diff options
Diffstat (limited to 'web/javascript/correlationMatrix.js')
| -rwxr-xr-x | web/javascript/correlationMatrix.js | 453 |
1 files changed, 453 insertions, 0 deletions
diff --git a/web/javascript/correlationMatrix.js b/web/javascript/correlationMatrix.js new file mode 100755 index 00000000..d3ca195e --- /dev/null +++ b/web/javascript/correlationMatrix.js @@ -0,0 +1,453 @@ + +/*For Tissue Correlation Page; Default Export Tissue Text*/ +function exportTissueText(items){ + var windowName = 'ExportTissueText'; + var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); + var html = '<PRE>'; + + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(0,items[i][j].indexOf('/'));} + else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ + html += items[i][j].slice(0, items[i][j].indexOf('/')); + } + + else { + html += "Correlation";} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + html += '<BR><BR>'; + + html += '<PRE>'; + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} + else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ + html += items[i][j].slice(0, items[i][j].indexOf('/'));} + else { + html += 'P Value';} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + newWindow.document.write(html); + newWindow.document.close(); + newWindow.focus();/**/ +} + +/*Export Tissue Text for long label*/ +function exportTissueVerboseText(items){ + var windowName = 'ExportVerboseText'; + var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); + var html = '<PRE>'; + + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(0,items[i][j].indexOf('/'));} + else if ((i>0) && (j == 0)){ + position1 = items[i][j].indexOf('/') + 1; + position2 = items[i][j].indexOf('/', position1); + html += items[i][j].slice(position2 + 1, items[i][j].length);} + else if ((i == 0) && (j>0)){ + html += items[i][j].slice(0, items[i][j].indexOf('/')) ;} + else { + html += "Correlation";} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + html += '<BR><BR>'; + + html += '<PRE>'; + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} + else if ((i>0) && (j == 0)){ + position1 = items[i][j].indexOf('/') + 1; + position2 = items[i][j].indexOf('/', position1) + 1; + html += items[i][j].slice(position2, items[i][j].length);} + else if ((i == 0) && (j>0)){ + html += items[i][j].slice(0, items[i][j].indexOf('/'));} + else { + html += 'P Value';} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + newWindow.document.write(html); + newWindow.document.close(); + newWindow.focus();/**/ +} + +/*For Tissue Correlation Page; Default Save function for results of symbol count =1*/ +function exportAllTissueText(items){ + var windowName = 'ExportTissueText'; + var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); + var html = '<PRE>'; + + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(0,items[i][j].indexOf('/'));} + else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ + html += items[i][j].slice(0, items[i][j].indexOf('/')); + } + + else { + html += "Correlation";} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + newWindow.document.write(html); + newWindow.document.close(); + newWindow.focus();/**/ +} + +/* Display Short Label for Tissue */ +function displayTissueShortName(){ + var geneSymbols = document.getElementsByName("Symbol"); + + var exportButton = document.getElementsByName("export")[0]; + var shortNameCheck = document.getElementById("shortName_1"); // to check if currently short + + if (shortNameCheck.style.display == 'none'){ + exportButton.value="Export"; + exportButton.onclick = function(){exportTissueText(allCorrelations);}; + } + else { + exportButton.value="Export"; + exportButton.onclick = function(){exportTissueText(allCorrelations);}; + } + + for (i=0; i < geneSymbols.length; i++){ + var shortName = document.getElementById("shortName_" + String(i)); + var verboseName = document.getElementById("verboseName_" + String(i)); + var verboseName2 = document.getElementById("verboseName2_" + String(i)); + var verboseName3 = document.getElementById("verboseName3_" + String(i)); + + + if (shortName.style.display == 'block') { + shortName.style.display = 'none'; + } + + else if (shortName.style.display == 'none') { + if (verboseName.style.display == 'block'){ + verboseName.style.display = 'none'; + verboseName2.style.display = 'none'; + verboseName3.style.display = 'none'; + } + shortName.style.display = 'block'; + } + } +} + +/* Display Long Label for Tissue */ +function displayTissueVerboseName(){ + var geneSymbols = document.getElementsByName("Symbol"); + + var