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-rw-r--r--gn2/wqflask/search_results.py175
1 files changed, 91 insertions, 84 deletions
diff --git a/gn2/wqflask/search_results.py b/gn2/wqflask/search_results.py
index 057ee1ff..72baa6e9 100644
--- a/gn2/wqflask/search_results.py
+++ b/gn2/wqflask/search_results.py
@@ -282,91 +282,11 @@ class SearchResultPage:
if all([(the_term['key'] in xapian_terms) or (not the_term['key'] and self.dataset.type != "Publish") for the_term in self.search_terms]):
self.search_type = "xapian"
self.results = requests.get(generate_xapian_request(self.dataset, self.search_terms, self.and_or)).json()
+ if not len(self.results) or 'error' in self.results:
+ self.results = []
+ self.sql_search()
else:
- self.search_type = "sql"
- combined_from_clause = ""
- combined_where_clause = ""
- # The same table can't be referenced twice in the from clause
- previous_from_clauses = []
-
- for i, a_search in enumerate(self.search_terms):
- if a_search['key'] == "GO":
- self.go_term = a_search['search_term'][0]
- gene_list = get_GO_symbols(a_search)
- self.search_terms += gene_list
- continue
- else:
- the_search = self.get_search_ob(a_search)
- if the_search != None:
- if a_search['key'] == None and self.dataset.type == "ProbeSet":
- alias_terms = get_alias_terms(a_search['search_term'][0], self.dataset.group.species)
- alias_where_clauses = []
- for alias_search in alias_terms:
- alias_search_ob = self.get_search_ob(alias_search)
- if alias_search_ob != None:
- get_from_clause = getattr(
- alias_search_ob, "get_from_clause", None)
- if callable(get_from_clause):
- from_clause = alias_search_ob.get_from_clause()
- if from_clause in previous_from_clauses:
- pass
- else:
- previous_from_clauses.append(from_clause)
- combined_from_clause += from_clause
- where_clause = alias_search_ob.get_alias_where_clause()
- alias_where_clauses.append(where_clause)
-
- get_from_clause = getattr(
- the_search, "get_from_clause", None)
- if callable(get_from_clause):
- from_clause = the_search.get_from_clause()
- if from_clause in previous_from_clauses:
- pass
- else:
- previous_from_clauses.append(from_clause)
- combined_from_clause += from_clause
-
- where_clause = the_search.get_where_clause()
- alias_where_clauses.append(where_clause)
-
- combined_where_clause += "(" + " OR ".join(alias_where_clauses) + ")"
- if (i + 1) < len(self.search_terms):
- if self.and_or == "and":
- combined_where_clause += "AND"
- else:
- combined_where_clause += "OR"
- else:
- get_from_clause = getattr(
- the_search, "get_from_clause", None)
- if callable(get_from_clause):
- from_clause = the_search.get_from_clause()
- if from_clause in previous_from_clauses:
- pass
- else:
- previous_from_clauses.append(from_clause)
- combined_from_clause += from_clause
-
- where_clause = the_search.get_where_clause()
- combined_where_clause += "(" + where_clause + ")"
- if (i + 1) < len(self.search_terms):
- if self.and_or == "and":
- combined_where_clause += "AND"
- else:
- combined_where_clause += "OR"
- else:
- self.search_term_exists = False
-
- if self.search_term_exists:
- combined_where_clause = "(" + combined_where_clause + ")"
- final_query = the_search.compile_final_query(
- combined_from_clause, combined_where_clause)
-
- results = the_search.execute(final_query)
- self.results.extend(results)
-
- if self.search_term_exists:
- if the_search != None:
- self.header_fields = the_search.header_fields
+ self.sql_search()
def get_search_ob(self, a_search):
search_term = a_search['search_term']
@@ -390,6 +310,93 @@ class SearchResultPage:
else:
return None
+ def sql_search(self):
+ self.search_type = "sql"
+ combined_from_clause = ""
+ combined_where_clause = ""
+ # The same table can't be referenced twice in the from clause
+ previous_from_clauses = []
+
+ for i, a_search in enumerate(self.search_terms):
+ if a_search['key'] == "GO":
+ self.go_term = a_search['search_term'][0]
+ gene_list = get_GO_symbols(a_search)
+ self.search_terms += gene_list
+ continue
+ else:
+ the_search = self.get_search_ob(a_search)
+ if the_search != None:
+ if a_search['key'] == None and self.dataset.type == "ProbeSet":
+ alias_terms = get_alias_terms(a_search['search_term'][0], self.dataset.group.species)
+ alias_where_clauses = []
+ for alias_search in alias_terms:
+ alias_search_ob = self.get_search_ob(alias_search)
+ if alias_search_ob != None:
+ get_from_clause = getattr(
+ alias_search_ob, "get_from_clause", None)
+ if callable(get_from_clause):
+ from_clause = alias_search_ob.get_from_clause()
+ if from_clause in previous_from_clauses:
+ pass
+ else:
+ previous_from_clauses.append(from_clause)
+ combined_from_clause += from_clause
+ where_clause = alias_search_ob.get_alias_where_clause()
+ alias_where_clauses.append(where_clause)
+
+ get_from_clause = getattr(
+ the_search, "get_from_clause", None)
+ if callable(get_from_clause):
+ from_clause = the_search.get_from_clause()
+ if from_clause in previous_from_clauses:
+ pass
+ else:
+ previous_from_clauses.append(from_clause)
+ combined_from_clause += from_clause
+
+ where_clause = the_search.get_where_clause()
+ alias_where_clauses.append(where_clause)
+
+ combined_where_clause += "(" + " OR ".join(alias_where_clauses) + ")"
+ if (i + 1) < len(self.search_terms):
+ if self.and_or == "and":
+ combined_where_clause += "AND"
+ else:
+ combined_where_clause += "OR"
+ else:
+ get_from_clause = getattr(
+ the_search, "get_from_clause", None)
+ if callable(get_from_clause):
+ from_clause = the_search.get_from_clause()
+ if from_clause in previous_from_clauses:
+ pass
+ else:
+ previous_from_clauses.append(from_clause)
+ combined_from_clause += from_clause
+
+ where_clause = the_search.get_where_clause()
+ combined_where_clause += "(" + where_clause + ")"
+ if (i + 1) < len(self.search_terms):
+ if self.and_or == "and":
+ combined_where_clause += "AND"
+ else:
+ combined_where_clause += "OR"
+ else:
+ self.search_term_exists = False
+
+ if self.search_term_exists:
+ combined_where_clause = "(" + combined_where_clause + ")"
+ final_query = the_search.compile_final_query(
+ combined_from_clause, combined_where_clause)
+
+ results = the_search.execute(final_query)
+ self.results.extend(results)
+
+ if self.search_term_exists:
+ if the_search != None:
+ self.header_fields = the_search.header_fields
+
+
def trait_info_str(trait, dataset_type):
"""Provide a string representation for given trait"""
def __trait_desc(trt):