diff options
Diffstat (limited to 'etc/default_settings.py')
| -rw-r--r-- | etc/default_settings.py | 16 |
1 files changed, 13 insertions, 3 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index d8e57f38..e03e2781 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -2,18 +2,22 @@ # webserver running in developer mode with limited console # output. Copy this file and run it from ./bin/genenetwork2 configfile # -# Note that these settings are fetched in ./wqflask/utilities/tools.py +# Note: these settings are fetched in ./wqflask/utilities/tools.py # which has support for overriding them through environment variables, # e.g. # # env LOG_SQL=True USE_REDIS=False ./bin/genenetwork2 # env LOG_LEVEL=DEBUG ./bin/genenetwork2 ~/gn2_settings.py # -# Note also that in the near future we will additionally fetch +# Note: in the near future we will additionally fetch # settings from a JSON file # -# Note that values for False and 0 have to be strings here - otherwise +# Note: values for False and 0 have to be strings here - otherwise # Flask won't pick them up +# +# For GNU Guix deployment also check the paths in +# +# ~/.guix-profile/lib/python2.7/site-packages/genenetwork2-2.0-py2.7.egg/etc/default_settings.py import os import sys @@ -50,6 +54,10 @@ LOG_BENCH = True # Log bench marks USE_REDIS = True # REDIS caching (note that redis will be phased out) USE_GN_SERVER = 'False' # Use GN_SERVER SQL calls +# Paths to JS libraries + +BIODALLIANCE_JS = os.environ['HOME']+"/genenetwork/biodalliance" + # ---- Path overrides for Genenetwork # TMPDIR is normally picked up from the environment HOME=os.environ['HOME'] @@ -58,6 +66,8 @@ GENENETWORK_FILES = HOME+"/gn2_data" # base dir for all static data files LOCAL_PRIVATE_FILES = HOME+"/gn2_private_data" # private static data files # ---- GN2 Executables +# Paths to invoked binaries PYLMM_COMMAND = str.strip(os.popen("which pylmm_redis").read()) PLINK_COMMAND = str.strip(os.popen("which plink2").read()) GEMMA_COMMAND = str.strip(os.popen("which gemma").read()) + |