diff options
Diffstat (limited to 'gn2/wqflask')
29 files changed, 201 insertions, 55 deletions
diff --git a/gn2/wqflask/static/new/css/toots.css b/gn2/wqflask/static/new/css/toots.css new file mode 100644 index 00000000..5ce1b6d5 --- /dev/null +++ b/gn2/wqflask/static/new/css/toots.css @@ -0,0 +1,106 @@ +.toots { + max-width: 400px; + list-style: none; + padding: 0; + font-family: -apple-system, BlinkMacSystemFont, avenir next, avenir, segoe ui, helvetica neue, helvetica, Cantarell, Ubuntu, roboto, noto, arial, sans-serif; +} + +.toot { + border-bottom: 1px solid #ccc; + padding: 1rem; +} + +/* Posting user. */ +.toot .user { + display: flex; + flex-flow: column wrap; + justify-content: space-evenly; + align-content: flex-start; + height: 46px; /* Avatar height. */ + column-gap: 0.5rem; + + text-decoration: none; + color: inherit; +} + +.toot .avatar { + border-radius: 4px; +} + +.toot .display-name { + font-weight: bold; + display: block; +} + +.toot .user:hover .display-name { + text-decoration: underline; +} + +.toot .username { + display: block; + margin-right: 1em; + color: #999; +} + +/* Boosting user is smaller and above the posting user. */ +.toot .boost { + height: 23px; + margin-bottom: 0.25rem; + column-gap: 0.25rem; +} + +.toot .boost:before { + content: "♺"; + font-size: 140%; +} + +.toot .boost .username { + display: none; +} + +.toot .permalink { + text-decoration: none; + display: block; + color: #999; + float: right; +} + +.toot .permalink:hover { + text-decoration: underline; +} + +.toot .body { + clear: both; + margin-top: 1em; +} + +.toot .body a { + overflow-wrap: anywhere; +} + +/* Weird trick to keep the text in the page but not display it. */ +.toot .body .invisible { + display: inline-block; + font-size: 0; + line-height: 0; + width: 0; + height: 0; + position: absolute; +} + +.toot .body .ellipsis::after { + content: "…"; +} + +.toot .attachment { + display: block; + width: 100%; + aspect-ratio: 16 / 9; + border-radius: 4px; +} + +.toot .attachment img { + width: 100%; + height: 100%; + object-fit: cover; +} diff --git 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class="avatar" width="23" height="23" src="${s.avatar}" /> + <span class="display-name">${s.display_name}</span> + <span class="username">@${s.username}</span> + </a>`} + <a class="user" href="${o.account.url}"> + <img class="avatar" width="46" height="46" src="${o.account.avatar}" /> + <span class="display-name">${o.account.display_name}</span> + <span class="username">@${o.account.username}</span> + </a> + <div class="body">${yt(Rt.default.sanitize(o.content))}</div> + ${E.map(p=>Ue` <a + class="attachment" + href="${p.url}" + target="_blank" + rel="noopener noreferrer" + > + <img + class="attachment" + src="${p.preview_url}" + alt="${p.description}" + /> + </a>`)} + </li>`.toString()}async function An(o){let s=o,_=await At(s.href,s.dataset.tootAccountId,Number(s.dataset.tootLimit??5),s.dataset.excludeReplies==="true"),E=document.createElement("ol");E.classList.add("toots"),s.replaceWith(E);for(let p of _){let d=En(p);E.insertAdjacentHTML("beforeend",d)}}function bt(){document.querySelectorAll("a.mastodon-feed").forEach(An)}bt();})(); +/*! Bundled license information: + +dompurify/dist/purify.js: + (*! @license DOMPurify 3.0.6 | (c) Cure53 and other contributors | Released under the Apache license 2.0 and Mozilla Public License 2.0 | github.com/cure53/DOMPurify/blob/3.0.6/LICENSE *) +*/ diff --git a/gn2/wqflask/templates/base.html b/gn2/wqflask/templates/base.html index 48b57afb..0009e4d8 100644 --- a/gn2/wqflask/templates/base.html +++ b/gn2/wqflask/templates/base.html @@ -20,7 +20,7 @@ <link rel="stylesheet" type="text/css" href="/static/new/css/parsley.css" /> <link rel="stylesheet" type="text/css" href="/static/new/css/broken_links.css" /> <link rel="stylesheet" href="/static/new/css/autocomplete.css" /> - <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css"> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/font-awesome.min.css') }}" /> {% block css %} {% endblock %} @@ -459,8 +459,7 @@ required placeholder="Ask More Questions or Topics (E.g Genes) " value='' name=" }); </script> <script src="{{ url_for('js', filename='jquery-cookie/jquery.cookie.js') }}" type="text/javascript"></script> - <script src="https://ajax.googleapis.com/ajax/libs/jqueryui/1.12.1/jquery-ui.min.js"></script> - <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='colorbox/jquery.colorbox-min.js') }}"></script> + <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='jquery-ui/jquery-ui.min.