diff options
Diffstat (limited to 'etc')
| -rw-r--r-- | etc/default_settings.py | 19 |
1 files changed, 13 insertions, 6 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index 6acea637..08eae024 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -2,18 +2,22 @@ # webserver running in developer mode with limited console # output. Copy this file and run it from ./bin/genenetwork2 configfile # -# Note that these settings are fetched in ./wqflask/utilities/tools.py +# Note: these settings are fetched in ./wqflask/utilities/tools.py # which has support for overriding them through environment variables, # e.g. # # env LOG_SQL=True USE_REDIS=False ./bin/genenetwork2 # env LOG_LEVEL=DEBUG ./bin/genenetwork2 ~/gn2_settings.py # -# Note also that in the near future we will additionally fetch +# Note: in the near future we will additionally fetch # settings from a JSON file # -# Note that values for False and 0 have to be strings here - otherwise +# Note: values for False and 0 have to be strings here - otherwise # Flask won't pick them up +# +# For GNU Guix deployment also check the paths in +# +# ~/.guix-profile/lib/python2.7/site-packages/genenetwork2-2.0-py2.7.egg/etc/default_settings.py import os import sys @@ -22,7 +26,7 @@ GN_VERSION = open("../VERSION","r").read() SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" SQLALCHEMY_DATABASE_URI = 'mysql://gn2:mysql_password@localhost/db_webqtl_s' SQLALCHEMY_POOL_RECYCLE = 3600 -GN_SERVER_URL = "http://localhost:8880/" +GN_SERVER_URL = "http://test-gn2.genenetwork.org/" # ---- Flask configuration (see website) TRAP_BAD_REQUEST_ERRORS = True @@ -33,7 +37,7 @@ SECURITY_RECOVERABLE = True SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org" SECURITY_POST_LOGIN_VIEW = "/thank_you" -SERVER_PORT = 5003 +SERVER_PORT = 5003 # running on localhost SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc' # ---- Behavioural settings (defaults) note that logger and log levels can @@ -41,6 +45,7 @@ SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a WEBSERVER_MODE = 'DEV' # Python webserver mode (DEBUG|DEV|PROD) WEBSERVER_BRANDING = None # Set the branding (nyi) WEBSERVER_DEPLOY = None # Deployment specifics (nyi) +WEBSERVER_URL = "http://localhost:"+str(SERVER_PORT)+"/" # external URL LOG_LEVEL = 'WARNING' # Logger mode (DEBUG|INFO|WARNING|ERROR|CRITICAL) LOG_LEVEL_DEBUG = '0' # logger.debugf log level (0-5, 5 = show all) @@ -53,7 +58,8 @@ USE_GN_SERVER = 'False' # Use GN_SERVER SQL calls # Paths to JS libraries -TWITTER_POST_FETCHER_JS_PATH = os.environ['HOME']+"/genenetwork/Twitter-Post-Fetcher" +JS_BIODALLIANCE = os.environ['HOME']+"/genenetwork/biodalliance" +JS_TWITTER_POST_FETCHER = os.environ['HOME']+"/genenetwork/Twitter-Post-Fetcher" # ---- Path overrides for Genenetwork # TMPDIR is normally picked up from the environment @@ -63,6 +69,7 @@ GENENETWORK_FILES = HOME+"/gn2_data" # base dir for all static data files LOCAL_PRIVATE_FILES = HOME+"/gn2_private_data" # private static data files # ---- GN2 Executables +# Paths to invoked binaries PYLMM_COMMAND = str.strip(os.popen("which pylmm_redis").read()) PLINK_COMMAND = str.strip(os.popen("which plink2").read()) GEMMA_COMMAND = str.strip(os.popen("which gemma").read()) |