diff options
Diffstat (limited to 'etc')
| -rw-r--r-- | etc/default_settings.py | 15 |
1 files changed, 8 insertions, 7 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index 929bd687..48d3f66b 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -1,13 +1,14 @@ import os +import sys -LOGFILE = "/var/log/genenetwork/wqflask.log" +LOGFILE = "/tmp/genenetwork2.log" # This is needed because Flask turns key errors into a # 400 bad request response with no exception/log TRAP_BAD_REQUEST_ERRORS = True -DB_URI = "mysql://gn2:default@localhost/db_webqtl" -SQLALCHEMY_DATABASE_URI = 'mysql://gn2:default@localhost/db_webqtl' +DB_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" +SQLALCHEMY_DATABASE_URI = 'mysql://gn2:mysql_password@localhost/db_webqtl_s' # http://pythonhosted.org/Flask-Security/configuration.html SECURITY_CONFIRMABLE = True @@ -22,7 +23,7 @@ SERVER_PORT = 5003 SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc' # Path overrides for Genenetwork -HOME=os.environ.get('HOME') -PYLMM_PATH = HOME+"/izip/git/opensource/python/pylmm_gn2/" -PLINK_PATH = HOME+"/.guix-profile/bin" -GEMMA_PATH = HOME+"/.guix-profile/bin" +GENENETWORK_FILES = "../../gn2_data" +PYLMM_RUN = os.popen("which pylmm_redis").read() +PLINK_RUN = os.popen("which plink2").read() +GEMMA_RUN = os.popen("which gemma").read() |