diff options
Diffstat (limited to 'web/javascript/correlationMatrix.js')
| -rwxr-xr-x | web/javascript/correlationMatrix.js | 453 |
1 files changed, 0 insertions, 453 deletions
diff --git a/web/javascript/correlationMatrix.js b/web/javascript/correlationMatrix.js deleted file mode 100755 index d3ca195e..00000000 --- a/web/javascript/correlationMatrix.js +++ /dev/null @@ -1,453 +0,0 @@ - -/*For Tissue Correlation Page; Default Export Tissue Text*/ -function exportTissueText(items){ - var windowName = 'ExportTissueText'; - var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); - var html = '<PRE>'; - - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(0,items[i][j].indexOf('/'));} - else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ - html += items[i][j].slice(0, items[i][j].indexOf('/')); - } - - else { - html += "Correlation";} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - html += '<BR><BR>'; - - html += '<PRE>'; - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} - else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ - html += items[i][j].slice(0, items[i][j].indexOf('/'));} - else { - html += 'P Value';} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - newWindow.document.write(html); - newWindow.document.close(); - newWindow.focus();/**/ -} - -/*Export Tissue Text for long label*/ -function exportTissueVerboseText(items){ - var windowName = 'ExportVerboseText'; - var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); - var html = '<PRE>'; - - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(0,items[i][j].indexOf('/'));} - else if ((i>0) && (j == 0)){ - position1 = items[i][j].indexOf('/') + 1; - position2 = items[i][j].indexOf('/', position1); - html += items[i][j].slice(position2 + 1, items[i][j].length);} - else if ((i == 0) && (j>0)){ - html += items[i][j].slice(0, items[i][j].indexOf('/')) ;} - else { - html += "Correlation";} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - html += '<BR><BR>'; - - html += '<PRE>'; - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} - else if ((i>0) && (j == 0)){ - position1 = items[i][j].indexOf('/') + 1; - position2 = items[i][j].indexOf('/', position1) + 1; - html += items[i][j].slice(position2, items[i][j].length);} - else if ((i == 0) && (j>0)){ - html += items[i][j].slice(0, items[i][j].indexOf('/'));} - else { - html += 'P Value';} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - newWindow.document.write(html); - newWindow.document.close(); - newWindow.focus();/**/ -} - -/*For Tissue Correlation Page; Default Save function for results of symbol count =1*/ -function exportAllTissueText(items){ - var windowName = 'ExportTissueText'; - var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); - var html = '<PRE>'; - - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(0,items[i][j].indexOf('/'));} - else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ - html += items[i][j].slice(0, items[i][j].indexOf('/')); - } - - else { - html += "Correlation";} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - newWindow.document.write(html); - newWindow.document.close(); - newWindow.focus();/**/ -} - -/* Display Short Label for Tissue */ -function displayTissueShortName(){ - var geneSymbols = document.getElementsByName("Symbol"); - - var exportButton = document.getElementsByName("export")[0]; - var shortNameCheck = document.getElementById("shortName_1"); // to check if currently short - - if (shortNameCheck.style.display == 'none'){ - exportButton.value="Export"; - exportButton.onclick = function(){exportTissueText(allCorrelations);}; - } - else { - exportButton.value="Export"; - exportButton.onclick = function(){exportTissueText(allCorrelations);}; - } - - for (i=0; i < geneSymbols.length; i++){ - var shortName = document.getElementById("shortName_" + String(i)); - var verboseName = document.getElementById("verboseName_" + String(i)); - var verboseName2 = document.getElementById("verboseName2_" + String(i)); - var verboseName3 = document.getElementById("verboseName3_" + String(i)); - - - if (shortName.style.display == 'block') { - shortName.style.display = 'none'; - } - - else if (shortName.style.display == 'none') { - if (verboseName.style.display == 'block'){ - verboseName.style.display = 'none'; - verboseName2.style.display = 'none'; - verboseName3.style.display = 'none'; - } - shortName.style.display = 'block'; - } - } -} - -/* Display Long Label for Tissue */ -function displayTissueVerboseName(){ - var geneSymbols = document.getElementsByName("Symbol"); - - var exportButton = document.getElementsByName("export")[0]; - var verboseNameCheck = document.getElementById("verboseName_0"); // to check if currently verbose - - if (verboseNameCheck.style.display == 'none'){ - exportButton.value="Export"; - exportButton.onclick = function(){exportTissueVerboseText(allCorrelations);}; - } - else { - exportButton.value="Export"; - exportButton.onclick = function(){exportTissueText(allCorrelations);}; - } - - for (i=0; i < geneSymbols.length; i++){ - var verboseName = document.getElementById("verboseName_" + String(i)); - var verboseName2 = document.getElementById("verboseName2_" + String(i)); - var verboseName3 = document.getElementById("verboseName3_" + String(i)); - var shortName = document.getElementById("shortName_" + String(i)); - - - if (verboseName.style.display == 'block') { - verboseName.style.display = 'none'; - verboseName2.style.display = 'none'; - verboseName3.style.display = 'none'; - } - - else if (verboseName.style.display == 'none'){ - if (shortName.style.display == 'block'){ - shortName.style.display = 'none'; - } - verboseName.style.display = 'block'; - verboseName2.style.display = 'block'; - verboseName3.style.display = 'block'; - } - } - -} - -/* Info page for dataset of tissue correlation */ -function tissueDatasetInfo(thisForm,dataSetNames){ - var windowName = 'dataset_info'; - var Index = thisForm.selectedIndex; - var datasetName =dataSetNames[Index] - var page = '/dbdoc/' + datasetName + '.html'; - newWindow = open(page,windowName,"menubar=1,toolbar=1,location=1,resizable=1,status=1,scrollbars=1,directories=1,width=900"); - newWindow.focus() -} - - -/*for correlation matrix page*/ -/* Display Short Label in Correlation Matrix */ -function displayShortName(){ - var traitList = document.getElementsByName("traitList")[0].value.split("\t"); - var exportButton = document.getElementsByName("export")[0]; - var shortNameCheck = document.getElementById("shortName_1"); // to check if currently short - - if (shortNameCheck.style.display == 'none'){ - exportButton.value="Export"; - exportButton.onclick = function(){exportAbbreviationText(allCorrelations);}; - } - else { - exportButton.value="Export"; - exportButton.onclick = function(){exportText(allCorrelations);}; - } - - for (i=0; i < traitList.length; i++){ - var shortName = document.getElementById("shortName_" + String(i)); - var verboseName = document.getElementById("verboseName_" + String(i)); - var verboseName2 = document.getElementById("verboseName2_" + String(i)); - var verboseName3 = document.getElementById("verboseName3_" + String(i)); - - - if (shortName.style.display == 'block') { - shortName.style.display = 'none'; - } - - else if (shortName.style.display == 'none') { - if (verboseName.style.display == 'block'){ - verboseName.style.display = 'none'; - verboseName2.style.display = 'none'; - verboseName3.style.display = 'none'; - } - shortName.style.display = 'block'; - } - } -} - -/* Display Long Label in Correlation Matrix*/ -function displayVerboseName(){ - var traitList = document.getElementsByName("traitList")[0].value.split("\t"); - var exportButton = document.getElementsByName("export")[0]; - var verboseNameCheck = document.getElementById("verboseName_0"); // to check if currently verbose - - if (verboseNameCheck.style.display == 'none'){ - exportButton.value="Export"; - exportButton.onclick = function(){exportVerboseText(allCorrelations);}; - } - else { - exportButton.value="Export"; - exportButton.onclick = function(){exportText(allCorrelations);}; - } - - for (i=0; i < traitList.length; i++){ - var verboseName = document.getElementById("verboseName_" + String(i)); - var verboseName2 = document.getElementById("verboseName2_" + String(i)); - var verboseName3 = document.getElementById("verboseName3_" + String(i)); - var shortName = document.getElementById("shortName_" + String(i)); - - if (verboseName.style.display == 'block') { - verboseName.style.display = 'none'; - verboseName2.style.display = 'none'; - verboseName3.style.display = 'none'; - } - - else if (verboseName.style.display == 'none'){ - if (shortName.style.display == 'block'){ - shortName.style.display = 'none'; - } - verboseName.style.display = 'block'; - verboseName2.style.display = 'block'; - verboseName3.style.display = 'block'; - } - } - -} - -/*Export for long label in Correlation Matrix*/ -function exportVerboseText(items){ - var windowName = 'ExportVerboseText'; - var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); - var html = '<PRE>'; - - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(0,items[i][j].indexOf('/'));} - else if ((i>0) && (j == 0)){ - position1 = items[i][j].indexOf('/') + 1; - position2 = items[i][j].indexOf('/', position1); - html += "Trait " + String(i) + ": " + items[i][j].slice(position2 + 1, items[i][j].length);} - else if ((i == 0) && (j>0)){ - html += items[i][j];} - else { - html += "Correlation";} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - html += '<BR><BR>'; - - html += '<PRE>'; - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} - else if ((i>0) && (j == 0)){ - position1 = items[i][j].indexOf('/') + 1; - position2 = items[i][j].indexOf('/', position1) + 1; - html += "Trait " + String(i) + ": " + items[i][j].slice(position2, items[i][j].length);} - else if ((i == 0) && (j>0)){ - html += items[i][j];} - else { - html += 'N';} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - newWindow.document.write(html); - newWindow.document.close(); - newWindow.focus();/**/ -} - -/*Default Export for labels in Correlation Matrix*/ -function exportText(items){ - var windowName = 'ExportText'; - var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); - var html = '<PRE>'; - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - //alert(" i="+i+"---j="+j+"----item[i][j]=="+items[i][j]); - if ((i>0) && (j>0)){ - html += items[i][j].slice(0,items[i][j].indexOf('/'));} - else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ - html += items[i][j].slice(0, items[i][j].indexOf('/'));} - else { - html += "Correlation";} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - html += '<BR><BR>'; - - html += '<PRE>'; - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} - else if (((i>0) && (j == 0)) || ((i == 0) && (j > 0))){ - html += items[i][j].slice(0, items[i][j].indexOf('/'));} - else { - html += 'N';} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - newWindow.document.write(html); - newWindow.document.close(); - newWindow.focus();/**/ -} - -/*Export for short label in Correlation Matrix*/ -function exportAbbreviationText(items){ - var windowName = 'ExportAbbreviationText'; - var newWindow = open("", windowName,"width=900,menubar=0,toolbar=1,resizable=1,status=1,scrollbars=1"); - var html = '<PRE>'; - - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(0,items[i][j].indexOf('/'));} - else if ((i>0) && (j == 0)){ - position1 = items[i][j].indexOf('/') + 1; - position2 = items[i][j].indexOf('/', position1); - html += "Trait " + String(i) + ": " + items[i][j].slice(position1, position2);} - else if ((i == 0) && (j>0)){ - html += items[i][j];} - else { - html += "Correlation";} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - html += '<BR><BR>'; - - html += '<PRE>'; - for (i=0;i<items.length;i++){ - for (j=0;j<items[i].length;j++){ - if ((i>0) && (j>0)){ - html += items[i][j].slice(items[i][j].indexOf('/')+1, items[i][j].length);} - else if ((i>0) && (j == 0)){ - position1 = items[i][j].indexOf('/') + 1; - position2 = items[i][j].indexOf('/', position1); - html += "Trait " + String(i) + ": " + items[i][j].slice(position1, position2);} - else if ((i == 0) && (j>0)){ - html += items[i][j];} - else { - html += 'N';} - html += '\t';} - html += '\n';} - html += '</PRE>'; - - newWindow.document.write(html); - newWindow.document.close(); - newWindow.focus();/**/ -} - -/*dynamic change formID for process bar display issue. Only Single symbol result page needs process bar*/ -function selectFormIdForTissueCorr(fmName){ - - var thisForm = getForm(fmName); - var geneSymbolStr =thisForm.geneSymbols.value; - var geneSymbolStrSplit =geneSymbolStr.split(/\n/);//delimiter is very important here - - len=geneSymbolStrSplit.length; - if (len==1){ - thisForm.FormID.value="dispTissueCorrelationResult"; - } - else{ - thisForm.FormID.value="dispMultiSymbolsResult"; - } - thisForm.submit() -} - -/*make default for dropdown menu in tissue correlation page*/ -function makeTissueCorrDefault(thisform){ - setCookie('cookieTest', 'cookieTest', 1); - var cookieTest = getCookie('cookieTest'); - delCookie('cookieTest'); - if (cookieTest){ - var defaultTissueDataset = thisform.tissueProbeSetFeezeId.value; - setCookie('defaultTissueDataset', defaultTissueDataset, 10); - alert("The current dataset is set to default."); - } - else{ - alert("You need to enable Cookies in your browser."); - } - -} - -/*set default selected value for tissue correlation dataset Id*/ -function getTissueCorrDefault(fmName){ - var thisForm = getForm(fmName); - if (getCookie('defaultTissueDataset')){ - thisForm.tissueProbeSetFeezeId.selectedIndex =(getCookie('defaultTissueDataset'))-1; - } - else{ - thisForm.tissueProbeSetFeezeId.selectedIndex =0; - } - -} |