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diff --git a/web/dbdoc/Hipp_M430.RO_0706.html b/web/dbdoc/Hipp_M430.RO_0706.html new file mode 100755 index 00000000..74d6d91b --- /dev/null +++ b/web/dbdoc/Hipp_M430.RO_0706.html @@ -0,0 +1,77 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"> +<HTML><HEAD><TITLE>Hippocampus M430.RO (Oct06) Metadata</TITLE> +<META http-equiv=Content-Type content="text/html; charset=iso-8859-1"> +<LINK REL="stylesheet" TYPE="text/css" HREF='/css/general.css'> +<LINK REL="stylesheet" TYPE="text/css" HREF='/css/menu.css'> +<SCRIPT SRC="/javascript/webqtl.js"></SCRIPT> +</HEAD> +<BODY bottommargin="2" leftmargin="2" rightmargin="2" topmargin="2" text=#000000 bgColor=#ffffff> +<TABLE cellSpacing=5 cellPadding=4 width="100%" border=0> + <TBODY> + <TR> + <script language="JavaScript" src="/javascript/header.js"></script> + </TR> + <TR> + <TD bgColor=#eeeeee class="solidBorder"> + <Table width= "100%" cellSpacing=0 cellPadding=5><TR> + <!-- Body Start from Here --> + + <TD vAlign=top width="100%" height=200 bgColor=#eeeeee> + <P class="title">Hippocampus M430 R. Overall Data Set<A HREF="/webqtl/main.py?FormID=editHtml"> + <img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A></P> + +<P>Experimental transform of Hippocampus Consortium data set using a new Cell Definition File generated by Dr. Fan Meng at University of Michigan (see http://brainarray.mbni.med.umich.edu/Brainarray/Aboutus/Aboutus.asp). Implementation by Rupert Overall (Max-Delbruck-Centrum, Berlin). + +<P>The ID is the Entrez GeneID. Rupert Overal retransformed the CEL files with the affy.rma package in R using a new CDF file (Mm430_Mm_ENTREZG_8 from the website of Dr. Meng's group in Michigan "<http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp>http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp"). +This bundles together probes belonging to the same Entrez Gene accession together. The raw output of this transform is, in fact, the GeneID with a trailing "_at" which we have removed to simplify translation into Gene Symbols. + + + </TD> + + <!-- Body End Here --> + </TR></TABLE> + </TD> + </TR> + <TR> + <TD align=center bgColor=#ddddff class="solidBorder"> + + + + + <!--Start of footer--> + <TABLE width="90%"> + <script language='JavaScript' src='/javascript/footer.js'></script> + </TABLE> + <!--End of footer--> + + + + + </TD> + </TR> +</TABLE> +<!-- /Footer --> +<!-- menu script itself. you should not modify this file --> +<script language="JavaScript" src="/javascript/menu_new.js"></script> +<!-- items structure. menu hierarchy and links are stored there --> +<script language="JavaScript" src="/javascript/menu_items.js"></script> +<!-- files with geometry and styles structures --> +<script language="JavaScript" src="/javascript/menu_tpl.js"></script> +<script language="JavaScript"> + <!--// + // Note where menu initialization block is located in HTML document. + // Don't try to position menu locating menu initialization block in + // some table cell or other HTML element. Always put it before </body> + // each menu gets two parameters (see demo files) + // 1. items structure + // 2. geometry structure + new menu (MENU_ITEMS, MENU_POS); + // make sure files containing definitions for these variables are linked to the document + // if you got some javascript error like "MENU_POS is not defined", then you've made syntax + // error in menu_tpl.js file or that file isn't linked properly. + + // also take a look at stylesheets loaded in header in order to set styles + //--> +</script> +</BODY> +</HTML> |