addClass('-9999'); + } + + //Check if there is an SE column + if (thisRow.find('input.valueField').length > 1) { + var thisCell = thisRow.find('input:eq(2)'); + var thisClassNames = thisCell.attr('class').split(/\s+/); + var valueClass = thisClassNames[thisClassNames.length - 1]; + var header = thisRow.parents('table.tablesorter').find('th.header:contains("SE"):eq(0)'); + if (header.hasClass('headerSortUp')) { + thisCell.removeClass(valueClass).addClass('-9999'); + } else if (header.hasClass('headerSortDown')) { + thisCell.removeClass(valueClass).addClass('9999'); + } else { + thisCell.removeClass(valueClass).addClass('-9999'); + } + } + } + } else if (target.name === 'showHideNoValue') { + if (noValShown) { + $('#showHideOptions').find('input[name=showHideNoValue]').val(' Show No Value '); + for (i = 1; i <= Math.max(numPrimaryRows, numOtherRows) - 1; i++) { + if (i <= numPrimaryRows - 1) { + var thisRow = $('#Primary_' + i); + if (thisRow.is('.novalue:visible') || thisRow.is('.blocked:visible')) { + jQuery(thisRow).addClass('invisible'); + } + } + if (i <= numOtherRows - 1) { + var thisOtherRow = $('#Other_' + i); + if (thisOtherRow.is('.novalue:visible') || thisOtherRow.is('.blocked:visible')) { + if (thisOtherRow.is(':visible')) { + jQuery(thisOtherRow).addClass('invisible'); + } + } + } + } + noValShown = 0; + } else { + $('#showHideOptions').find('input[name=showHideNoValue]').val(' Hide No Value '); + for (i = 1; i <= Math.max(numPrimaryRows, numOtherRows) - 1; i++) { + if (i <= numPrimaryRows - 1) { + var thisRow = $('#Primary_' + i); + if (thisRow.is('.novalue') || thisRow.is('.blocked')) { + jQuery(thisRow).removeClass('invisible'); + if (!(outliersShown)) { + if (thisRow.is('.outlier:visible')) { + jQuery(thisRow).addClass('invisible'); + } + } + } + } + if (i <= numOtherRows - 1) { + var thisOtherRow = $('#Other_' + i); + if (thisOtherRow.is('.novalue') || thisOtherRow.is('.blocked')) { + jQuery(thisOtherRow).removeClass('invisible'); + if (!(outliersShown)) { + if (thisOtherRow.is('.outlier:visible')) { + jQuery(thisOtherRow).addClass('invisible'); + } + } + } + } } - else if (traitType=="name"){ - var graphFile = graphName+ "_plain_name.txt"; - $('input[name=exportGraphFile]').live('click', function() { window.open(graphFile) }); + noValShown = 1; + } + } else if (target.name === 'showHideOutliers') { + if (outliersShown) { + $('#showHideOptions').find('input[name=showHideOutliers]').val(' Show Outliers '); + for (i = 1; i <= Math.max(numPrimaryRows, numOtherRows) - 1; i++) { + if (i <= numPrimaryRows - 1) { + thisRow = $('#Primary_' + i); + if (thisRow.is('.outlier:visible') && (!(thisRow.is('.invisible')))) { + thisRow.addClass('invisible') + } + } + if (i <= numOtherRows - 1) { + thisOtherRow = $('#Other_' + i); + if (thisOtherRow.is('.outlier:visible') && (!(thisOtherRow.is('.invisible')))) { + thisOtherRow.addClass('invisible') + } + } + } + outliersShown = 0; + } else { + $('#showHideOptions').find('input[name=showHideOutliers]').val(' Hide Outliers '); + for (i = 1; i <= Math.max(numPrimaryRows, numOtherRows) - 1; i++) { + if (i <= numPrimaryRows - 1) { + thisRow = $('#Primary_' + i); + if (thisRow.is('.outlier') && (!(thisRow.is(':visible')))) { + if (!(noValShown)) { + if (thisRow.is('.blocked')) { + continue; + } + } + jQuery(thisRow).removeClass('invisible') + } + } + if (i <= numOtherRows - 1) { + thisOtherRow = $('#Other_' + i); + if (thisOtherRow.is('.outlier') && (!(thisOtherRow.is(':visible')))) { + if (!