1 files changed, 204 insertions, 0 deletions
diff --git a/web/dbdoc/UCLA_BHHBF2_MUSCLE_FEMALE.html b/web/dbdoc/UCLA_BHHBF2_MUSCLE_FEMALE.html
new file mode 100755
index 00000000..0127007d
--- /dev/null
+++ b/web/dbdoc/UCLA_BHHBF2_MUSCLE_FEMALE.html
@@ -0,0 +1,204 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
+<!--<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">-->
+<HTML><HEAD><TITLE>UCLA BHHBF2 Muscle Female Only **</TITLE>
+<META http-equiv=Content-Type content="text/html; charset=iso-8859-1">
+<LINK REL="stylesheet" TYPE="text/css" HREF='/css/general.css'>
+<LINK REL="stylesheet" TYPE="text/css" HREF='/css/menu.css'>
+<LINK RELl="stylesheet" href="ajax/css/ajax-tooltip.css" media="screen" type="text/css">
+<script type="text/javascript" src="ajax/js/ajax-dynamic-content.js"></script>
+<script type="text/javascript" src="ajax/js/ajax.js"></script>
+<script type="text/javascript" src="ajax/js/ajax-tooltip.js"></script>
+
+</HEAD>
+<BODY  bottommargin="2" leftmargin="2" rightmargin="2" topmargin="2" text=#000000 bgColor=#ffffff>
+<TABLE cellSpacing=5 cellPadding=4 width="100%" border=0>
+<TBODY>
+<TR>
+<script language="JavaScript" src="/javascript/header.js"></script>
+</TR>
+<TR>
+<TD bgColor=#eeeeee class="solidBorder">
+<Table width= "100%" cellSpacing=0 cellPadding=5><TR>
+<!-- Body Start from Here -->
+<TD valign="top" height="200" width="100%" bgcolor="#eeeeee">
+<P class="title">UCLA BHHBF2 Muscle Female Only <A HREF="/webqtl/main.py?FormID=editHtml"><img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A><BR><BR>Accession number: <A HREF="/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=187">GN187</A></P>
+<P>
+
+<B>Data Status</B>: Open data. Please cite: van Nas A, Ingram-Drake L, Sinsheimer JS, Wang SS, Schadt EE, Drake T, Lusis AJ (2010) Expression quantitative trait loci: replication, tissue- and sex-specificity in mice. Genetics 185:1059-1068 (<A HREF="http://www.ncbi.nlm.nih.gov/pubmed/20439777">PMID: 20439777</A>
+
+</P>
+
+<P class="subtitle">Summary:</P>
+
+<Blockquote>
+<P>
+This is a sex-specific subset of data published by van Nas and colleagues. They used an Agilent array to measure expression of most genes (~24,000 60-mer probes). The data are described more fully in the paper and in the GEO GSE data sets: Expression profiling of Muscle tissue from C57BL/6J X C3H/HeJ)F2 and (C3H/HeJ X C57BL/6J)F2</P>
+
+</Blockquote>
+
+
+<P class="subtitle">About the cases used to generate this set of data:</P>
+
+<Blockquote>
+
+<P>This is a sex-specific subset of the original data. Please see Gene Expression Omnibus data set <A HREF="http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12795">GSE12795</A> for details. </P>
+
+
+</Blockquote>
+
+
+<P class="subtitle">About the tissue used to generate this set of data:</P>
+
+<Blockquote>
+<P>Muscle from F2 intercross progeny were generated by intercrossing F1 mice. Mice were fed chow diet containing 4% fat (Ralston-Purina Co., St. Louis, MO) until 8 weeks of age and then were placed on a high-fat "Western" diet containing 42% fat and 0.15% cholesterol (Teklad 88137, Harlan Teklad, Madison WI) for 12 weeks. At 20 weeks mice were sacrificed, after a 12-hour fast. Muscle tissues were dissected and flash frozen in liquid N2 and stored at -80 deg C. </P>
+<P>
+
+<table border="0" cellpadding="0" cellspacing="0" bgcolor="#000000" width="600">
+<tr><td>
+<table width="600" border="0" cellpadding="5" cellspacing="1" align="left">
+<tr bgcolor="royalblue">
+<td><font color=#FFFFFF>Index</font></td><td><font color=#FFFFFF>TubeID</font></td><td><font color=#FFFFFF>Group</font></td><td><font color=#FFFFFF>Strain</font></td><td><font color=#FFFFFF>Age</font></td><td><font color=#FFFFFF>Sex</font></td><td><font color=#FFFFFF>Source</font></td></tr>
+<tr bgcolor="#eeeeee"><td>1</td><td>R2595E.1</td><td>GDP</td><td>129S1/SvImJ</td><td>59</td><td>F</td><td>UTHSC RW</td></tr>
+</table>
+
+</td>
+</tr>
+</table>
+</Blockquote>