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='colorbox/jquery.colorbox-min.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='js_alt/parsley.min.js') }}"></script> {% block js %} {% endblock %} diff --git a/gn2/wqflask/templates/collections/view.html b/gn2/wqflask/templates/collections/view.html index c850e163..7e74442f 100644 --- a/gn2/wqflask/templates/collections/view.html +++ b/gn2/wqflask/templates/collections/view.html @@ -3,7 +3,7 @@ {% block css %} <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('js', filename='DataTablesExtensions/buttonStyles/css/buttons.dataTables.min.css') }}"> - <link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet" type="text/css" /> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}"/> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> <link rel="stylesheet" type="text/css" href="/static/new/css/trait_list.css" /> {% endblock %} diff --git a/gn2/wqflask/templates/correlation_error_page.html b/gn2/wqflask/templates/correlation_error_page.html index 7d11daf0..0b731ae1 100644 --- a/gn2/wqflask/templates/correlation_error_page.html +++ b/gn2/wqflask/templates/correlation_error_page.html @@ -5,7 +5,7 @@ <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('js', filename='DataTablesExtensions/buttonsBootstrap/css/buttons.bootstrap.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('js', filename='DataTablesExtensions/buttonStyles/css/buttons.dataTables.min.css') }}" /> -<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/all.min.css') }}"/> +<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/font-awesome.min.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/trait_list.css" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> {%endblock%} diff --git a/gn2/wqflask/templates/correlation_page.html b/gn2/wqflask/templates/correlation_page.html index 6baeff35..24eaff1f 100644 --- a/gn2/wqflask/templates/correlation_page.html +++ b/gn2/wqflask/templates/correlation_page.html @@ -4,7 +4,7 @@ <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('js', filename='DataTablesExtensions/buttonsBootstrap/css/buttons.bootstrap.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('js', filename='DataTablesExtensions/buttonStyles/css/buttons.dataTables.min.css') }}"> - <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/all.min.css') }}"/> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/font-awesome.min.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/trait_list.css" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> {% endblock %} @@ -137,7 +137,7 @@ <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/buttons/js/dataTables.buttons.min.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/buttons/js/buttons.html5.min.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/plugins/sorting/natural.js') }}"></script> - <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='fontawesome/js/all.min.js') }}"></script> + <!