diff options
Diffstat (limited to 'test')
-rw-r--r-- | test/__init__.py | 0 | ||||
-rw-r--r-- | test/requests/main_web_functionality.py | 3 | ||||
-rw-r--r-- | test/requests/mapping_tests.py | 12 | ||||
-rwxr-xr-x | test/requests/test-website.py | 11 | ||||
-rw-r--r-- | test/unittest/__init__.py | 0 | ||||
-rw-r--r-- | test/unittest/base/__init__.py | 0 | ||||
-rw-r--r-- | test/unittest/base/test_general_object.py | 21 | ||||
-rw-r--r-- | test/unittest/test_registration.py | 27 |
8 files changed, 30 insertions, 44 deletions
diff --git a/test/__init__.py b/test/__init__.py new file mode 100644 index 00000000..e69de29b --- /dev/null +++ b/test/__init__.py diff --git a/test/requests/main_web_functionality.py b/test/requests/main_web_functionality.py index 7b89b833..d070dab9 100644 --- a/test/requests/main_web_functionality.py +++ b/test/requests/main_web_functionality.py @@ -20,8 +20,9 @@ def check_search_page(host): , search_terms_or="" , search_terms_and="MEAN=(15 16) LRS=(23 46)") result = requests.get(host+"/search", params=data) - found = result.text.find("/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P") + found = result.text.find("records are shown below") assert(found >= 0) + assert(result.status_code == 200) print("OK") check_traits_page(host, "/show_trait?trait_id=1435395_s_at&dataset=HC_M2_0606_P") diff --git a/test/requests/mapping_tests.py b/test/requests/mapping_tests.py index 6de81bfe..5748a2a3 100644 --- a/test/requests/mapping_tests.py +++ b/test/requests/mapping_tests.py @@ -15,9 +15,9 @@ def check_R_qtl_tool_selection(host, data): print("") print("R/qtl mapping tool selection") headers = {"Content-Type": "application/x-www-form-urlencoded"} - page = requests.post(host+"/marker_regression", data=data, headers=headers) + page = requests.post(host+"/loading", data=data, headers=headers) doc = fromstring(page.text) - form = doc.forms[1] + form = doc.forms[0] assert form.fields["dataset"] == "HC_M2_0606_P" assert form.fields["value:BXD1"] == "15.034" @@ -25,9 +25,9 @@ def check_CIM_tool_selection(host, data): print("") print("CIM mapping tool selection (using reaper)") data["method"] = "reaper" - page = requests.post(host+"/marker_regression", data=data) + page = requests.post(host+"/loading", data=data) doc = fromstring(page.text) - form = doc.forms[1] + form = doc.forms[0] assert form.fields["dataset"] == "HC_M2_0606_P" assert form.fields["value:BXD1"] == "15.034" @@ -37,6 +37,6 @@ def check_mapping(args_obj, parser): host = args_obj.host data = load_data_from_file() - check_pylmm_tool_selection(host, copy.deepcopy(data)) - check_R_qtl_tool_selection(host, copy.deepcopy(data)) ## Why does this fail? + # check_pylmm_tool_selection(host, copy.deepcopy(data)) ## Not defined + check_R_qtl_tool_selection(host, copy.deepcopy(data)) check_CIM_tool_selection(host, copy.deepcopy(data)) diff --git a/test/requests/test-website.py b/test/requests/test-website.py index b2e09bc4..74057e7f 100755 --- a/test/requests/test-website.py +++ b/test/requests/test-website.py @@ -104,16 +104,7 @@ parser.add_argument("-i", "--integration-tests", dest="accumulate" , action="store_const", const=integration_tests, default=print_help , help="Runs integration tests.") -# Navigation tests deactivated since system relies on Javascript -# parser.add_argument("-n", "--navigation", dest="accumulate" -# , action="store_const", const=check_navigation, default=print_help -# , help="Checks for navigation.") - -# parser.add_argument("-s", "--skip-broken", dest="accumulate" -# , action="store_const", const=dummy, default=print_help -# , help="Skip tests that are known to be broken.") - args = parser.parse_args() -# print("The arguments object: ", args) + args.accumulate(args, parser) diff --git a/test/unittest/__init__.py b/test/unittest/__init__.py new file mode 100644 index 00000000..e69de29b --- /dev/null +++ b/test/unittest/__init__.py diff --git a/test/unittest/base/__init__.py b/test/unittest/base/__init__.py new file mode 100644 index 00000000..e69de29b --- /dev/null +++ b/test/unittest/base/__init__.py diff --git a/test/unittest/base/test_general_object.py b/test/unittest/base/test_general_object.py new file mode 100644 index 00000000..699cb079 --- /dev/null +++ b/test/unittest/base/test_general_object.py @@ -0,0 +1,21 @@ +import unittest + +from base.GeneralObject import GeneralObject + + +class TestGeneralObjectTests(unittest.TestCase): + """ + Test the GeneralObject base class + """ + + def test_object_contents(self): + """Test whether base contents are stored properly""" + test_obj = GeneralObject("a", "b", "c") + self.assertEqual("abc", ''.join(test_obj.contents)) + + def test_object_dict(self): + """Test whether the base class is printed properly""" + test_obj = GeneralObject("a", name="test", value=1) + self.assertEqual(str(test_obj), "value = 1\nname = test\n") + self.assertEqual( + repr(test_obj), "value = 1\nname = test\ncontents = ['a']\n") diff --git a/test/unittest/test_registration.py b/test/unittest/test_registration.py deleted file mode 100644 index 98d0cdff..00000000 --- a/test/unittest/test_registration.py +++ /dev/null @@ -1,27 +0,0 @@ -# Run test with something like -# -# env GN2_PROFILE=~/opt/gn-latest GENENETWORK_FILES=$HOME/gn2_data ./bin/genenetwork2 ./etc/default_settings.py -c ../test/unittest/test_registration.py -# - -import unittest -import mock.es_double as es -from wqflask.user_manager import RegisterUser - -class TestRegisterUser(unittest.TestCase): - def setUp(self): - self.es = es.ESDouble() - - def testRegisterUserWithCorrectData(self): - data = { - "email_address": "user@example.com" - , "full_name": "A.N. Other" - , "organization": "Some Organisation" - , "password": "testing" - , "password_confirm": "testing" - , "es_connection": self.es - } - result = RegisterUser(data) - self.assertEqual(len(result.errors), 0, "Errors were not expected") - -if __name__ == "__main__": - unittest.main() |