diff options
Diffstat (limited to 'scripts/maintenance/readProbeSetMean_v7.py')
-rwxr-xr-x | scripts/maintenance/readProbeSetMean_v7.py | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/scripts/maintenance/readProbeSetMean_v7.py b/scripts/maintenance/readProbeSetMean_v7.py index a540796a..43f084f4 100755 --- a/scripts/maintenance/readProbeSetMean_v7.py +++ b/scripts/maintenance/readProbeSetMean_v7.py @@ -60,15 +60,15 @@ print('Checking if each line have same number of members') GeneList = [] isCont = 1 header = fp.readline() -header = string.split(string.strip(header), '\t') -header = list(map(string.strip, header)) +header = header.strip().split('\t') +header = [x.strip() for x in header] nfield = len(header) line = fp.readline() kj = 0 while line: - line2 = string.split(string.strip(line), '\t') - line2 = list(map(string.strip, line2)) + line2 = line.strip().split('\t') + line2 = [x.strip() for x in line2] if len(line2) != nfield: print(("Error : " + line)) isCont = 0 @@ -98,8 +98,8 @@ print('Checking if each strain exist in database') isCont = 1 fp.seek(0) header = fp.readline() -header = string.split(string.strip(header), '\t') -header = list(map(string.strip, header)) +header = header.strip().split('\t') +header = [x.strip() for x in header] header = list(map(translateAlias, header)) header = header[dataStart:] Ids = [] @@ -126,8 +126,8 @@ print('Check if each ProbeSet exist in database') ##---- find PID is name or target ----## line = fp.readline() line = fp.readline() -line2 = string.split(string.strip(line), '\t') -line2 = list(map(string.strip, line2)) +line2 = line.strip().split('\t') +line2 = [x.strip() for x in line2] PId = line2[0] db.execute('select Id from ProbeSet where Name="%s" and ChipId=%d' % @@ -222,8 +222,8 @@ kj = 0 values1 = [] values2 = [] while line: - line2 = string.split(string.strip(line), '\t') - line2 = list(map(string.strip, line2)) + line2 = line.strip().split('\t') + line2 = [x.strip() for x in line2] PId = line2[0] recordId = NameIds[PId] |