diff options
Diffstat (limited to 'web/dbdoc/BXD_GLA_0911.html')
| -rwxr-xr-x | web/dbdoc/BXD_GLA_0911.html | 263 |
1 files changed, 263 insertions, 0 deletions
diff --git a/web/dbdoc/BXD_GLA_0911.html b/web/dbdoc/BXD_GLA_0911.html new file mode 100755 index 00000000..6b272bf8 --- /dev/null +++ b/web/dbdoc/BXD_GLA_0911.html @@ -0,0 +1,263 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
+<HTML>
+<HEAD>
+<TITLE>BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **</TITLE>
+
+<META http-equiv=Content-Type content="text/html; charset=iso-8859-1">
+<META NAME="keywords" CONTENT="genetics, bioinformatics, genome, phenome, gene expression, complex trait analysis, gene mapping, SNP, quantitative trait locus QTL, expression eQTL, WebQTL, Traitnet, Traitnetwork, personalized medicine">
+<META NAME="description" CONTENT ="GeneNetwork is a free scientific web resource used to study relationships between differences in genes, environmental factors, phenotypes, and disease risk." >
+<META NAME="author" CONTENT ="GeneNetwork developers" >
+<META NAME="geo.placename" CONTENT ="Memphis, TN" >
+<META NAME="geo.region" CONTENT="US-TN">
+
+<LINK REL="stylesheet" TYPE="text/css" HREF='/css/general.css'>
+<LINK REL="stylesheet" TYPE="text/css" HREF='/css/menu.css'>
+<link rel="stylesheet" media="all" type="text/css" href="/css/tabbed_pages.css" />
+<LINK REL="apple-touch-icon" href="/images/ipad_icon3.png" />
+<link type="text/css" href='/css/custom-theme/jquery-ui-1.8.12.custom.css' rel='Stylesheet' />
+<link type="text/css" href='/css/tab_style.css' rel='Stylesheet' />
+
+<script type="text/javascript" src="/javascript/jquery-1.5.2.min.js"></script>
+<SCRIPT SRC="/javascript/webqtl.js"></SCRIPT>
+<SCRIPT SRC="/javascript/dhtml.js"></SCRIPT>
+<SCRIPT SRC="/javascript/jqueryFunction.js"></SCRIPT>
+<script src="/javascript/tabbed_pages.js" type="text/javascript"></script>
+<script src="/javascript/jquery-ui-1.8.12.custom.min.js" type="text/javascript"></script>
+
+
+<script type="text/javascript">
+ var _gaq = _gaq || [];
+ _gaq.push(['_setAccount', 'UA-3782271-1']);
+ _gaq.push(['_trackPageview']);
+ (function() {
+ var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
+ ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
+ var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
+ })();
+</script>
+</HEAD>
+<BODY bottommargin="2" leftmargin="2" rightmargin="2" topmargin="2" text=#000000 bgColor=#ffffff >
+
+<TABLE cellSpacing=5 cellPadding=4 width="100%" border=0>
+ <TBODY>
+ <!-- Start of header -->
+ <TR>
+
+
+<TD width=30 rowSpan=5> </TD>
+<TD bgColor=#ffffff NOWRAP="yes" width="100%" class="solidBorder">
+ <Table width= "100%" cellSpacing=0 cellPadding=0>
+ <TR>
+ <TD width= "100%" id="smallsize">
+ <a href="/">
+ <IMG src="/images/upload/GeneNet_Banner2009c.png" border="0">
+ </a>
+ </TD>
+ <TD valign="bottom">
+ <A HREF="http://www.touchgraph.com/TGGoogleBrowser.php?start=genenetwork.org&signed=false" target="_blank">
+ <IMG SRC="/images/upload/NetworkLogo.png" width="101" height="73" border="0">
+ </a>
+ </td>
+ <TD valign="bottom">
+ <IMG src="/images/webqtllogo2.gif" alt="WebQTL" border="0">
+ </TD>
+ </TR>
+ </Table>
+</TD>
+<TD width=30 rowSpan=5> </TD>
+</TR>
+
+<TR>
+<!--Home Help Search News Papers Policies Accounts Links-->
+<TD bgColor=#ddddff NOWRAP="yes" class="solidBorder">
+<table width=100% cellSpacing=0 cellPadding=0 border=0>
+<tr>
+<td aligh=left NOWRAP="yes">
+ |
+<Span Id= "menu_grp1" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp1'])" onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp1'])" style="font-size:12px;font-family:verdana;color:#0000ae">
+<Strong>Home</Strong></Span>
+ |
+<Span Id= "menu_grp2" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp2'])" onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp2'])" style="font-size:12px;font-family:verdana;color:#0000ae">
+<Strong>Search</Strong></Span>
+ |
