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diff --git a/web/dbdoc/SXMGeno.html b/web/dbdoc/SXMGeno.html new file mode 100755 index 00000000..6e9bb35d --- /dev/null +++ b/web/dbdoc/SXMGeno.html @@ -0,0 +1,89 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"> +<HTML><HEAD><TITLE>Barley SXM Genotype Information</TITLE> +<META http-equiv=Content-Type content="text/html; charset=iso-8859-1"> +<LINK REL="stylesheet" TYPE="text/css" HREF='/css/general.css'> +<LINK REL="stylesheet" TYPE="text/css" HREF='/css/menu.css'> +<SCRIPT SRC="/javascript/webqtl.js"></SCRIPT> +</HEAD> +<BODY bottommargin="2" leftmargin="2" rightmargin="2" topmargin="2" text=#000000 bgColor=#ffffff> +<TABLE cellSpacing=5 cellPadding=4 width="100%" border=0> +<TBODY> +<TR> +<script language="JavaScript" src="/javascript/header.js"></script> +</TR> +<TR> +<TD bgColor=#eeeeee class="solidBorder"> +<Table width= "100%" cellSpacing=0 cellPadding=5><TR> +<!-- Body Start from Here --> + +<TD vAlign=top width="100%" height=200 bgColor=#eeeeee> +<P class="title">Barley SXM Genotypes Information <A HREF="/webqtl/main.py?FormID=editHtml"> +<img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A></P> + + +<P>A population of 150 doubled haploid lines was developed from the Steptoe x Morex cross by the <em>Hordeum bulbosum</em> method. The parents were selected for their diversity of agronomic traits, Steptoe is high yielding, broadly adapted six-rowed feed-type barley. Morex is midwestern also six-rowed cultivar that has been for long time considered as the American malting industry standard.</P> +<P>Please cite the following publication when using the Steptoe x Morex (SxM) data sets:<br> +Kleinhofs et al. (1993) A molecular, isozyme and morphological map of the barley (<em>Hordeum vulgare</em>) genome. Theor Appl Genet (1993) 86:705-712</P> +<P>Genotyping by using Illumina GoldenGate BeadArrays and barley pilot OPA1 (1536 SNPs, Rostoks et al 2006) identified 424 good quality SNPs. They were integrated into the RFLP map that contained 632 markers (1202 cM) by using Map Manager QTX (ver 0.27). Final, 1082 cM map, consisting of 505 loci including 227 SNP loci was generated by removing co-segregating markers (leaving a single marker per locus) and correcting the spurious recombinations. </P> + + +<P>The genotype file is available at http://www.genenetwork.org/genotypes/SXM.geno + + +<P>Rostoks et al (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. PNAS, vol. 103 no. 49 18656-18661.</P> +<P class="subtitle"> About this file:</P> +<Blockquote> +<P> The file started, Feb 1, 2007 by AD </P> +<TABLE width="100%"><TR><TD align="left"> </TD> +<TD align="right"> </TD> +</TABLE></Blockquote> + +<P> </P></TD> + +<!-- Body End Here --> +</TR></TABLE> +</TD> +</TR> +<TR> +<TD align=center bgColor=#ddddff class="solidBorder"> + + + + +<!--Start of footer--> +<TABLE width="90%"> +<script language='JavaScript' src='/javascript/footer.js'></script> +</TABLE> +<!--End of footer--> + + + + +</TD> +</TR> +</TABLE> +<!-- /Footer --> +<!-- menu script itself. you should not modify this file --> +<script language="JavaScript" src="/javascript/menu_new.js"></script> +<!-- items structure. menu hierarchy and links are stored there --> +<script language="JavaScript" src="/javascript/menu_items.js"></script> +<!-- files with geometry and styles structures --> +<script language="JavaScript" src="/javascript/menu_tpl.js"></script> +<script language="JavaScript"> +<!--// +// Note where menu initialization block is located in HTML document. +// Don't try to position menu locating menu initialization block in +// some table cell or other HTML element. Always put it before </body> +// each menu gets two parameters (see demo files) +// 1. items structure +// 2. geometry structure +new menu (MENU_ITEMS, MENU_POS); +// make sure files containing definitions for these variables are linked to the document +// if you got some javascript error like "MENU_POS is not defined", then you've made syntax +// error in menu_tpl.js file or that file isn't linked properly. + +// also take a look at stylesheets loaded in header in order to set styles +//--> +</script> +</BODY> +</HTML> |