(noValShown)) { + if (thisOtherRow.is('.blocked')) { + continue; + } + } + jQuery(thisOtherRow).removeClass('invisible') + } + } } + outliersShown = 1; + } + } + return false; + }); +}); + +function getTraitData() { + primary_row_count = $('#sortable1').find('tr').length - 1; + other_row_count = $('#sortable2').find('tr').length - 1; + + primaryStrainNames = new Array(); + primaryVals = new Array(); + primaryVars = new Array(); + + allStrainNames = new Array(); + allVals = new Array(); + allVars = new Array(); + + for (i = 1; i <= primary_row_count; i++) { + thisRow = $('#Primary_' + i); + strainName = thisRow.find('span:first').text(); + primaryStrainNames.push(strainName); + allStrainNames.push(strainName); + strainVal = thisRow.find('input:eq(1)').val(); + primaryVals.push(strainVal); + allVals.push(strainVal); + strainVar = ''; // Just to initialize it in case there is no var + strainVar = thisRow.find('input:eq(2)').val(); + primaryVars.push(strainVar); + allVars.push(strainVar); + } + + otherStrainNames = new Array(); + otherVals = new Array(); + otherVars = new Array(); + + for (j = 1; j <= other_row_count; j++) { + thisRow = $('#Other_' + j) + strainName = thisRow.find('span:first').text(); + otherStrainNames.push(strainName); + strainVal = thisRow.find('input:eq(1)').val(); + otherVals.push(strainVal); + strainVar = ''; // Just to initialize it in case there is no var + strainVar = thisRow.find('input:eq(2)').val(); + otherVars.push(strainVar); + + if (jQuery.inArray(strainName, allStrainNames) == -1) { + allStrainNames.push(strainName); + allVals.push(strainVal); + allVars.push(strainVar); } + } + + primaryData = [primaryStrainNames, primaryVals, primaryVars]; + otherData = [otherStrainNames, otherVals, otherVars]; + allData = [allStrainNames, allVals, allVars]; + + return [primaryData, otherData, allData]; } +/* +used by networkGraphPageBody.py +*/ + +//Default to plain text + symbol for the "Export Graph File" button +$('input[name=exportGraphFile]').live('click', function () { + window.open($('input[name=exportFilename]').val() + "_plain_symbol.txt") +}); + +function changeFormat(graphName) { + var graphFormat = $('#exportFormat').val(); + var traitType = $('#traitType').val(); + + $('input[name=exportGraphFile]').die('click'); + + if (graphFormat == "xgmml") { + if (traitType == "symbol") { + var graphFile = graphName + "_xgmml_symbol.txt"; + $('input[name=exportGraphFile]').live('click', function () { + window.open(graphFile) + }); + } else if (traitType == "name") { + var graphFile = graphName + "_xgmml_name.txt"; + $('input[name=exportGraphFile]').live('click', function () { + window.open(graphFile) + }); + } + } else if (graphFormat == "plain") { + if (traitType == "symbol") { + var graphFile = graphName + "_plain_symbol.txt"; + $('input[name=exportGraphFile]').live('click', function () { + window.open(graphFile) + }); + } else if (traitType == "name") { + var graphFile = graphName + "_plain_name.txt"; + $('input[name=exportGraphFile]').live('click', function () { + window.open(graphFile) + }); + } + } +} \ No newline at end of file diff --git a/web/javascript/selectDatasetMenu.js b/web/javascript/selectDatasetMenu.js index bb910a5b..bb910a5b 100755..100644 --- a/web/javascript/selectDatasetMenu.js +++ b/web/javascript/selectDatasetMenu.js diff --git a/web/javascript/webqtl.js b/web/javascript/webqtl.js index 19ecf3b7..536e7d26 100755 --- a/web/javascript/webqtl.js +++ b/web/javascript/webqtl.js @@ -38,16 +38,16 @@ function makeTree(thisForm, nnn){ j += 1; } } - + var windowName = 'formTarget' + (new Date().getTime()); var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); var html = ""; if (j > 0) - { + { var waithtml1 ="<Blockquote class='title' id='red'>Your list of "+j+" transcripts is being exported to the Gene Ontology Tree Machine for analysis. This window will soon be replaced with the main GOTM results.