exportButton = document.getElementsByName("export")[0]; + var verboseNameCheck = document.getElementById("verboseName_0"); // to check if currently verbose + + if (verboseNameCheck.style.display == 'none'){ + exportButton.value="Export"; + exportButton.onclick = function(){exportTissueVerboseText(allCorrelations);}; + } + else { + exportButton.value="Export"; + exportButton.onclick = function(){exportTissueText(allCorrelations);}; + } + + for (i=0; i < geneSymbols.length; i++){ + var verboseName = document.getElementById("verboseName_" + String(i)); + var verboseName2 = document.getElementById("verboseName2_" + String(i)); + var verboseName3 = document.getElementById("verboseName3_" + String(i)); + var shortName = document.getElementById("shortName_" + String(i)); + + + if (verboseName.style.display == 'block') { + verboseName.style.display = 'none'; + verboseName2.style.display = 'none'; + verboseName3.style.display = 'none'; + } + + else if (verboseName.style.display == 'none'){ + if (shortName.style.display == 'block'){ + shortName.style.display = 'none'; + } + verboseName.style.display = 'block'; + verboseName2.style.display = 'block'; + verboseName3.style.display = 'block'; + } + } + +} + +/* Info page for dataset of tissue correlation */ +function tissueDatasetInfo(thisForm,dataSetNames){ + var windowName = 'dataset_info'; + var Index = thisForm.selectedIndex; + var datasetName =dataSetNames[Index] + var page = '/dbdoc/' + datasetName + '.html'; + newWindow = open(page,windowName,"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900"); + newWindow.focus() +} + + +/*for correlation matrix page*/ +/* Display Short Label in Correlation Matrix */ +function displayShortName(){ + var traitList = document.getElementsByName("traitList")[0].value.split("\t"); + var exportButton = document.getElementsByName("export")[0]; + var shortNameCheck = document.getElementById("shortName_1"); // to check if currently short + + if (shortNameCheck.style.display == 'none'){ + exportButton.value="Export"; + exportButton.onclick = function(){exportAbbreviationText(allCorrelations);}; + } + else { + exportButton.value="Export"; + exportButton.onclick = function(){exportText(allCorrelations);}; + } + + for (i=0; i < traitList.length; i++){ + var shortName = document.getElementById("shortName_" + String(i)); + var verboseName = document.getElementById("verboseName_" + String(i)); + var verboseName2 = document.getElementById("verboseName2_" + String(i)); + var verboseName3 = document.getElementById("verboseName3_" + String(i)); + + + if (shortName.style.display == 'block') { + shortName.style.display = 'none'; + } + + else if (shortName.style.display == 'none') { + if (verboseName.style.display == 'block'){ + verboseName.style.display = 'none'; + verboseName2.style.display = 'none'; + verboseName3.style.display = 'none'; + } + shortName.style.display = 'block'; + } + } +} + +/* Display Long Label in Correlation Matrix*/ +function displayVerboseName(){ + var traitList = document.getElementsByName("traitList")[0].value.split("\t"); + var exportButton = document.getElementsByName("export")[0]; + var verboseNameCheck = document.getElementById("verboseName_0"); // to check if currently verbose + + if (verboseNameCheck.style.display == 'none'){ + exportButton.value="Export"; + exportButton.onclick = function(){exportVerboseText(allCorrelations);}; + } + else { + exportButton.value="Export"; + exportButton.onclick = function(){exportText(allCorrelations);}; + } + + for (i=0; i < traitList.length; i++){ + var verboseName = document.getElementById("verboseName_" + String(i)); + var verboseName2 = document.getElementById("verboseName2_" + String(i)); + var verboseName3 = document.getElementById("verboseName3_" + String(i)); + var shortName = document.getElementById("shortName_" + String(i)); + + if (verboseName.style.display == 'block') { + verboseName.style.display = 'none'; + verboseName2.style.display = 'none'; + verboseName3.style.display = 'none'; + } + + else if (verboseName.style.display == 'none'){ + if (shortName.style.display == 'block'){ + shortName.style.display = 'none'; + } + verboseName.style.display = 'block'; + verboseName2.style.display = 'block'; + verboseName3.style.display = 'block'; + } + } + +} + +/*Export for long label in Correlation Matrix*/ +function exportVerboseText(items){ + var windowName = 'ExportVerboseText'; + var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); + var html = '<PRE>'; + + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(0,items[i][j].indexOf('/'));} + else