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-rw-r--r--gn2/wqflask/templates/dataset.html191
-rw-r--r--gn2/wqflask/templates/metadata/dataset.html170
2 files changed, 167 insertions, 194 deletions
diff --git a/gn2/wqflask/templates/dataset.html b/gn2/wqflask/templates/dataset.html
index 2e22be17..eee38a18 100644
--- a/gn2/wqflask/templates/dataset.html
+++ b/gn2/wqflask/templates/dataset.html
@@ -73,35 +73,178 @@
{% if dataset %}
-{% include 'metadata/dataset.html' %}
-
-{% else %}
-<div class="container dataset-search">
- <p class="lead">We appreciate your interest, but unfortunately, we don't have any additional information available for: <strong>{{ name }}</strong>. If you have other inquiries or need assistance with something else, please don't hesitate to get in touch with us. <b><i>In the meantime you can explore other datasets here:</i></b></p>.
-
- <!-- Actual search box -->
- <div class="search">
- <form class="form-group has-feedback has-search"
- hx-post="/datasets/search"
- hx-target="#search-results">
- <span class="glyphicon glyphicon-search form-control-feedback"></span>
- <input class="form-control"
- type="search"
- name="search" placeholder="Start your dataset search here">
- </form>
+<header class="page-header text-justify">
+ <h1>
+ {% if dataset.title or dataset.label or dataset.altLabel %}
+ {{ dataset.title or dataset.label or dataset.altLabel }}
+ {% if dataset.title != dataset.altLabel and dataset.label != dataset.altLabel %}
+ <br/>
+ <small>({{ dataset.altLabel }})</small>
+ {% endif %}
+ {% else %}
+ {{ name }}
+ {% endif %}
+ </h1>
+</header>
+
+<div class="container dataset-content">
+ <div class="panel-about panel panel-info panel-metadata text-muted">
+ <div class="panel-heading">
+ <strong>
+ <span class="glyphicon glyphicon-info-sign aria-hidden=true"></span>
+ Details
+ </strong>
+ {% if dataset.accessionId %}
+ <small>
+ <a href="https://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{ dataset.accessionId.split('GN')[-1] }}" target="_blank">(GN1 Link)</a>
+ </small>
+ {% endif %}
+ </div>
+ <div class="panel-body">
+ <dl class="dl-horizontal">
+ {% if dataset.label != dataset.altLabel and dataset.label != dataset.title %}
+ <dt>Name</dt>
+ <dd> {{ dataset.label }} </dd>
+ {% endif %}
+ {% if dataset.created %}
+ <dt>Created</dt>
+ <dd>{{ dataset.created }}</dd>
+ {% endif %}
+ {% if dataset.inbredSet %}
+ <dt>Group</dt>
+ <dd>{{ dataset.inbredSet.label}}</dd>
+ {% endif %}
+
+ {% if dataset.accessionId %}
+ <dt>Accession Id</dt>
+ <dd>{{ dataset.accessionId}}</dd>
+ {% endif %}
+
+ {% if dataset.hasGeoSeriesId %}
+ <dt>GEO Series</dt>
+ <dd>
+ <a href="{{ dataset.geoSeriesId }}" target="_blank">{{ dataset.geoSeriesId.split("=")[-1] }}</a>
+ </dd>
+ {% endif %}
+
+ {% if dataset.tissue %}
+ <dt>Tissue</dt>
+ <dd>{{ dataset.tissue.label }}</dd>
+ {% endif %}
+
+ {% if dataset.platform %}
+ <dt>Platforms</dt>
+ <dd>
+ {{ dataset.platform.label }}
+ [<a href="{{ dataset.platform.id}}" target="_blank">
+ {{ dataset.platform.prefLabel}}
+ </a>]
+ </dd>
+ {% endif %}
+
+ {% if dataset.normalization %}
+ <dt>Normalization</dt>
+ <dd>{{ dataset.normalization.label }}</dd>
+ {% endif %}
+
+ {% if dataset.contactPoint %}
+ <dt>Investigator</dt>
+ <dd>
+ {% if dataset.contactPoint.contactWebUrl %}
+ <a href="{{ dataset.contactPoint.contactWebUrl }}" target="_blank">
+ {{ dataset.contactPoint.contactName }}
+ </a>
+ {% else %}
+ {{ dataset.contactPoint.contactName }}
+ {% endif %}
+ </dd>
+ {% endif %}
+
+ {% if dataset.organization %}
+ <dt>Organization</dt>
+ <dd>{{ dataset.organization }}</dd>
+ {% endif %}
+ </dl>
+ </div>
</div>
- <div id="search-results"></div>
-
+ <div id="dataset-description" class="container row dataset-metadata">
