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-rw-r--r--test/requests/mapping_tests.py43
-rwxr-xr-xtest/requests/test-website.py14
2 files changed, 51 insertions, 6 deletions
diff --git a/test/requests/mapping_tests.py b/test/requests/mapping_tests.py
new file mode 100644
index 00000000..fd20df11
--- /dev/null
+++ b/test/requests/mapping_tests.py
@@ -0,0 +1,43 @@
+from __future__ import print_function
+import re
+import json
+import requests
+from lxml.html import fromstring
+
+def get_data(list_item):
+ try:
+ value = list_item[1]
+ except:
+ value = None
+ #print("list_item:", list_item, "==>", value)
+ return value
+
+def load_data_from_file():
+ filename = "../test/data/input/mapping/1435395_s_at_HC_M2_0606_P.json"
+ file_handle = open(filename, "r")
+ file_data = json.loads(file_handle.read().encode("utf-8"))
+ return file_data
+
+def check_pylmm_tool_selection(host, data):
+ data["method"] = "pylmm"
+ page = requests.post(host+"/marker_regression", data=data)
+ doc = fromstring(page.text)
+ form = doc.forms[1]
+ assert form.fields["dataset"] == "HC_M2_0606_P"
+ assert form.fields["value:BXD1"] == "15.034" # Check value in the file
+
+def check_R_qtl_tool_selection(host, data):
+ pass
+
+def check_CIM_tool_selection(host, data):
+ pass
+
+def check_mapping(args_obj, parser):
+ print("")
+ print("Checking mapping")
+
+ host = args_obj.host
+ data = load_data_from_file()
+ check_pylmm_tool_selection(host, data)
+ check_R_qtl_tool_selection(host, data)
+ check_CIM_tool_selection(host, data)
diff --git a/test/requests/test-website.py b/test/requests/test-website.py
index f65c3fc8..2bef6eb1 100755
--- a/test/requests/test-website.py
+++ b/test/requests/test-website.py
@@ -4,9 +4,10 @@
#
# Mostly to pick up the Guix GN2_PROFILE and python modules
from __future__ import print_function
-from main_web_functionality import check_main_web_functionality
-from link_checker import check_links
import argparse
+from link_checker import check_links
+from mapping_tests import check_mapping
+from main_web_functionality import check_main_web_functionality
print("Mechanical Rob firing up...")
@@ -15,6 +16,7 @@ def run_all(args_obj, parser):
print("Running all tests.")
check_main_web_functionality(args_obj, parser)
check_links(args_obj, parser)
+ check_mapping(args_obj, parser)
# TODO: Add other functions as they are created.
def print_help(args_obj, parser):
@@ -51,14 +53,14 @@ parser.add_argument("-f", "--main-functionality", dest="accumulate"
, default=print_help
, help="Checks for main web functionality.")
+parser.add_argument("-m", "--mapping", dest="accumulate"
+ , action="store_const", const=check_mapping, default=print_help
+ , help="Checks for mapping.")
+
# parser.add_argument("-n", "--navigation", dest="accumulate"
# , action="store_const", const=check_navigation, default=print_help
# , help="Checks for navigation.")
-# parser.add_argument("-m", "--mapping", dest="accumulate"
-# , action="store_const", const=check_mapping, default=print_help
-# , help="Checks for mapping.")
-
# parser.add_argument("-s", "--skip-broken", dest="accumulate"
# , action="store_const", const=dummy, default=print_help
# , help="Skip tests that are known to be broken.")