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diff --git a/web/dbResults.html b/web/dbResults.html new file mode 100755 index 00000000..835c8372 --- /dev/null +++ b/web/dbResults.html @@ -0,0 +1,143 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"> +<HTML><HEAD><TITLE>GenomeGraph / The GeneNetwork</TITLE> +<META http-equiv=Content-Type content="text/html; charset=iso-8859-1"> +<LINK REL="stylesheet" TYPE="text/css" HREF='css/general.css'> +<LINK REL="stylesheet" TYPE="text/css" HREF='css/menu.css'> +<SCRIPT SRC="javascript/webqtl.js"></SCRIPT> + +</HEAD> +<BODY bottommargin="2" leftmargin="2" rightmargin="2" topmargin="2" text=#000000 bgColor=#ffffff onload="javascript:initialDatasetSelection()"> +<TABLE cellSpacing=5 cellPadding=4 width="100%" border=0> + <TBODY> + <TR> + <script language="JavaScript" src="/javascript/header.js"></script> + </TR> + <TR> + <TD bgColor=#eeeeee class="solidBorder"> + <Table width= "100%" cellSpacing=0 cellPadding=5><TR> + <!-- Body Start from Here --> + <TD vAlign=top width="45%" bgColor=#eeeeee> + <P class="title">Introduction <A HREF="webqtl/main.py?FormID=editHtml"> + <img src="images/modify.gif" alt="modify this page" border= 0 valign="middle"></A></P> + + +<BLOCKQUOTE> + +<A HREF="gghelp.html" target="_empty" class="fs14">GenomeGraph</A> is designed to help discover genetic sources of variation in trait and transcript expression at a global level. Choose a database and click on the Mapping button. The y-axis marks the physical locations of genes from which transcripts are synthesized. In contrast, the x-axis plots the locations of the highest <A HREF="glossary.html#L" target="_empty" class="fs14">LRS</A> values associated with each trait or transcript; in essence, the location of the best QTL. The false discovery rate (FDR) can be tuned from 1 (all data shown) to values between 0.1 and 0.01 (only transcripts with significant QTLs shown). + +<P>Note that many data set results are still being computed. You may encounter an "in progress" message. + +<P>For a more complete explanation see Chesler, Lu and colleagues (<A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15711545" class="fs14" target="_empty">2005</A>), or the <A HREF="gghelp.html" target="_empty" class="fs14">GenomeGraph Help</A> page. + </BLOCKQUOTE> + + </TD> + <TD vAlign=top width="55%" bgColor=#eeeeee> + <P class="title">Choose Data Set</P> + <Center> + <Form METHOD="POST" ACTION="webqtl/main.py" ENCTYPE="multipart/form-data" NAME="SEARCHFORM"> + <TABLE width="90%"> + + <TR> + <TD align=right height=40> + <P>Choose Species</P> + </TD> + <TD width=20> + </TD> + <TD NOWRAP> + <DIV Id="menu0"> + <Select NAME="species" size=1 id="species" onChange="fillOptions('species');"> + </Select> + </DIV> + </TD> + </TR> + + + <TR> + <TD align=right height=40> + <P>Group</P> + </TD> + <TD width=20> + </TD> + <TD NOWRAP> + <DIV Id="menu1"> + <Select NAME="cross" size=1 id="cross" onChange="fillOptions('cross');"> + </Select> + <input type="button" class="button" value="Info" onCLick="javascript:crossinfo();"> + </DIV> + </TD> + </TR> + + <TR> + <TD align=right height=40> + <P>Type</P> + </TD> + <TD width=20> + </TD> + <TD NOWRAP> + <DIV Id="menu2"><Select NAME="tissue" size=1 id="tissue" onChange="fillOptions('tissue');"> + </Select> + </DIV> + </TD> + </TR> + + <TR> + <TD align=right height=40> + <P>Database</P> + </TD> + <TD width=20> + </TD> + <TD NOWRAP> + <DIV Id="menu3"> + <Select NAME="database" size=1 id="database"> + </Select> + <input type="button" class="button" value="Info" onCLick="javascript:databaseinfo();"> + </DIV> + </TD> + </TR> + + <TR> + <TD colspan=3 align="center" height=50> + <input type="button" CLASS="button" value="Mapping" onClick="databaseFunc(this.form, 'transciptMapping');"> + <input type="button" CLASS="button" value="Download" onClick="databaseFunc(this.form, 'genAllDbResult', 'Generating Excel file, please wait.');"> + <input type="button" CLASS="button" value="Set To Default" onClick="setDefault(this.form);"> + </TD> + </TR> + + </TABLE> + <INPUT TYPE="hidden" NAME="FormID" VALUE="searchResult"> + <INPUT TYPE="hidden" NAME="RISet" VALUE="BXD"> + <SCRIPT src="/javascript/selectDatasetMenu.js"></SCRIPT> + </Form> + </center> + </TD> + </TR></TABLE> + </TD> + </TR> + <TR> + <TD align=center bgColor=#ddddff class="solidBorder"> + <!--Start of footer--> + <TABLE width="90%"> + <script language='JavaScript' src='/javascript/footer.js'></script> + </TABLE> + <!--End of footer--> + </TD> + </TR> +</TABLE> +<!-- /Footer --> +<script language="JavaScript" src="javascript/menu_new.js"></script> +<script language="JavaScript" src="javascript/menu_items.js"></script> +<script language="JavaScript" src="javascript/menu_tpl.js"></script> +<script language="JavaScript"> + <!--// + new menu (MENU_ITEMS, MENU_POS); + //--> +</script> + +<script src="http://www.google-analytics.com/urchin.js" type="text/javascript"> +</script> +<script type="text/javascript"> +_uacct = "UA-3782271-1"; +urchinTracker(); +</script> +</BODY> +</HTML> |