diff options
Diffstat (limited to 'etc')
| -rw-r--r-- | etc/default_settings.py | 49 |
1 files changed, 39 insertions, 10 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index 0cf40265..df734f7c 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -1,29 +1,58 @@ +# Default settings file defines a single Flask process for the Python +# webserver running in developer mode with limited console +# output. Copy this file and run it from ./bin/genenetwork2 configfile +# +# Note that these settings are fetched in ./wqflask/utilities/tools.py +# which has support for overriding them through environment variables, +# e.g. +# +# env LOG_SQL=True USE_REDIS=False ./bin/genenetwork2 +# +# Note also that in the near future we will additionally fetch +# settings from a JSON file +# +# Note that values for False and 0 have to be strings here - otherwise +# Flask won't pick them up + import os import sys -LOGFILE = "/tmp/genenetwork2.log" - -# This is needed because Flask turns key errors into a -# 400 bad request response with no exception/log -TRAP_BAD_REQUEST_ERRORS = True - -DB_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" +SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" SQLALCHEMY_DATABASE_URI = 'mysql://gn2:mysql_password@localhost/db_webqtl_s' +SQLALCHEMY_POOL_RECYCLE = 3600 +GN_SERVER_URL = "http://localhost:8880/" -# http://pythonhosted.org/Flask-Security/configuration.html +# Flask configuration (see website) +TRAP_BAD_REQUEST_ERRORS = True SECURITY_CONFIRMABLE = True SECURITY_TRACKABLE = True SECURITY_REGISTERABLE = True SECURITY_RECOVERABLE = True SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org" SECURITY_POST_LOGIN_VIEW = "/thank_you" -SQLALCHEMY_POOL_RECYCLE = 3600 SERVER_PORT = 5003 SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc' +# Behavioural settings (defaults) note that logger and log levels can +# be overridden at the module level and with enviroment settings +WEBSERVER_MODE = 'DEV' # Python webserver mode (DEBUG|DEV|PROD) +WEBSERVER_BRANDING = None # Set the branding (nyi) +WEBSERVER_DEPLOY = None # Deployment specifics (nyi) + +LOG_LEVEL = 'WARNING' # Logger mode (DEBUG|INFO|WARNING|ERROR|CRITICAL) +LOG_LEVEL_DEBUG = '0' # Debug log level (0-5, 0 = show all) +LOG_SQL = 'False' # Log SQL/backend and GN_SERVER calls +LOG_SQLALCHEMY = 'False' +LOG_BENCH = True # Log bench marks + +USE_REDIS = True # REDIS caching (note that redis will be phased out) +USE_GN_SERVER = 'False' # Use GN_SERVER SQL calls + # Path overrides for Genenetwork -GENENETWORK_FILES = os.environ['HOME']+"/gn2_data" +HOME=os.environ['HOME'] +LOGFILE = HOME+"/genenetwork2.log" +GENENETWORK_FILES = HOME+"/gn2_data" PYLMM_COMMAND = str.strip(os.popen("which pylmm_redis").read()) PLINK_COMMAND = str.strip(os.popen("which plink2").read()) GEMMA_COMMAND = str.strip(os.popen("which gemma").read()) |