diff options
Diffstat (limited to 'scripts')
| -rwxr-xr-x | scripts/maintenance/delete_genotypes.py | 2 | ||||
| -rwxr-xr-x | scripts/maintenance/load_phenotypes.py | 10 |
2 files changed, 6 insertions, 6 deletions
diff --git a/scripts/maintenance/delete_genotypes.py b/scripts/maintenance/delete_genotypes.py index 060640e1..b7f83758 100755 --- a/scripts/maintenance/delete_genotypes.py +++ b/scripts/maintenance/delete_genotypes.py @@ -18,7 +18,7 @@ def main(argv): # datafile datafile = open(config.get('config', 'datafile'), 'r') datafile = csv.reader(datafile, delimiter='\t', quotechar='"') - datafile.next() + next(datafile) delrowcount = 0 for row in datafile: if len(row) == 0: diff --git a/scripts/maintenance/load_phenotypes.py b/scripts/maintenance/load_phenotypes.py index 61d527d4..759d2eec 100755 --- a/scripts/maintenance/load_phenotypes.py +++ b/scripts/maintenance/load_phenotypes.py @@ -22,22 +22,22 @@ def main(argv): # datafile datafile = open(config.get('config', 'datafile'), 'r') phenotypedata = csv.reader(datafile, delimiter='\t', quotechar='"') - phenotypedata_head = phenotypedata.next() + phenotypedata_head = next(phenotypedata) print(("phenotypedata head:\n\t%s" % phenotypedata_head)) strainnames = phenotypedata_head[1:] strains = datastructure.get_strains_bynames(inbredsetid=inbredsetid, strainnames=strainnames, updatestrainxref="yes") # metafile metafile = open(config.get('config', 'metafile'), 'r') phenotypemeta = csv.reader(metafile, delimiter='\t', quotechar='"') - phenotypemeta_head = phenotypemeta.next() + phenotypemeta_head = next(phenotypemeta) print(("phenotypemeta head:\n\t%s" % phenotypemeta_head)) print() # load for metarow in phenotypemeta: # - datarow_value = phenotypedata.next() - datarow_se = phenotypedata.next() - datarow_n = phenotypedata.next() + datarow_value = next(phenotypedata) + datarow_se = next(phenotypedata) + datarow_n = next(phenotypedata) # Phenotype sql = """ INSERT INTO Phenotype |