diff options
Diffstat (limited to 'etc')
| -rw-r--r-- | etc/default_settings.py | 26 |
1 files changed, 12 insertions, 14 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index aa4e8d83..28547212 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -14,7 +14,9 @@ # Note: values for False and 0 have to be strings here - otherwise # Flask won't pick them up # -# Final note: see below information to pick up the GNU Guix paths +# For GNU Guix deployment also check the paths in +# +# ~/.guix-profile/lib/python2.7/site-packages/genenetwork2-2.0-py2.7.egg/etc/default_settings.py import os import sys @@ -24,7 +26,7 @@ SQLALCHEMY_DATABASE_URI = 'mysql://gn2:mysql_password@localhost/db_webqtl_s' SQLALCHEMY_POOL_RECYCLE = 3600 GN_SERVER_URL = "http://localhost:8880/" -# Flask configuration (see website) +# ---- Flask configuration (see website) TRAP_BAD_REQUEST_ERRORS = True SECURITY_CONFIRMABLE = True SECURITY_TRACKABLE = True @@ -36,8 +38,8 @@ SECURITY_POST_LOGIN_VIEW = "/thank_you" SERVER_PORT = 5003 SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc' -# Behavioural settings (defaults) note that logger and log levels can -# be overridden at the module level and with enviroment settings +# ---- Behavioural settings (defaults) note that logger and log levels can +# be overridden at the module level and with enviroment settings WEBSERVER_MODE = 'DEV' # Python webserver mode (DEBUG|DEV|PROD) WEBSERVER_BRANDING = None # Set the branding (nyi) WEBSERVER_DEPLOY = None # Deployment specifics (nyi) @@ -51,22 +53,18 @@ LOG_BENCH = True # Log bench marks USE_REDIS = True # REDIS caching (note that redis will be phased out) USE_GN_SERVER = 'False' # Use GN_SERVER SQL calls -# For GNU Guix deployment also check the paths in -# -# ~/.guix-profile/lib/python2.7/site-packages/genenetwork2-2.0-py2.7.egg/etc/default_settings.py +# Paths to JS libraries -# General paths for Genenetwork +BIODALLIANCE_JS = os.environ['HOME']+"/genenetwork/biodalliance" +# ---- Path overrides for Genenetwork +# TMPDIR is normally picked up from the environment HOME=os.environ['HOME'] LOGFILE = HOME+"/genenetwork2.log" -GENENETWORK_FILES = HOME+"/gn2_data" - -# Paths to JS libraries - -BIODALLIANCE_JS = os.environ['HOME']+"/genenetwork/biodalliance" +GENENETWORK_FILES = HOME+"/gn2_data" # base dir for all static data files +# ---- GN2 Executables # Paths to invoked binaries - PYLMM_COMMAND = str.strip(os.popen("which pylmm_redis").read()) PLINK_COMMAND = str.strip(os.popen("which plink2").read()) GEMMA_COMMAND = str.strip(os.popen("which gemma").read()) |