</Blockquote>"; } else - { + { var waithtml1 ="<Blockquote class='title' id='red'>Your should select at least one transcript to export to the Gene Ontology Tree Machine for analysis.</Blockquote>"; } html += waithtml1; @@ -152,7 +152,11 @@ function showDatabase3(formName, Database,ProbeSetID,CellID){ document[formName].database.value = Database; document[formName].ProbeSetID.value = ProbeSetID; document[formName].CellID.value = CellID; - document[formName].submit(); + console.log("formName:", formName) + console.log("document[formName]:", document[formName]) + console.log("submit turned off for debugging") + console.log("showDatabase3 is deprecated for the flask version of this site") + //document[formName].submit(); } @@ -188,10 +192,10 @@ function showTrait(fmName){ var thisForm = getForm(fmName); if (thisForm == null || showTrait.arguments.length < 2) return; - + windowName = genNewWin(); thisForm.target = windowName; - + thisForm.FormID.value = "showDatabase"; thisForm.ProbeSetID.value = showTrait.arguments[1]; if (showTrait.arguments.length > 2) @@ -205,10 +209,10 @@ function showCateGraph(fmName){ var thisForm = getForm(fmName); if (thisForm == null || showCateGraph.arguments.length < 2) return; - + windowName = genNewWin(); thisForm.target = windowName; - + thisForm.FormID.value = "showCategoryGraph"; thisForm.interval1.value = showCateGraph.arguments[1]; thisForm.interval2.value = showCateGraph.arguments[2]; @@ -219,22 +223,22 @@ function showCorrPlot(fmName){ var thisForm = getForm(fmName); if (thisForm == null || showCorrPlot.arguments.length < 2) return; - + windowName = genNewWin(); thisForm.target = windowName; - + thisForm.FormID.value = "showCorrelationPlot"; thisForm.ProbeSetID.value = showCorrPlot.arguments[1]; if (showCorrPlot.arguments.length > 2) thisForm.CellID.value = showCorrPlot.arguments[2]; else thisForm.CellID.value = ""; - + thisForm.X_geneSymbol.value = null; thisForm.Y_geneSymbol.value = null; thisForm.submit(); - + } @@ -242,12 +246,12 @@ function showCorrPlotThird(fmName){ var thisForm = getForm(fmName); if (thisForm == null || showCorrPlotThird.arguments.length < 3) return; - + windowName = genNewWin(); thisForm.target = windowName; - + var olddb = thisForm.database.value; - + thisForm.FormID.value = "showCorrelationPlot"; thisForm.database.value = showCorrPlotThird.arguments[1]; thisForm.ProbeSetID.value = showCorrPlotThird.arguments[2]; @@ -284,15 +288,15 @@ function ODE(thisForm, script){ var windowName = 'formTarget' + (new Date().getTime()); var newWindow = open("", windowName, "width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); var html = ""; - if (j == 0){ + if (j == 0){ j = length; trait_list2 = trait_list_all; correlation2 = correlation_all; llid_list2 = llid_list_all; } - + var waithtml1 ="<Blockquote class='title' id='red'>Your list of "+j+" transcripts is being exported to the ODE for analysis. This window will soon be replaced with the results.</Blockquote>"; - + html += waithtml1; newWindow.document.write(html); newWindow.document.close(); @@ -302,14 +306,14 @@ function ODE(thisForm, script){ thisForm.correlation.value = correlation2.join(','); thisForm.id_value.value = thisForm.correlation.value; thisForm.llid_list.value = llid_list2.join(','); - + // ODE - + thisForm.idtype.value = thisForm.id_type.value; thisForm.species.value = thisForm.org.value; thisForm.list.value = thisForm.id_list.value; thisForm.client.value = "genenetwork"; - + thisForm.target = windowName; var oldaction = thisForm.action; thisForm.action = script; @@ -318,13 +322,13 @@ function ODE(thisForm, script){ } } */ -// 02/12/2009 +// 02/12/2009 // Lei Yan /*scripts in the Dataediting form*/ function dataEditingFunc(thisForm,submitIdValue){ - + windowName = 'formTarget' + (new Date().getTime()); if (thisForm.FormID.value!