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-rw-r--r--gn2/wqflask/edit.py46
1 files changed, 34 insertions, 12 deletions
diff --git a/gn2/wqflask/edit.py b/gn2/wqflask/edit.py
index 7abba0b5..3b28482e 100644
--- a/gn2/wqflask/edit.py
+++ b/gn2/wqflask/edit.py
@@ -3,6 +3,7 @@ import subprocess
from urllib.parse import urljoin
from pathlib import Path
+from gn2.wqflask.oauth2.session import session_info
from pymonad.tools import curry
from pymonad.either import Either, Left
@@ -21,7 +22,7 @@ metadata = Blueprint("metadata", __name__)
def save_dataset_metadata(
git_dir: str, output: str,
- content: str, msg: str
+ author: str, content: str, msg: str
) -> Either:
"""Save dataset metadata to git"""
@curry(2)
@@ -36,15 +37,17 @@ def save_dataset_metadata(
})
return 0
- with Path(output) as _f:
- _f.write(content)
+ (Either.insert(0)
+ .then(__run_cmd(f"git -C {git_dir} reset --hard origin".split(" ")))
+ .then(__run_cmd(f"git -C {git_dir} pull".split(" "))))
+ with Path(output).open(mode="w") as _f:
+ _f.write(content)
return (
Either.insert(0)
- .then(__run_cmd(f"git -C {git_dir} pull"))
- .then(__run_cmd(f"git -C {git_dir} add ."))
- .then(__run_cmd(f"git -C {git_dir} commit --all --message {msg}"))
- .then(__run_cmd(f"git -C {git_dir} push origin master --dry-run"))
+ .then(__run_cmd(f"git -C {git_dir} add .".split(" ")))
+ .then(__run_cmd(f"git -C {git_dir} commit -m".split(" ") + [f'{msg}', f"--author='{author}'", "--no-gpg-sign"]))
+ .then(__run_cmd(f"git -C {git_dir} push origin master --dry-run".split(" ")))
)
@@ -55,7 +58,7 @@ def metadata_edit():
__name = request.args.get("name")
match request.args.get("type"):
case "dcat:Dataset":
- metadata = requests.get(
+ __metadata = requests.get(
urljoin(
GN3_LOCAL_URL,
f"api/metadata/datasets/{ __name }"
@@ -65,9 +68,9 @@ def metadata_edit():
return render_template(
"metadata/editor.html",
name=__name,
- metadata=metadata,
+ metadata=__metadata,
section=__section,
- edit=metadata.get(__section),
+ edit=__metadata.get(__section),
)
@@ -79,16 +82,35 @@ def save():
get_setting("DATA_DIR"),
"gn-docs"
)
+ __map = {
+ "description": "summary.rtf",
+ "tissueInfo": "tissue.rtf",
+ "specifics": "specifics.rtf",
+ "caseInfo": "cases.rtf",
+ "platformInfo": "platform.rtf",
+ "processingInfo": "processing.rtf",
+ "notes": "notes.rtf",
+ "experimentDesignInfo": "experiment-design.rtf",
+ "acknowledgement": "acknowledgement.rtf",
+ "citation": "citation.rtf",
+ "experimentType": "experiment-type.rtf",
+ "contributors": "contributors.rtf"
+ }
__output = Path(
__gn_docs,
"general/datasets/",
- request.form.get("id").split("/")[-1]
+ request.form.get("id").split("/")[-1],
+ f"{__map.get(request.form.get('section'))}"
)
+ __result = {}
match request.form.get("type"):
case "dcat:Dataset":
- save_dataset_metadata(
+ __session = session_info()["user"]
+ __author = f"{__session['name']} <{__session['email']}>"
+ __result = save_dataset_metadata(
git_dir=__gn_docs,
output=__output,
+ author=__author,
content=request.form.get("editor"),
msg=request.form.get("edit-summary")
).either(