-- <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='fontawesome/js/all.min.js') }}"></script> --> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/scroller/js/dataTables.scroller.min.js') }}"></script> <script type="text/javascript" src="/static/new/javascript/search_results.js"></script> <script type="text/javascript" src="/static/new/javascript/table_functions.js"></script> diff --git a/gn2/wqflask/templates/edit_case_attributes.html b/gn2/wqflask/templates/edit_case_attributes.html index 3c97b992..f6264818 100644 --- a/gn2/wqflask/templates/edit_case_attributes.html +++ b/gn2/wqflask/templates/edit_case_attributes.html @@ -5,7 +5,7 @@ <link rel="stylesheet" type="text/css" href="/css/DataTables/css/jquery.dataTables.css" /> <link rel="stylesheet" type="text/css" - href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" /> + href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> <style> diff --git a/gn2/wqflask/templates/gn3_ctl_results.html b/gn2/wqflask/templates/gn3_ctl_results.html index c42707f6..2e96b262 100644 --- a/gn2/wqflask/templates/gn3_ctl_results.html +++ b/gn2/wqflask/templates/gn3_ctl_results.html @@ -1,9 +1,9 @@ {% extends "base.html" %} {% block title %}Ctl results{% endblock %} {% block content %} -<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css" integrity="sha384-Gn5384xqQ1aoWXA+058RXPxPg6fy4IWvTNh0E263XmFcJlSAwiGgFAW/dAiS6JXm" crossorigin="anonymous"> <link REL="stylesheet" TYPE="text/css" href="{{ url_for('css', filename='bootstrap/css/bootstrap.css') }}" /> -<link rel="stylesheet" href="https://cdn.datatables.net/1.11.3/css/jquery.dataTables.min.css"> +<link REL="stylesheet" TYPE="text/css" href="{{ url_for('css', filename='bootstrap/css/bootstrap.css') }}" /> +<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> <style type="text/css"> .carousel-control-next, .carousel-control-prev @@ -79,7 +79,7 @@ {% endif %} </div> -<!-- <script src="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/js/bootstrap.min.js" integrity="sha384-JZR6Spejh4U02d8jOt6vLEHfe/JQGiRRSQQxSfFWpi1MquVdAyjUar5+76PVCmYl" crossorigin="anonymous"></script> --> + <script src="{{ url_for('js', filename='bootstrap/js/bootstrap.min.js') }}" type="text/javascript"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.dataTables.min.js') }}"></script> diff --git a/gn2/wqflask/templates/gn3_wgcna_results.html b/gn2/wqflask/templates/gn3_wgcna_results.html index 8a31bf28..b60587c3 100644 --- a/gn2/wqflask/templates/gn3_wgcna_results.html +++ b/gn2/wqflask/templates/gn3_wgcna_results.html @@ -3,9 +3,10 @@ {% block content %} <!-- Start of body --> -<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/xterm/3.14.5/xterm.min.css" integrity="sha512-iLYuqv+v/P4u9erpk+KM83Ioe/l7SEmr7wB6g+Kg1qmEit8EShDKnKtLHlv2QXUp7GGJhmqDI+1PhJYLTsfb8w==" crossorigin="anonymous" referrerpolicy="no-referrer" /> +<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='xterm/xterm.min.css') }}" /> -<link rel="stylesheet" href="https://cdn.datatables.net/1.11.3/css/jquery.dataTables.min.css"> + +<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> <style type="text/css"> @@ -129,7 +130,7 @@ {% block js %} -<script src="https://cdnjs.cloudflare.com/ajax/libs/xterm/3.14.5/xterm.min.js"></script> +<script src="{{ url_for('js', filename='xterm/xterm.min.js') }}" type="text/javascript"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.dataTables.min.js') }}"></script> diff --git a/gn2/wqflask/templates/gnqa.html b/gn2/wqflask/templates/gnqa.html index 51a9d732..f9884633 100644 --- a/gn2/wqflask/templates/gnqa.html +++ b/gn2/wqflask/templates/gnqa.html @@ -48,8 +48,7 @@ <script src="{{ url_for('js', filename='jquery/jquery.min.js') }}" type="text/javascript"></script> - <script src="https://ajax.googleapis.com/ajax/libs/jqueryui/1.12.1/jquery-ui.min.js"></script> -<script type="text/javascript"> + <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='jquery-ui/jquery-ui.min.js') }}"></script><script type="text/javascript"> document.addEventListener('DOMContentLoaded', function() { $("#gnqna_search").keypress(function(event) { diff --git a/gn2/wqflask/templates/gnqa_answer.html b/gn2/wqflask/templates/gnqa_answer.html index 01c94d35..aad804ad 100644 --- a/gn2/wqflask/templates/gnqa_answer.html +++ b/gn2/wqflask/templates/gnqa_answer.html @@ -188,8 +188,7 @@ outline: none; </div> - -<script src="https://use.fontawesome.com/fe459689b4.js"></script> +<!