if ((i>0) && (j == 0)){ + position1 = items[i][j].indexOf('/') + 1; + position2 = items[i][j].indexOf('/', position1); + html += "Trait " + String(i) + ": " + items[i][j].slice(position2 + 1, items[i][j].length);} + else if ((i == 0) && (j>0)){ + html += items[i][j];} + else { + html += "Correlation";} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + html += '<BR><BR>'; + + html += '<PRE>'; + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} + else if ((i>0) && (j == 0)){ + position1 = items[i][j].indexOf('/') + 1; + position2 = items[i][j].indexOf('/', position1) + 1; + html += "Trait " + String(i) + ": " + items[i][j].slice(position2, items[i][j].length);} + else if ((i == 0) && (j>0)){ + html += items[i][j];} + else { + html += 'N';} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + newWindow.document.write(html); + newWindow.document.close(); + newWindow.focus();/**/ +} + +/*Default Export for labels in Correlation Matrix*/ +function exportText(items){ + var windowName = 'ExportText'; + var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); + var html = '<PRE>'; + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + //alert(" i="+i+"---j="+j+"----item[i][j]=="+items[i][j]); + if ((i>0) && (j>0)){ + html += items[i][j].slice(0,items[i][j].indexOf('/'));} + else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ + html += items[i][j].slice(0, items[i][j].indexOf('/'));} + else { + html += "Correlation";} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + html += '<BR><BR>'; + + html += '<PRE>'; + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} + else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ + html += items[i][j].slice(0, items[i][j].indexOf('/'));} + else { + html += 'N';} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + newWindow.document.write(html); + newWindow.document.close(); + newWindow.focus();/**/ +} + +/*Export for short label in Correlation Matrix*/ +function exportAbbreviationText(items){ + var windowName = 'ExportAbbreviationText'; + var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); + var html = '<PRE>'; + + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(0,items[i][j].indexOf('/'));} + else if ((i>0) && (j == 0)){ + position1 = items[i][j].indexOf('/') + 1; + position2 = items[i][j].indexOf('/', position1); + html += "Trait " + String(i) + ": " + items[i][j].slice(position1, position2);} + else if ((i == 0) && (j>0)){ + html += items[i][j];} + else { + html += "Correlation";} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + html += '<BR><BR>'; + + html += '<PRE>'; + for (i=0;i<items.length;i++){ + for (j=0;j<items[i].length;j++){ + if ((i>0) && (j>0)){ + html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} + else if ((i>0) && (j == 0)){ + position1 = items[i][j].indexOf('/') + 1; + position2 = items[i][j].indexOf('/', position1); + html += "Trait " + String(i) + ": " + items[i][j].slice(position1, position2);} + else if ((i == 0) && (j>0)){ + html += items[i][j];} + else { + html += 'N';} + html += '\t';} + html += '\n';} + html += '</PRE>'; + + newWindow.document.write(html); + newWindow.document.close(); + newWindow.focus();/**/ +} + +/*dynamic change formID for process bar display issue. Only Single symbol result page needs process bar*/ +function selectFormIdForTissueCorr(fmName){ + + var thisForm = getForm(fmName); + var geneSymbolStr =thisForm.geneSymbols.value; + var geneSymbolStrSplit =geneSymbolStr.split(/\n/);//delimiter is very important here + + len=geneSymbolStrSplit.length; + if (len==1){ + thisForm.FormID.value="dispTissueCorrelationResult"; + } + else{ + thisForm.FormID.value="dispMultiSymbolsResult"; + } + thisForm.submit() +} + +/*make default for dropdown menu in tissue correlation page*/ +function makeTissueCorrDefault(thisform){ + setCookie('cookieTest', 'cookieTest', 1); + var cookieTest = getCookie('cookieTest'); + delCookie('cookieTest'); + if (cookieTest){ + var defaultTissueDataset = thisform.tissueProbeSetFeezeId.value; + setCookie('defaultTissueDataset', defaultTissueDataset, 10); + alert("The current dataset is set to default."); + } + else{ + alert("You need to enable Cookies in your browser."); + } + +} + +/*set default selected value for tissue correlation dataset Id*/ +function getTissueCorrDefault(fmName){ + var thisForm = getForm(fmName); + if (getCookie('defaultTissueDataset')){ + thisForm.tissueProbeSetFeezeId.selectedIndex =(getCookie('defaultTissueDataset'))-1; + } + else{ + thisForm.tissueProbeSetFeezeId.selectedIndex =0; + } + +} |