+</p>
+
+<P class="subtitle">About downloading this data set:</P>
+<Blockquote>
+<P>Some text here</P>
+</Blockquote>
+
+
+<P class="subtitle">About the array platfrom:</P>
+<Blockquote>
+<P>Some text here</P>
+
+</Blockquote>
+
+
+<P class="subtitle">About data values and data processing:</P>
+
+<Blockquote>
+<P>Some text here</P>
+<P>
+
+<table border="0" cellpadding="0" cellspacing="0" bgcolor="#000000" width="600">
+<tr><td>
+<table width="600" border="0" cellpadding="5" cellspacing="1" align="left">
+<tr bgcolor="royalblue">
+
+<td><font color=#FFFFFF>Index</font></td><td><font color=#FFFFFF>TubeID</font></td><td><font color=#FFFFFF>Strain</font></td><td><font color=#FFFFFF>Original CEL</font></td><td><font color=#FFFFFF>Scale factor</font></td><td><font color=#FFFFFF>Background Average</font></td><td><font color=#FFFFFF>Present</font></td><td><font color=#FFFFFF>Absent</font></td><td><font color=#FFFFFF>Marginal</font></td><td><font color=#FFFFFF>AFFX-b-ActinMur (3'/5')</font></td><td><font color=#FFFFFF>AFFX-GapdhMur (3'/5')</font></td><td><font color=#FFFFFF>Batch Id</font></td><td><font color=#FFFFFF>Used for batch control</font></td></tr>
+<tr bgcolor="#eeeeee"><td>1</td><td>R2595E.1</td><td>129S1/SvImJ</td><td>R2595E.1.CEL</td><td>1.79</td><td>115</td><td>61.00%</td><td>37.50%</td><td>1.50%</td><td>1.46</td><td>0.77</td><td>1</td><td>Y</td></tr>
+</table>
+
+</td>
+</tr>
+</table>
+</Blockquote>
+</p>
+
+
+<P class="subtitle">Data source acknowledgment:</P>
+<Blockquote>
+
+<P>Some text here</P>
+</Blockquote>
+
+
+
+<P class="subtitle">Information about this text file:</P>
+<Blockquote>
+<P>Some text here</P>
+</Blockquote>
+
+<!-- GEO SERIES DATA GOES HERE -->
+<P class="subtitle">GEO Series Data: This section to be used for GEO submission of the whole series of arrays</P>
+<Blockquote>
+<P><B>GSE Series</B>
+<P><B>Status</B>
+<P><B>Title</B>
+<P><B>Organism(s)</B>
+<P><B>Experiment type</B>
+<P><B>Summary</B>
+
+<P><B>Overall design</B>
+<P><B>Contributor(s)</B>
+
+<P><B>Citation(s)</B>
+
+<P>
+<BR><B>Submission date</B>
+<BR><B>Contact name</B>
+<BR><B>E-mails</B>
+<BR><B>Phone</B>
+<BR><B>FAX</B>
+<BR><B>URL</B>
+<BR><B>Organization name</B>
+<BR><B>Department(s)</B>
+<BR><B>Laboratory(s)</B>
+<BR><B>Street address</B>
+<BR><B>City</B>
+<BR><B>State/province</B>
+<BR><B>ZIP/Postal code</B>
+<BR><B>Country</B>
+
+
+<P><B>Platforms</B>
+<P><B>Samples</B>
+<!-- GEO SERIES DATA ENDS HERE -->
+
+</P></Blockquote>
+
+
+
+
+</TR></TABLE>
+</TD>
+</TR>
+<TR>
+<TD align=center bgColor=#ddddff class="solidBorder">
+<!--Start of footer-->
+<TABLE width="90%">
+<script language='JavaScript' src='/javascript/footer.js'></script>
+<TR>
+<TD colspan=3 class="fs12">
+<UL>
+
+</UL>
+</TD>
+</TR>
+</TABLE>
+<!--End of footer-->
+</TD>
+</TR>
+</TABLE>
+<!-- /Footer -->
+<!-- menu script itself. you should not modify this file -->
+<script language="JavaScript" src="/javascript/menu_new.js"></script>
+<!-- items structure. menu hierarchy and links are stored there -->
+<script language="JavaScript" src="/javascript/menu_items.js"></script>
+<!-- files with geometry and styles structures -->
+<script language="JavaScript" src="/javascript/menu_tpl.js"></script>
+<script language="JavaScript">
+<!--//
+// Note where menu initialization block is located in HTML document.
+// Don't try to position menu locating menu initialization block in
+// some table cell or other HTML element. Always put it before </body>
+// each menu gets two parameters (see demo files)
+// 1. items structure
+// 2. geometry structure
+new menu (MENU_ITEMS, MENU_POS);
+// make sure files containing definitions for these variables are linked to the document
+// if you got some javascript error like "MENU_POS is not defined", then you've made syntax
+// error in menu_tpl.js file or that file isn't linked properly.
+
+// also take a look at stylesheets loaded in header in order to set styles
+//-->
+
+</script>
+</BODY>
+</HTML>