='secondRegression'){ @@ -336,7 +340,7 @@ function dataEditingFunc(thisForm,submitIdValue){ } else if (submitIdValue == "addRecord"){ - windowName = thisForm.RISet.value; + windowName = thisForm.RISet.value; var name = thisForm.identification.value; if (name != ""){ } @@ -352,7 +356,7 @@ function dataEditingFunc(thisForm,submitIdValue){ newWindow = open("",windowName,"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900"); thisForm.target = windowName; - newWindow.focus(); + newWindow.focus(); thisForm.submitID.value = submitIdValue; thisForm.submit(); } @@ -394,7 +398,7 @@ function addRmvSelection(windowName, thisForm, addORrmv){ thisForm.target = windowName; thisForm.FormID.value = addORrmv; thisForm.submit(); - newWindow.focus(); + newWindow.focus(); } function batchSelection(thisForm){ @@ -424,7 +428,7 @@ function showTop10(formName, submitIdValue){ if ((submitIdValue == "markerRegression")||(submitIdValue == "compositeRegression")){ thisForm.topten.value = "topten"; } - + thisForm.submitID.value = submitIdValue; thisForm.submit(); } @@ -441,12 +445,12 @@ function showIndividualChromosome(formName, submitIdValue, ii){ } if (match == 0) return; - + windowName = 'formTarget' + (new Date().getTime()); newWindow = open("",windowName,"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900"); newWindow.focus(); thisForm.target = windowName; - + if (submitIdValue == "showIntMap"){ thisForm.chromosomes.value = ii; } @@ -529,10 +533,10 @@ function dataWindow(form){ } -function xchange() { +function xchange() { var select = document.crossChoice.RISet; var value = select.options[select.selectedIndex].value; - + if (value !="BDAI") return; document.crossChoice.variance.checked = false; } @@ -580,97 +584,97 @@ function crossinfo2(){ function checkWidth(){ var width = document.getElementsByName('plotSize')[0].value - + if (width < 600) { alert("Plot size is too small - setting size to 600") document.getElementsByName('plotSize')[0].value = 600 - } + } } function changeLineColor(){ var lineColor = document.getElementsByName('lineColorSel')[0].value - + document.getElementsByName('lineColor')[0].value = lineColor } function changeLineSize(){ var lineSize = document.getElementsByName('lineSizeSel')[0].value - + document.getElementsByName('lineSize')[0].value = lineSize } function changeIdColor(){ var idColor = document.getElementsByName('idColorSel')[0].value - + document.getElementsByName('idColor')[0].value = idColor } function changeIdFont(){ var idFont = document.getElementsByName('idFontSel')[0].value - + document.getElementsByName('idFont')[0].value = idFont } function changeIdSize(){ var idSize = document.getElementsByName('idSizeSel')[0].value - + document.getElementsByName('idSize')[0].value = idSize } function changeSymbolColor(){ var symbolColor = document.getElementsByName('colorSel')[0].value - + document.getElementsByName('symbolColor')[0].value = symbolColor } function changeSymbol(){ var symbol = document.getElementsByName('symbolSel')[0].value - + document.getElementsByName('symbol')[0].value = symbol } function changeFilled(){ var filled = document.getElementsByName('fillSel')[0].value - + document.getElementsByName('filled')[0].value = filled } function changeSize(){ var symbolSize = document.getElementsByName('sizeSel')[0].value - + document.getElementsByName('symbolSize')[0].value = symbolSize } -function checkAll(thisForm){ +function checkAll(thisForm){ var length = thisForm.searchResult.length; for(var i = 0; i < length; i++) { thisForm.searchResult[i].checked = true; highlight(thisForm.searchResult[i]); } -} +} -function checkNone(thisForm){ +function checkNone(thisForm){ var length = thisForm.searchResult.length; for(var i = 0; i < length; i++) { thisForm.searchResult[i].checked = false; highlight(thisForm.searchResult[i]); } -} +} -function checkInvert(thisForm){ +function checkInvert(thisForm){ var length = thisForm.searchResult.length; for(var i = 0; i < length; i++) { thisForm.searchResult[i].checked = !