+ {% if dataset.description %}
+ <h3>
+ Description
+ <sup>
+ [&nbsp;
+ <a href="/metadata/edit?type=dcat:Dataset&section=description&name={{ dataset.label}}" target="_blank">edit</a>
+ &nbsp;]
+ </sup>
+ </h3>
+ <div>{{ dataset.description|safe }}</div>g
+ {% endif %}
+
+ {% if dataset.experimentType %}
+ <h3><strong>Experiment Type</strong></h3>
+ <div>{{ dataset.experimentType|safe }}</div>
+ {% endif %}
+
+ {% if dataset.specificity %}
+ <h2><strong>Specifics of this Dataset</strong></h2>
+ <div>{{ dataset.specificity }}</div>
+ {% endif %}
+
+ {% if dataset.experimentDesignInfo %}
+ <h3><strong>Experiment Design</strong></h3>
+ <div>{{ dataset.experimentDesignInfo|safe }}</div>
+ {% endif %}
+
+ {% if dataset.caseInfo %}
+ <h3><strong>About the Cases Used to Generate this Dataset:</strong></h3>
+ <div>{{ dataset.caseInfo|safe }}</div>
+ {% endif %}
+
+ {% if dataset.tissue and dataset.tissueInfo %}
+ <h3><strong>About the Tissue
+ {%if dataset.tissue and dataset.tissue.label %}({{ dataset.tissue.label }})
+ {% endif %}Used to Generate this Dataset</strong></h3>
+ <div>{{ dataset.tissueInfo|safe }}</div>
+ {% endif %}
+
+ {% if dataset.platform and dataset.platformInfo %}
+ <h3 title="{{ dataset.platform.label }}"><strong>About the Array Platform</strong></h3>
+ <div>{{ dataset.platformInfo|safe }}</div>
+ {% endif %}
+
+ {% if dataset.processingInfo %}
+ <h3><strong>About Data Values and Data Processing</strong></h3>
+ <div>{{ dataset.processingInfo|safe }}</div>
+ {% endif %}
+
+ {% if dataset.notes %}
+ <h3><strong>Notes</strong></h3>
+ <div>{{ dataset.notes|safe }}</div>
+ {% endif %}
+
+ {% if dataset.citation|trim %}
+ <h3><strong>Citation</strong></h3>
+ <div>{{ dataset.citation|safe}}</div>
+ {% endif %}
+
+ {% if dataset.acknowledgement|trim %}
+ <h3><strong>Acknowledgment</strong></h3>
+ <div>{{ dataset.acknowledgement|safe}}</div>
+ {% endif %}
+
+ {% if dataset.contributors %}
+ <h3><strong>Contributors</strong></h3>
+ <div>{{ dataset.contributors|safe }}</div>
+ {% endif %}
+ </div>
</div>
+{% else %}
+<div class="container dataset-search">
+ <p class="lead">We appreciate your interest, but unfortunately, we don't have any additional information available for: <strong>{{ name }}</strong>. If you have other inquiries or need assistance with something else, please don't hesitate to get in touch with us.
+</div>
{% endif %}
{% endblock %}
-
-{% block js %}
-<script language="javascript"
- type="text/javascript"
- src="{{ url_for('js', filename='htmx.min.js') }}"></script>
-{% endblock %}
diff --git a/gn2/wqflask/templates/metadata/dataset.html b/gn2/wqflask/templates/metadata/dataset.html
deleted file mode 100644
index 1946d01a..00000000
--- a/gn2/wqflask/templates/metadata/dataset.html
+++ /dev/null
@@ -1,170 +0,0 @@
-<header class="page-header text-justify">
- <h1>
- {% if dataset.title or dataset.label or dataset.altLabel %}
- {{ dataset.title or dataset.label or dataset.altLabel }}
- {% if dataset.title != dataset.altLabel and dataset.label != dataset.altLabel %}
- <br/>
- <small>({{ dataset.altLabel }})</small>
- {% endif %}
- {% else %}
- {{ name }}
- {% endif %}
- </h1>
-</header>
-
-<div class="container dataset-content">
- <div class="panel-about panel panel-info panel-metadata text-muted">
- <div class="panel-heading">
- <strong>
- <span class="glyphicon glyphicon-info-sign aria-hidden=true"></span>
- Details
- </strong>
- {% if dataset.accessionId %}
- <small>
- <a href="https://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{ dataset.accessionId.split('GN')[-1] }}" target="_blank">(GN1 Link)</a>
- </small>
- {% endif %}
- </div>
- <div class="panel-body">
- <dl class="dl-horizontal">
