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Diffstat (limited to 'doc')
| -rw-r--r-- | doc/README.org | 16 |
1 files changed, 5 insertions, 11 deletions
diff --git a/doc/README.org b/doc/README.org index e1c6b614..d4dc1027 100644 --- a/doc/README.org +++ b/doc/README.org @@ -62,21 +62,16 @@ may support * Creating a GNU Guix profile -We run a GNU Guix channel with packages at [[https://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics][guix-bioinformatics]]. The -README has instructions for hosting a channel, but typically we use -the GUIX_PACKAGE_PATH instead. First upgrade to a recent guix with +We run a GNU Guix channel with packages at [[https://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics][guix-bioinformatics]]. The README has instructions for hosting a channel, but typically we use the GUIX_PACKAGE_PATH instead. First upgrade to a recent guix with : mkdir ~/opt : guix pull -p ~/opt/guix-pull -It should upgrade (ignore the locales warnings). You can optionally -specify the specific git checkout of guix with +It should upgrade (ignore the locales warnings). You can optionally specify the specific git checkout of guix with : guix pull -p ~/opt/guix-pull --commit=f04883d -which is useful when you ned to roll back to an earlier version -(sometimes our channel goes out of sync). Next, we install -GeneNetwork2 with +which is useful when you need to roll back to an earlier version (sometimes our channel goes out of sync). Next, we install GeneNetwork2 with : source ~/opt/guix-pull/etc/profile : git clone https://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics.git ~/guix-bioinformatics @@ -264,10 +259,9 @@ cd $HOME/genotype_files * GN2 Dependency Graph -Graph of all runtime dependencies as installed by GNU Guix. +List of all runtime dependencies for GN2 as installed by GNU Guix. -#+ATTR_HTML: :title GN2_graph -http://biogems.info/contrib/genenetwork/gn2.svg +https://genenetwork.org/environments/ * Working with the GN2 source code |