(thisForm.searchResult[i].checked); highlight(thisForm.searchResult[i]); } -} +} /*Not used anymore*/ -function checkTraits2(thisForm){ +function checkTraits2(thisForm){ var length = thisForm.searchResult.length; var category = thisForm.selectmenu.value; for(var i = 0; i < length; i++) @@ -720,18 +724,18 @@ function checkTraits2(thisForm){ else {} } -} +} function checkNumeric(field,limit,resetvalue,compares,fdname) { - pattern = /^-?[0-9]*\.?[0-9]*$/; + pattern = /^-?[0-9]*\.?[0-9]*$/; if(pattern.test(field.value)==false) { alert("Not numeric in " + fdname); field.value = resetvalue; } - else + else { if (compares == 'gthan') { if(field.value > limit) @@ -748,7 +752,7 @@ function checkNumeric(field,limit,resetvalue,compares,fdname) } } -function checkTraits(thisForm){ +function checkTraits(thisForm){ var length = thisForm.searchResult.length; var andor = thisForm.selectandor.value; var gthan = parseFloat(thisForm.selectgt.value); @@ -780,7 +784,7 @@ function checkTraits(thisForm){ } -function checkPM(thisForm){ +function checkPM(thisForm){ var length = thisForm.searchResult.length; for(var i = 0; i < length; i++) { @@ -792,8 +796,8 @@ function checkPM(thisForm){ {thisForm.searchResult[i].checked = false;} highlight(thisForm.searchResult[i]); } -} -function checkMM(thisForm){ +} +function checkMM(thisForm){ var length = thisForm.searchResult.length; for(var i = 0; i < length; i++) { @@ -804,14 +808,14 @@ function checkMM(thisForm){ {thisForm.searchResult[i].checked = false;} highlight(thisForm.searchResult[i]); } -} +} -function directPermuAlert(thisForm){ - if (thisForm.directPermuCheckbox.checked){ - alert("Interaction permutation will take long time to compute.\n Check this box only when necessary."); +function directPermuAlert(thisForm){ + if (thisForm.directPermuCheckbox.checked){ + alert("Interaction permutation will take long time to compute.\n Check this box only when necessary."); } -} +} function cliqueDatabase(pid){ var windowName = 'clique'; @@ -869,7 +873,7 @@ function snpbrowser_function_refresh() { for (var i=1; i<document.newSNPPadding.exonfunction.length; i++) { document.newSNPPadding.exonfunction.options[i].selected=false; } - } + } } function snpbrowser_domain_refresh() { @@ -889,7 +893,7 @@ function showHideOptions() { var options = document.getElementById("options"); var showOptions = document.getElementsByName("showOptions")[0]; var optionsButton = document.getElementsByName("optionsButton")[0]; - + if (showOptions.value == '0') { showOptions.value = '1'; optionsButton.value = "Hide Options"; @@ -898,22 +902,22 @@ function showHideOptions() { showOptions.value = '0'; optionsButton.value = "Show Options"; } - - options.style.display = (options.style.display != 'none' ? 'none' : '' ); + + options.style.display = (options.style.display != 'none' ? 