-- <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='fontawesome/js/all.min.js') }}"></script> --> <script src="{{ url_for('js', filename='jquery/jquery.min.js') }}" type="text/javascript"></script> <script type="text/javascript"> diff --git a/gn2/wqflask/templates/gsearch_gene.html b/gn2/wqflask/templates/gsearch_gene.html index 6bc92377..50b48401 100644 --- a/gn2/wqflask/templates/gsearch_gene.html +++ b/gn2/wqflask/templates/gsearch_gene.html @@ -2,7 +2,7 @@ {% block title %}Search Results{% endblock %} {% block css %} <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> - <link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet" type="text/css" /> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}"/> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> {% endblock %} {% block content %} diff --git a/gn2/wqflask/templates/gsearch_pheno.html b/gn2/wqflask/templates/gsearch_pheno.html index a1fef2c8..91ea48a2 100644 --- a/gn2/wqflask/templates/gsearch_pheno.html +++ b/gn2/wqflask/templates/gsearch_pheno.html @@ -2,7 +2,7 @@ {% block title %}Search Results{% endblock %} {% block css %} <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> - <link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet" type="text/css" /> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}"/> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> {% endblock %} {% block content %} diff --git a/gn2/wqflask/templates/index_page.html b/gn2/wqflask/templates/index_page.html index a245b7f3..eee4bd80 100755 --- a/gn2/wqflask/templates/index_page.html +++ b/gn2/wqflask/templates/index_page.html @@ -2,18 +2,22 @@ {% block title %}GeneNetwork{% endblock %} {% block css %} <!-- UIkit CSS --> -<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/uikit@3.7.4/dist/css/uikit.min.css" /> +<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='uikit/css/uikit.min.css') }}"/> + <link rel="stylesheet" href="/static/new/css/index_page.css" /> <link rel="stylesheet" href="/static/new/css/autocomplete.css"/> <!-- UIkit JS --> -<script src="https://cdn.jsdelivr.net/npm/uikit@3.7.4/dist/js/uikit.min.js"></script> -<script src="https://cdn.jsdelivr.net/npm/uikit@3.7.4/dist/js/uikit-icons.min.js"></script> -<script type="module" src="https://esm.sh/emfed"></script> -<link rel="stylesheet" type="text/css" - href="https://cdn.jsdelivr.net/gh/sampsyo/emfed@1/toots.css"> +<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='uikit/js/uikit.min.js') }}"></script> + +<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='uikit/js/uikit-icons.min.js') }}"></script> +<!--locally built emfed package see source file:https://github.com/sampsyo/emfed --> +<script type="module" src="static/new/javascript/emfed.bundle.js"></script> +<link rel="stylesheet" type="text/css" + href="static/new/css/toots.css"> <style TYPE="text/css"> + p.interact { display: none; } diff --git a/gn2/wqflask/templates/list_case_attribute_diffs.html b/gn2/wqflask/templates/list_case_attribute_diffs.html index f5c7482f..bb2658d1 100644 --- a/gn2/wqflask/templates/list_case_attribute_diffs.html +++ b/gn2/wqflask/templates/list_case_attribute_diffs.html @@ -5,7 +5,7 @@ <link rel="stylesheet" type="text/css" href="/css/DataTables/css/jquery.dataTables.css" /> <link rel="stylesheet" type="text/css" - href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" /> + href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> <style> diff --git a/gn2/wqflask/templates/list_case_attribute_diffs_error.html b/gn2/wqflask/templates/list_case_attribute_diffs_error.html index 6ca70984..faeb5d12 100644 --- a/gn2/wqflask/templates/list_case_attribute_diffs_error.html +++ b/gn2/wqflask/templates/list_case_attribute_diffs_error.html @@ -5,7 +5,7 @@ <link rel="stylesheet" type="text/css" href="/css/DataTables/css/jquery.dataTables.css" /> <link rel="stylesheet" type="text/css" - href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" /> + href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> <style> diff --git a/gn2/wqflask/templates/mapping_results.html b/gn2/wqflask/templates/mapping_results.html index 2b6a1e43..b9feb9ca 100644 --- a/gn2/wqflask/templates/mapping_results.html +++ b/gn2/wqflask/templates/mapping_results.html @@ -3,7 +3,8 @@ {% block css %} <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> - <link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.3.1/css/all.css" integrity="sha384-mzrmE5qonljUremFsqc01SB46JvROS7bZs3IO2EmfFsd15uHvIt+Y8vEf7N7fWAU" crossorigin="anonymous"> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/font-awesome.min.css') }}" /> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='purescript-genome-browser/css/purescript-genetics-browser.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/marker_regression.css" /> diff --git a/gn2/wqflask/templates/oauth2/data-list-genotype.html b/gn2/wqflask/templates/oauth2/data-list-genotype.html index c780a583..78939a72 100644 --- a/gn2/wqflask/templates/oauth2/data-list-genotype.html +++ b/gn2/wqflask/templates/oauth2/data-list-genotype.html @@ -8,7 +8,7 @@ <link rel="stylesheet" type="text/css" href="/css/DataTables/css/jquery.dataTables.css" /> <link rel="stylesheet" type="text/css" - href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" /> + href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> {%endblock%} diff --git a/gn2/wqflask/templates/oauth2/data-list-mrna.html b/gn2/wqflask/templates/oauth2/data-list-mrna.html index 0e163235..728e95d4 100644 --- a/gn2/wqflask/templates/oauth2/data-list-mrna.html +++ b/gn2/wqflask/templates/oauth2/data-list-mrna.html @@ -8,7 +8,7 @@ <link rel="stylesheet" type="text/css" href="/css/DataTables/css/jquery.dataTables.css" /> <link rel="stylesheet" type="text/css" - href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" /> + href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> {%endblock%} diff --git a/gn2/wqflask/templates/oauth2/data-list-phenotype.html b/gn2/wqflask/templates/oauth2/data-list-phenotype.html index 8c79c0d6..e5172c70 100644 --- a/gn2/wqflask/templates/oauth2/data-list-phenotype.html +++ b/gn2/wqflask/templates/oauth2/data-list-phenotype.html @@ -8,7 +8,7 @@ <link rel="stylesheet" type="text/css" href="/css/DataTables/css/jquery.dataTables.css" /> <link rel="stylesheet" type="text/css" - href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" /> + href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> {%endblock%} diff --git a/gn2/wqflask/templates/pair_scan_results.html b/gn2/wqflask/templates/pair_scan_results.html index dbd90bc7..fbbb0c61 100644 --- a/gn2/wqflask/templates/pair_scan_results.html +++ b/gn2/wqflask/templates/pair_scan_results.html @@ -71,7 +71,7 @@ var figure_data = {{ figure_data | safe }} </script> -<script src="https://d3js.org/d3.v7.min.js"></script> +<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='d3js/d3.min.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.dataTables.min.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/plugins/sorting/scientific.js') }}"></script> diff --git a/gn2/wqflask/templates/search_result_page.html b/gn2/wqflask/templates/search_result_page.html index c25c5c25..934b6a9d 100644 --- a/gn2/wqflask/templates/search_result_page.html +++ b/gn2/wqflask/templates/search_result_page.html @@ -4,8 +4,8 @@ <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/font-awesome.min.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('js', filename='DataTablesExtensions/buttonStyles/css/buttons.dataTables.min.css') }}"> - <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/all.min.css') }}"/> - <link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet" type="text/css" /> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/font-awesome.min.css') }}" /> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}"/> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> <link rel="stylesheet" type="text/css" href="static/new/css/trait_list.css" /> {% endblock %} @@ -160,7 +160,7 @@ <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/plugins/sorting/natural.