+<Span Id= "menu_grp3" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp3'])" onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp3'])" style="font-size:12px;font-family:verdana;color:#0000ae">
+<Strong>Help</Strong></Span>
+ |
+<Span Id= "menu_grp4" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp4'])" onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp4'])" style="font-size:12px;font-family:verdana;color:#0000ae">
+<A Href="/whats_new.html" style="font-size:12px;font-family:verdana;color:#0000ae">
+<Strong>News</Strong></A></Span>
+ |
+<Span Id= "menu_grp5" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp5'])" onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp5'])" style="font-size:12px;font-family:verdana;color:#0000ae">
+<A Href="/reference.html" style="font-size:12px;font-family:verdana;color:#0000ae">
+<Strong>References</Strong></A></Span>
+ |
+<Span Id= "menu_grp6" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp6'])" onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp6'])" style="font-size:12px;font-family:verdana;color:#0000ae">
+<Strong>Policies</Strong></Span>
+ |
+<Span Id= "menu_grp8" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp8'])" onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp8'])" style="font-size:12px;font-family:verdana;color:#0000ae">
+<A Href="/links.html" style="font-size:12px;font-family:verdana;color:#0000ae">
+<Strong>Links</Strong></A></Span>
+ |
+</td>
+<td align="right" NOWRAP="yes">
+
+
+</td>
+</tr>
+</table>
+</TD>
+
+
+ </TR>
+ <!-- End of header -->
+
+ <!-- Start of body -->
+ <TR>
+ <TD bgColor=#eeeeee class="solidBorder">
+ <Table width= "100%" cellSpacing=0 cellPadding=5>
+ <TR>
+
+ <P class="title">BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **<A HREF="/webqtl/main.py?FormID=editHtml"><img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A><BR><BR>
+
+ Accession number: <A HREF="/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=360">GN360</A></P>
+ <br><br>
+ This is an experimental glaucoma gene expression data set of retinal tissue entered into GeneNetwork by Dr. Eldon Geisert and Robert Williams in which BXD strains have been "highjacked" with experimental and control expression data generated by Dr. Simon John at the Jackson Laboratory. These data were entered into GeneNetwork Sept 20, 2011. Each strain corresponds to a particular retinal sample as shown below:
+
+<OL>
+<LI>BXD1 D2-Gpnmb+ control rep1 (retina)
+<LI>BXD2 D2-Gpnmb+ control rep2 (retina)
+<LI>BXD5 D2-Gpnmb+ control rep3 (retina)
+<LI>BXD6 D2-Gpnmb+ control rep4 (retina)
+<LI>BXD8 D2-Gpnmb+ control rep5 (retina)
+<LI>BXD9 D2-Gpnmb+ control rep6 (retina)
+<LI>BXD11 D2-Gpnmb+ control rep7 (retina)
+<LI>BXD12 D2-Gpnmb+ control rep8 (retina)
+<LI>BXD13 D2-Gpnmb+ control rep9 (retina)
+<LI>BXD14 D2-Gpnmb+ control rep10 (retina)
+<LI>BXD15 No or early 1 rep1 (retina)
+<LI>BXD16 No or early 1 rep2 (retina)
+<LI>BXD18 No or early 1 rep3 (retina)
+<LI>BXD19 No or early 1 rep4 (retina)
+<LI>BXD20 No or early 1 rep5 (retina)
+<LI>BXD22 No or early 1 rep6 (retina)
+<LI>BXD23 No or early 1 rep7 (retina)
+<LI>BXD25 No or early 1 rep8 (retina)
+<LI>BXD27 No or early 1 rep9 (retina)
+<LI>BXD28 No or early 1 rep10 (retina)
+<LI>BXD29 No or early 2 rep1 (retina)
+<LI>BXD30 No or early 2 rep2 (retina)
+<LI>BXD31 No or early 2 rep3 (retina)
+<LI>BXD32 No or early 2 rep4 (retina)
+<LI>BXD33 No or early 2 rep5 (retina)
+<LI>BXD34 No or early 2 rep6 (retina)
+<LI>BXD35 No or early 2 rep7 (retina)
+<LI>BXD36 No or early 2 rep8 (retina)
+<LI>BXD37 No or early 2 rep9 (retina)
+<LI>BXD38 No or early 2 rep10 (retina)
+<LI>BXD39 Moderate rep1 (retina)
+<LI>BXD40 Moderate rep2 (retina)
+<LI>BXD41 Moderate rep3 (retina)
+<LI>BXD42 Moderate rep4 (retina)
+<LI>BXD43 Moderate rep7 (retina)
+<LI>BXD44 Moderate rep8 (retina)
+<LI>BXD45 Moderate rep9 (retina)
+<LI>BXD48 Moderate rep10 (retina)
+<LI>BXD49 Severe rep1 (retina)
+<LI>BXD50 Severe rep2 (retina)
+<LI>BXD51 Severe rep3 (retina)
+<LI>BXD52 Severe rep4 (retina)
