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-rw-r--r--gn2/wqflask/__init__.py2
-rw-r--r--gn2/wqflask/static/new/javascript/show_trait.js2
-rw-r--r--gn2/wqflask/templates/gn_editor.html4
-rw-r--r--gn2/wqflask/templates/gn_editor_commit.html8
-rw-r--r--gn2/wqflask/templates/gn_editor_results_page.html31
-rw-r--r--gn2/wqflask/templates/mapping_results.html10
-rw-r--r--gn2/wqflask/templates/show_trait_calculate_correlations.html2
-rw-r--r--gn2/wqflask/templates/show_trait_statistics.html2
8 files changed, 31 insertions, 30 deletions
diff --git a/gn2/wqflask/__init__.py b/gn2/wqflask/__init__.py
index d959598d..af386317 100644
--- a/gn2/wqflask/__init__.py
+++ b/gn2/wqflask/__init__.py
@@ -110,7 +110,7 @@ app.jinja_env.globals.update(
 
 
 # Registering blueprints
-app.register_blueprint(gn_docs_blueprint, url_prefix="/gn_docs")
+app.register_blueprint(gn_docs_blueprint, url_prefix="/gn-docs")
 app.register_blueprint(glossary_blueprint, url_prefix="/glossary")
 app.register_blueprint(references_blueprint, url_prefix="/references")
 app.register_blueprint(links_blueprint, url_prefix="/links")
diff --git a/gn2/wqflask/static/new/javascript/show_trait.js b/gn2/wqflask/static/new/javascript/show_trait.js
index edb2cfab..6d77e130 100644
--- a/gn2/wqflask/static/new/javascript/show_trait.js
+++ b/gn2/wqflask/static/new/javascript/show_trait.js
@@ -68,7 +68,7 @@ statTableRows.push(
   }, {
     vn: "interquartile",
     pretty: "<font color='black'>Interquartile Range</font>",
-    url: "http://www.genenetwork.org/glossary.html#Interquartile",
+    url: "{{ url_for('gn_docs_blueprint.glossary') }}#Interquartile",
     digits: 3
   }, {
     vn: "skewness",
diff --git a/gn2/wqflask/templates/gn_editor.html b/gn2/wqflask/templates/gn_editor.html
index d89aaf0a..6f4685ac 100644
--- a/gn2/wqflask/templates/gn_editor.html
+++ b/gn2/wqflask/templates/gn_editor.html
@@ -29,10 +29,10 @@
                                    hx-get="/editor/commit"
                                    hx-target="#output"
                                    hx-trigger="click"
-                                   hx-swap="innerHTML">Commit</a>
+                                   hx-swap="innerHTML">Save</a>
                             </li>
                             <li>
-                                <a hx-trigger="click" id="diffBtn"  hx-swap="innerHTML">Diff</a>
+                                <a hx-trigger="click" id="diffBtn"  hx-swap="innerHTML">Show Diff</a>
                             </li>
                             <li>
                                 <a href="#"
diff --git a/gn2/wqflask/templates/gn_editor_commit.html b/gn2/wqflask/templates/gn_editor_commit.html
index 2eb3e60c..6006f6d2 100644
--- a/gn2/wqflask/templates/gn_editor_commit.html
+++ b/gn2/wqflask/templates/gn_editor_commit.html
@@ -3,7 +3,7 @@
         <div>
             <div>
                 <h2>
-                    <i>Commit your Changes</i>
+                    <i>Save your Changes</i>
                 </h2>
             </div>
         </div>
@@ -11,7 +11,7 @@
         <div>
             <div class="row">
                 <label class="col-sm-8" for="message">
-                    <i>*Commit Message*</i>
+                    <i>*Describe edit*</i>
                 </label>
             </div>
             <br>
@@ -24,9 +24,9 @@
         <br>
         <div class="row">
             <button id="btn-commit"
-                    class="btn btn-primary col-lg-3 col-lg-offset-1 col-sm-4 col-sm-offset-1">Commit</button>
+                    class="btn btn-primary col-lg-3 col-lg-offset-1 col-sm-4 col-sm-offset-1">Save</button>
             <button id="btn-diff"
-                    class="btn col-lg-3 col-lg-offset-1  col-sm-4 col-sm-offset-1">Show Diff</button>
+                    class="btn col-lg-3 col-lg-offset-1  col-sm-4 col-sm-offset-1">Show Edit Diff</button>
         </div>
         <br>
         <div id="diff_page"></div>
diff --git a/gn2/wqflask/templates/gn_editor_results_page.html b/gn2/wqflask/templates/gn_editor_results_page.html
index 6eaeb941..4f169a66 100644
--- a/gn2/wqflask/templates/gn_editor_results_page.html
+++ b/gn2/wqflask/templates/gn_editor_results_page.html
@@ -1,13 +1,5 @@
 <section classs="row commit-content"  style="padding-top:25px">
     <div class="col-sm-10 col-sm-offset-1">
-        <div>
-            <div>
-                <h2>
-                    <i>Results status - {{ status }}</i>
-                </h2>
-            </div>
-        </div>
-        <br>
         {% if error %}
             <h1>
                 Error-type: <mark style="font-family: 'Linux Libertine','Georgia','Times','Source Serif Pro',serif"><b><i>{{ error }}</i></b></mark>
@@ -18,18 +10,27 @@
             </h3>
         {% else %}
             <div>
+                <div class="lead">
+                    <h3>
+                        Save results message:
+                        <mark style="font-family: 'Linux Libertine','Georgia','Times','Source Serif Pro',serif"><b>
+                            {% if status == '200' %}
+                                <i>Everything is up to date; No changes to Save</i>
+                            {% elif status == '201' %}
+                                <i> Saved your changes Successfully </i>
+                            {% else %}
+                                {{ message }}
+                            {% endif %}
+                        </b></mark>
+                    </h3>
+                </div>
+                <br />
                 <h3>
-                    New Commit Sha: <span class="lead">
+                    New Edit Sha: <span class="lead">