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/buttons/js/dataTables.buttons.min.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/buttons/js/buttons.colVis.min.js') }}"></script> - <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='fontawesome/js/all.min.js') }}"></script> + <!-- <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='fontawesome/js/all.min.js') }}"></script> --> <script language="javascript" type="text/javascript" src="/static/new/javascript/search_results.js"></script> <script language="javascript" type="text/javascript" src="/static/new/javascript/table_functions.js"></script> diff --git a/gn2/wqflask/templates/show_trait.html b/gn2/wqflask/templates/show_trait.html index dd054ffc..899ee3d8 100644 --- a/gn2/wqflask/templates/show_trait.html +++ b/gn2/wqflask/templates/show_trait.html @@ -11,7 +11,7 @@ <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='d3-tip/d3-tip.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='nouislider/nouislider.min.css') }}" /> - <link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet" type="text/css" /> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}"/> <link rel="stylesheet" type="text/css" href="/static/new/css/trait_list.css" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> diff --git a/gn2/wqflask/templates/show_trait_error.html b/gn2/wqflask/templates/show_trait_error.html index c924d1f1..550d3f46 100644 --- a/gn2/wqflask/templates/show_trait_error.html +++ b/gn2/wqflask/templates/show_trait_error.html @@ -8,7 +8,7 @@ <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='d3-tip/d3-tip.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='nouislider/nouislider.min.css') }}" /> -<link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet" type="text/css" /> +<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}"/> <link rel="stylesheet" type="text/css" href="/static/new/css/trait_list.css" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> diff --git a/gn2/wqflask/templates/test_correlation_page.html b/gn2/wqflask/templates/test_correlation_page.html index 991773a2..9b0b2828 100644 --- a/gn2/wqflask/templates/test_correlation_page.html +++ b/gn2/wqflask/templates/test_correlation_page.html @@ -4,7 +4,7 @@ <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('js', filename='DataTablesExtensions/buttonsBootstrap/css/buttons.bootstrap.css') }}" /> <link rel="stylesheet" type="text/css" href="{{ url_for('js', filename='DataTablesExtensions/buttonStyles/css/buttons.dataTables.min.css') }}"> - <link rel="stylesheet" type="text/css" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.1/css/all.min.css"> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='fontawesome/css/font-awesome.min.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/trait_list.css" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> @@ -81,7 +81,7 @@ <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/buttons/js/dataTables.buttons.min.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/buttons/js/buttons.html5.min.js') }}"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/plugins/sorting/natural.js') }}"></script> -<script language="javascript" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.1/js/all.min.js"></script> +<!-- <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='fontawesome/js/all.min.js') }}"></script> --> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/scroller/js/dataTables.scroller.min.js') }}"></script> <script type="text/javascript"> let correlationResults = {{correlation_results|safe}} diff --git a/gn2/wqflask/templates/tutorials.html b/gn2/wqflask/templates/tutorials.html index 74c84726..870dba1a 100644 --- a/gn2/wqflask/templates/tutorials.html +++ b/gn2/wqflask/templates/tutorials.html @@ -6,23 +6,27 @@ <title>GeneNetwork Webinar Series, Tutorials and Short Video Tours</title> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1"> -<!