+<LI>BXD53 Severe rep5 (retina)
+<LI>BXD54 Severe rep6 (retina)
+<LI>BXD55 Severe rep7 (retina)
+<LI>BXD56 Severe rep8 (retina)
+<LI>BXD59 Severe rep9 (retina)
+<LI>BXD60 Severe rep10 (retina)
+
+</OL>
+
+ <br><br>
+
+ </TR>
+ </TABLE>
+ </TD>
+ </TR>
+ <!-- End of body -->
+
+ <!-- Start of footer -->
+ <TR>
+
+<TD align=center bgColor=#ddddff class="solidBorder">
+<TABLE width="100%">
+<TR>
+ <TD align="left">
+ <A HREF="http://citg.uthsc.edu/" target="_blank">
+ <IMG SRC="/images/upload/CITGLogo.png" alt="CITG" border="0"></A>
+ </TD>
+ <TD align="left" id="smallsize" style="font-size:11px;font-family:verdana;color:black">
+ Service initiated June 15, 2001. Site by
+ <A class="smallsize" HREF="mailto:xzhou15@uthsc.edu">Xiaodong Zhou</A>,
+ <A class="smallsize" HREF="mailto:lyan6@uthsc.edu">Lei Yan</A>,
+ <A class="smallsize" HREF="mailto:nliu4@uthsc.edu" target="_blank">Ning Liu</A>,
+ <A class="smallsize" HREF="mailto:zachary.a.sloan@gmail.com">Zachary Sloan</A>,
+ <A class="smallsize" HREF="mailto:rudi.alberts@helmholtz-hzi.de">Rudi Alberts</A>,
+ <A class="smallsize" HREF="mailto:acenteno@uthsc.edu" target="_blank">Arthur Centeno</A>, Jintao Wang, Lu Lu, Kenneth Manly, Robert W. Williams, and <A class="smallsize" HREF="/credit.html">colleagues</A>.
+ </TD>
+ <TD align="right">
+ <A HREF="http://www.python.org/" target="_blank">
+ <IMG src="/images/upload/PythonLogo.png" alt="Python Powered" border="0"></A>
+ </TD>
+ <TD align="right">
+ <A HREF="http://www.neuinfo.org" target="_blank">
+ <img src="/images/upload/Nif.png" alt="Registered with Nif" border="0"></A>
+ </TD>
+</TR>
+<TR>
+ <TD>
+ </TD>
+ <TD colspan=3 style="font-size:12px;font-family:verdana;color:black">
+ GeneNetwork support from:
+ <UL>
+ <LI><a class="smallsize" target="_blank" href="http://citg.uthsc.edu">The UT Center for Integrative and Translational Genomics</A>
+ <LI><a class="smallsize" target="_blank" href="http://www.iniastress.org">NIAAA</A> Integrative Neuroscience Initiative on Alcoholism (U01AA13499, U24AA13513, U01AA014425)
+ <LI><a class="smallsize" target="_blank" href="http://www.drugabuse.gov/about/organization/Genetics/geneexpression/index.html">NIDA</A>, <a class="smallsize" target="_blank" href="http://www.nimh.nih.gov/">NIMH</A>, and <a class="smallsize" target="_blank" href="http://www.niaaa.nih.gov/">NIAAA</A> (P20-DA 21131)
+ <LI>NCI <a class="smallsize" target="_blank" href="http://emice.nci.nih.gov/">MMHCC</A> (U01CA105417), <a class="smallsize" target="_blank" href="http://www.ncrr.nih.gov/">NCRR</A> <a class="smallsize" target="_blank" href="http://www.nbirn.net/TestBeds/Mouse/index.htm">BIRN</A>, (U24 RR021760)
+ </UL>
+ </TD>
+</TR>
+<TR>
+ <TD colspan=4 id="smallsize" align="left">
+
+ </TD>
+</TR>
+</TABLE>
+</TD>
+
+
+ </TR>
+ <!-- End of footer -->
+</TABLE>
+
+<!-- menu script itself. you should not modify this file -->
+<script language="JavaScript" src="/javascript/menu_new.js"></script>
+<!-- items structure. menu hierarchy and links are stored there -->
+<script language="JavaScript" src="/javascript/menu_items.js"></script>
+<!-- files with geometry and styles structures -->
+<script language="JavaScript" src="/javascript/menu_tpl.js"></script>
+<script language="JavaScript">
+ <!--//
+ // Note where menu initialization block is located in HTML document.
+ // Don't try to position menu locating menu initialization block in
+ // some table cell or other HTML element. Always put it before </body>
+ // each menu gets two parameters (see demo files)
+ // 1. items structure
+ // 2. geometry structure
+ new menu (MENU_ITEMS, MENU_POS);
+ // make sure files containing definitions for these variables are linked to the document
+ // if you got some javascript error like "MENU_POS is not defined", then you've made syntax
+ // error in menu_tpl.js file or that file isn't linked properly.
+
+ // also take a look at stylesheets loaded in header in order to set styles
+ //-->
+</script>
+</BODY>
+</HTML>
|