'none' : '' ); } function editPCAName(thisForm) { var pcaTraits = document.getElementsByName("searchResult"); - + var nameArray = new Array(); - + for (j=1; j<=pcaTraits.length; j++){ var traitName = "pcaTrait" + String(j); var pcaTrait = document.getElementById(traitName).childNodes[0].innerHTML; var editID = "editName" + String(j); var editName = document.getElementsByName(editID)[0].value; var originalName = pcaTrait.split(":")[3]; - + if (editName.length < 1) { nameArray.push(originalName); } @@ -921,13 +925,13 @@ function editPCAName(thisForm) { nameArray.push(editName); } } - + var newNames = nameArray.join(","); - + thisForm.newNames.value = newNames; thisForm.searchResult = thisForm.oldSearchResult; thisForm.FormID.value = "corMatrix"; - + thisForm.submit(); } @@ -950,7 +954,7 @@ function unknownChipError(chipName){ } /* -Used by PartialCorrInputPage.py, +Used by PartialCorrInputPage.py, */ function validateTrait(thisForm, inputRadioNames, type, method) { @@ -1029,7 +1033,7 @@ function validateTrait(thisForm, inputRadioNames, type, method) } } - + } /* @@ -1044,7 +1048,7 @@ function changeView(i, Chr_Mb_list){ newWindow = open('',windowName,'menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900'); document.changeViewForm.target = windowName; document.changeViewForm.chromosomes.selectedIndex = i+1; - document.changeViewForm.startMb.value = '0.000000'; + document.changeViewForm.startMb.value = '0.000000'; document.changeViewForm.endMb.value = Chr_Mb_list[i]; document.changeViewForm.graphWidth.value = 1280; document.changeViewForm.submit(); @@ -1076,7 +1080,7 @@ used by networkGraphPageBody.py function changeFormat(graphName){ var graphFormat = document.getElementById('exportFormat').value; var traitType = document.getElementById('traitType').value; - + if (graphFormat=="xgmml"){ if (traitType=="symbol"){ var graphname = graphName+ "_xgmml_symbol.txt"; @@ -1087,7 +1091,7 @@ function changeFormat(graphName){ document.getElementById('exportGraphFile').onclick = function() { window.open(graphname) }; } } - + else if (graphFormat=="plain") { if (traitType=="symbol") @@ -1102,7 +1106,7 @@ function changeFormat(graphName){ } } -} +} /* @@ -1126,13 +1130,13 @@ function set_customStrains_cookie() { } /* -* moved from beta2.js -*/ +* moved from beta2.js +*/ function centerIntervalMapOnRange2(chr, start, stop, form) { var oldindex = form.chromosomes.selectedIndex; var oldstart = form.startMb.value; var oldend = form.endMb.value; - + for (var i = 1; i < form.chromosomes.length; i++){ if(form.chromosomes.options[i].text == chr){ form.chromosomes.selectedIndex = i; @@ -1145,12 +1149,12 @@ function centerIntervalMapOnRange2(chr, start, stop, form) { form.chromosomes.selectedIndex = oldindex; form.startMb.value = oldstart; form.endMb.value = oldend; - + } /* -* moved from index3.html -*/ +* moved from index3.html +*/ String.prototype.trim = function(){ return this.replace(/(^\s*)|(\s*$)/g, ""); @@ -1282,13 +1286,13 @@ function showTissueCorrPlot(fmName,geneSymbol1, geneSymbol2,rank){ var thisForm = getForm(fmName); if (thisForm == null || showTissueCorrPlot.arguments.length < 3) return; - + if (rank){ thisForm.rankOrder.value = rank; }else{ thisForm.rankOrder.value = 0; } - + windowName = genNewWin(); thisForm.target = windowName; @@ -1302,7 +1306,7 @@ function showTissueCorrPlot(fmName,geneSymbol1, geneSymbol2,rank){ if(typeof(thisForm.ProbeSetID2) !== 'undefined'){ thisForm.ProbeSetID2.value = 'none'; } - thisForm.submit(); + thisForm.submit(); } /* Used by MarkerRegressionPage.py */ @@ -1317,7 +1321,7 @@ function validatePvalue(thisForm){ { alert("Please enter numeric value."); thisForm.pValue.focus(); - } + } else if (pValue <0){ alert("Please enter the valid P-Value."); thisForm.pValue.focus(); @@ -1327,7 +1331,7 @@ function validatePvalue(thisForm){ } - + } @@ -1338,9 +1342,9 @@ function showTissueAbbr(fmName,shortname, fullname){ thisForm.FormID.value = 'tissueAbbreviation'; thisForm.shortTissueName.value=shortname; thisForm.fullTissueName.value=fullname; - + thisForm.submit(); thisForm.FormID.value = 'showCorrelationPlot'; thisForm.target ='' - + } |