-- <link rel="stylesheet" href="uikit-3/css/uikit.min.css" />--> -<!-- <script src="uikit-3/js/uikit.min.js"></script>--> -<!-- <script src="uikit-3/js/uikit-icons.min.js"></script>--> +<!-- <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='uikit/css/uikit.min.css') }}"/> +--> +<!-- <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='uikit/js/uikit.min.js') }}"></script> +--> +<!-- <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='uikit/js/uikit-icons.min.js') }}"></script> +--> <!-- UIkit CSS --> - <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/uikit@3.5.4/dist/css/uikit.min.css" /> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='uikit/css/uikit.min.css') }}"/> + <!-- UIkit JS --> - <script src="https://cdn.jsdelivr.net/npm/uikit@3.5.4/dist/js/uikit.min.js"></script> - <script src="https://cdn.jsdelivr.net/npm/uikit@3.5.4/dist/js/uikit-icons.min.js"></script> + <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='uikit/js/uikit.min.js') }}"></script> + <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='uikit/js/uikit-icons.min.js') }}"></script> - <!-- DataTables--> - <!-- <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/v/dt/jq-3.3.1/dt-1.10.21/cr-1.5.2/datatables.min.css"/> --> - <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.22/css/jquery.dataTables.min.css"/> - <script type="text/javascript" src="https://cdn.datatables.net/v/dt/jq-3.3.1/dt-1.10.21/cr-1.5.2/datatables.min.js"></script> - <script type="text/javascript" src="https://code.jquery.com/jquery-3.5.1.js"></script> - <script type="text/javascript" src="https://cdn.datatables.net/1.10.22/js/jquery.dataTables.min.js"></script> + <!-- DataTables--> + <!-- <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTablesExtensions/buttonStyles/css/buttons.dataTables.min.css') }}" /> + --> + <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> + <script src="{{ url_for('js', filename='jquery/jquery.min.js') }}" type="text/javascript"></script> +<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.dataTables.min.js') }}"></script> </head> <body> diff --git a/gn2/wqflask/templates/view_case_attribute_diff.html b/gn2/wqflask/templates/view_case_attribute_diff.html index 0b5c95f1..3ba9b314 100644 --- a/gn2/wqflask/templates/view_case_attribute_diff.html +++ b/gn2/wqflask/templates/view_case_attribute_diff.html @@ -5,7 +5,7 @@ <link rel="stylesheet" type="text/css" href="/css/DataTables/css/jquery.dataTables.css" /> <link rel="stylesheet" type="text/css" - href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" /> + href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> <style> diff --git a/gn2/wqflask/templates/view_case_attribute_diff_error.html b/gn2/wqflask/templates/view_case_attribute_diff_error.html index a10f7ab9..5edbe070 100644 --- a/gn2/wqflask/templates/view_case_attribute_diff_error.html +++ b/gn2/wqflask/templates/view_case_attribute_diff_error.html @@ -5,7 +5,7 @@ <link rel="stylesheet" type="text/css" href="/css/DataTables/css/jquery.dataTables.css" /> <link rel="stylesheet" type="text/css" - href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" /> + href="{{ url_for('css', filename='jquery-ui/jquery-ui.theme.css') }}" /> <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> <style> diff --git a/gn2/wqflask/templates/wgcna_setup.html b/gn2/wqflask/templates/wgcna_setup.html index d7acd5f2..20316ab2 100644 --- a/gn2/wqflask/templates/wgcna_setup.html +++ b/gn2/wqflask/templates/wgcna_setup.html @@ -83,7 +83,6 @@ <script src="{{ url_for('js', filename='xterm/xterm.min.js') }}" type="text/javascript"></script> <script src="{{ url_for('js', filename='jquery/jquery.min.js') }}" type="text/javascript"></script> -<script src="https://cdn.jsdelivr.net/npm/xterm-addon-fit@0.5.0/lib/xterm-addon-fit.min.js"></script> <script> document.addEventListener('DOMContentLoaded', function() { |