- {% if dataset.label != dataset.altLabel and dataset.label != dataset.title %}
- <dt>Name</dt>
- <dd> {{ dataset.label }} </dd>
- {% endif %}
- {% if dataset.created %}
- <dt>Created</dt>
- <dd>{{ dataset.created }}</dd>
- {% endif %}
- {% if dataset.inbredSet %}
- <dt>Group</dt>
- <dd>{{ dataset.inbredSet.label}}</dd>
- {% endif %}
-
- {% if dataset.accessionId %}
- <dt>Accession Id</dt>
- <dd>{{ dataset.accessionId}}</dd>
- {% endif %}
-
- {% if dataset.hasGeoSeriesId %}
- <dt>GEO Series</dt>
- <dd>
- <a href="{{ dataset.geoSeriesId }}" target="_blank">{{ dataset.geoSeriesId.split("=")[-1] }}</a>
- </dd>
- {% endif %}
-
- {% if dataset.tissue %}
- <dt>Tissue</dt>
- <dd>{{ dataset.tissue.label }}</dd>
- {% endif %}
-
- {% if dataset.platform %}
- <dt>Platforms</dt>
- <dd>
- {{ dataset.platform.label }}
- [<a href="{{ dataset.platform.id}}" target="_blank">
- {{ dataset.platform.prefLabel}}
- </a>]
- </dd>
- {% endif %}
-
- {% if dataset.normalization %}
- <dt>Normalization</dt>
- <dd>{{ dataset.normalization.label }}</dd>
- {% endif %}
-
- {% if dataset.contactPoint %}
- <dt>Investigator</dt>
- <dd>
- {% if dataset.contactPoint.contactWebUrl %}
- <a href="{{ dataset.contactPoint.contactWebUrl }}" target="_blank">
- {{ dataset.contactPoint.contactName }}
- </a>
- {% else %}
- {{ dataset.contactPoint.contactName }}
- {% endif %}
- </dd>
- {% endif %}
-
- {% if dataset.organization %}
- <dt>Organization</dt>
- <dd>{{ dataset.organization }}</dd>
- {% endif %}
- </dl>
- </div>
- </div>
-
- <div id="dataset-description" class="container row dataset-metadata">
- {% if dataset.description %}
- <h3>
- Description
- <sup>
- [&nbsp;
- <a href="/metadata/edit?type=dcat:Dataset&section=description&name={{ dataset.label}}" target="_blank">edit</a>
- &nbsp;]
- </sup>
- </h3>
- <div>{{ dataset.description|safe }}</div>g
- {% endif %}
-
- {% if dataset.experimentType %}
- <h3><strong>Experiment Type</strong></h3>
- <div>{{ dataset.experimentType|safe }}</div>
- {% endif %}
-
- {% if dataset.specificity %}
- <h2><strong>Specifics of this Dataset</strong></h2>
- <div>{{ dataset.specificity }}</div>
- {% endif %}
-
- {% if dataset.experimentDesignInfo %}
- <h3><strong>Experiment Design</strong></h3>
- <div>{{ dataset.experimentDesignInfo|safe }}</div>
- {% endif %}
-
- {% if dataset.caseInfo %}
- <h3><strong>About the Cases Used to Generate this Dataset:</strong></h3>
- <div>{{ dataset.caseInfo|safe }}</div>
- {% endif %}
-
- {% if dataset.tissue and dataset.tissueInfo %}
- <h3><strong>About the Tissue
- {%if dataset.tissue and dataset.tissue.label %}({{ dataset.tissue.label }})
- {% endif %}Used to Generate this Dataset</strong></h3>
- <div>{{ dataset.tissueInfo|safe }}</div>
- {% endif %}
-
- {% if dataset.platform and dataset.platformInfo %}
- <h3 title="{{ dataset.platform.label }}"><strong>About the Array Platform</strong></h3>
- <div>{{ dataset.platformInfo|safe }}</div>
- {% endif %}
-
- {% if dataset.processingInfo %}
- <h3><strong>About Data Values and Data Processing</strong></h3>
- <div>{{ dataset.processingInfo|safe }}</div>
- {% endif %}
-
- {% if dataset.notes %}
- <h3><strong>Notes</strong></h3>
- <div>{{ dataset.notes|safe }}</div>
- {% endif %}
-
- {% if dataset.citation|trim %}
- <h3><strong>Citation</strong></h3>
- <div>{{ dataset.citation|safe}}</div>
- {% endif %}
-
- {% if dataset.acknowledgement|trim %}
- <h3><strong>Acknowledgment</strong></h3>
- <div>{{ dataset.acknowledgement|safe}}</div>
- {% endif %}
-
- {% if dataset.contributors %}
- <h3><strong>Contributors</strong></h3>
- <div>{{ dataset.contributors|safe }}</div>
- {% endif %}
- </div>
-
-</div>
-
-</div>
-
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-26 12:30:42 +0000