diff options
Diffstat (limited to 'etc/default_settings.py')
| -rw-r--r-- | etc/default_settings.py | 18 |
1 files changed, 8 insertions, 10 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py index 85eab2c6..64a78686 100644 --- a/etc/default_settings.py +++ b/etc/default_settings.py @@ -31,11 +31,9 @@ GN_SERVER_URL = "http://localhost:8880/" # REST API server SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" SQL_ALCHEMY_POOL_RECYCLE = 3600 - -# ---- Elastic search - -ELASTICSEARCH_HOST = "localhost" -ELASTICSEARCH_PORT = 9200 +GN_SERVER_URL = "http://localhost:8880/" # REST API server +GN2_BASE_URL = "http://genenetwork.org/" +GN2_BRANCH_URL = GN2_BASE_URL # ---- Flask configuration (see website) TRAP_BAD_REQUEST_ERRORS = True @@ -51,13 +49,13 @@ SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a GITHUB_CLIENT_ID = "UNKNOWN" GITHUB_CLIENT_SECRET = "UNKNOWN" -GITHUB_AUTH_URL = "UNKNOWN" -GITHUB_API_URL = "UNKNOWN" +GITHUB_AUTH_URL = "https://github.com/login/oauth/authorize" +GITHUB_API_URL = "https://api.github.com/user" ORCID_CLIENT_ID = "UNKNOWN" ORCID_CLIENT_SECRET = "UNKNOWN" -ORCID_AUTH_URL = "UNKNOWN" -ORCID_TOKEN_URL = "UNKNOWN" +ORCID_AUTH_URL = "https://orcid.org/oauth/authorize" +ORCID_TOKEN_URL = "https://orcid.org/oauth/token" ELASTICSEARCH_HOST = "localhost" ELASTICSEARCH_PORT = '9200' @@ -97,7 +95,7 @@ GENENETWORK_FILES = HOME+"/genotype_files" # base dir for all static data fil JS_GN_PATH = os.environ['HOME']+"/genenetwork/javascript" # ---- GN2 Executables (overwrite for testing only) -# PYLMM_COMMAND = str.strip(os.popen("which pylmm_redis").read()) # PLINK_COMMAND = str.strip(os.popen("which plink2").read()) # GEMMA_COMMAND = str.strip(os.popen("which gemma").read()) +REAPER_COMMAND = os.environ['GN2_PROFILE'] + "/bin/qtlreaper" # GEMMA_WRAPPER_COMMAND = str.strip(os.popen("which gemma-wrapper").read()) |