                     <mark style="font-family: 'Linux Libertine','Georgia','Times','Source Serif Pro',serif"><b><i>{{ commit_sha }}</i></b></mark>
                 </span>
             </h3>
             <br />
-            <div class="lead">
-                <h3>
-                    Commit Message:
-                    <mark style="font-family: 'Linux Libertine','Georgia','Times','Source Serif Pro',serif"><b><i>{{ message }}</i></b></mark>
-                </h3>
-            </div>
         </div>
     {% endif %}
     <br>
diff --git a/gn2/wqflask/templates/mapping_results.html b/gn2/wqflask/templates/mapping_results.html
index 2fed79c1..2b1660fd 100644
--- a/gn2/wqflask/templates/mapping_results.html
+++ b/gn2/wqflask/templates/mapping_results.html
@@ -116,7 +116,7 @@
                     <label class="radio-inline">
                       <input type="radio" name="LRSCheck" value="{% if LRS_LOD == "-logP" %}-logP{% else %}LOD{% endif %}" {% if LRS_LOD == "LOD" or LRS_LOD == "-logP" %}checked{% endif %}>{% if LRS_LOD == "-logP" %}-logP{% else %}LOD{% endif %}
                     </label>
-                    <a href="https://genenetwork.org/glossary.html#LOD" target="_blank">
+                    <a href="{{ url_for('gn_docs_blueprint.glossary') }}#LOD" target="_blank">
                       <sup style="color:#f00"> ?</sup>
                     </a>
                   </td>
@@ -158,27 +158,27 @@
             <div class="col-xs-4" style="padding: 0px;">
                   {% if (mapping_method == "reaper" or mapping_method == "rqtl_geno") and nperm > 0 %}
                   <input type="checkbox" name="permCheck" class="checkbox" style="display: inline; margin-top: 0px;" {% if permChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Permutation Test 
-                    <a href="http://genenetwork.org/glossary.html#Permutation" target="_blank">
+                    <a href="{{ url_for('gn_docs_blueprint.glossary') }}#Permutation" target="_blank">
                       <sup style="color:#f00"> ?</sup>
                     </a>
                   <br>
                   {% endif %}
                   {% if mapping_method == "reaper" and nboot > 0 %}
                   <input type="checkbox" name="bootCheck" class="checkbox" style="display: inline; margin-top: 0px;" {% if bootChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Bootstrap Test 
-                    <a href="http://genenetwork.org/glossary.html#bootstrap" target="_blank">
+                    <a href="{{ url_for('gn_docs_blueprint.glossary') }}#bootstrap" target="_blank">
                       <sup style="color:#f00"> ?</sup>
                     </a>
                   <br>
                   {% endif %}
                   {% if mapping_method == "reaper" %}
                   <input type="checkbox" name="additiveCheck" class="checkbox" style="display: inline; margin-top: 0px;" {% if additiveChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Allele Effects
-                    <a href="http://genenetwork.org/glossary.html#additive" target="_blank">
+                    <a href="{{ url_for('gn_docs_blueprint.glossary') }}#additive" target="_blank">
                       <sup style="color:#f00"> ?</sup>
                     </a>
                   <br>
                   {% endif %}
                   <input type="checkbox" name="showSNP" class="checkbox" style="display: inline; margin-top: 0px;" {% if SNPChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">SNP Track </span>
-                    <a href="http://genenetwork.org/glossary.html#snpSeismograph" target="_blank">
+                    <a href="{{ url_for('gn_docs_blueprint.glossary') }}#snpSeismograph" target="_blank">
                       <sup style="color:#f00"> ?</sup>
                     </a>
                     <span style="color:red;">*</span>
diff --git a/gn2/wqflask/templates/show_trait_calculate_correlations.html b/gn2/wqflask/templates/show_trait_calculate_correlations.html
index d2e6624e..2f78a095 100644
--- a/gn2/wqflask/templates/show_trait_calculate_correlations.html
+++ b/gn2/wqflask/templates/show_trait_calculate_correlations.html
@@ -148,7 +148,7 @@
                     Semantic Gene Organizer</span>
                     and human, rat, and mouse data from PubMed.
                     Values are ranked by Lit r, but Sample r and Tissue r are also displayed.<br>
-                    <a href="http://genenetwork.org/glossary.html#Literature">More on using Lit r</a></dd>
+                    <a href="{{ url_for('gn_docs_blueprint.glossary') }}#Literature">More on using Lit r</a></dd>
                 <dt class="map-method-text">Tissue Correlation</dt>
                 <dd>The <a href="http://genenetwork.org/webqtl/main.py?FormID=tissueCorrelation">Tissue Correlation</a>
                     (Tissue r)
diff --git a/gn2/wqflask/templates/show_trait_statistics.html b/gn2/wqflask/templates/show_trait_statistics.html
index 9ee0de5c..d16835e7 100644
--- a/gn2/wqflask/templates/show_trait_statistics.html
+++ b/gn2/wqflask/templates/show_trait_statistics.html
@@ -87,7 +87,7 @@
                     <br>
                     <div>
                         More about <a href="http://en.wikipedia.org/wiki/Normal_probability_plot">Normal Probability Plots</a> and more
-                        about interpreting these plots from the <a href="http://genenetwork.org/glossary.html#normal_probability">glossary</a>
+                        about interpreting these plots from the <a href="{{ url_for('gn_docs_blueprint.glossary') }}#normal_probability">glossary</a>
                     </div>
                 </div>
             </div>
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-10-17 10:18:40 +0000