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Diffstat (limited to 'doc')
| -rw-r--r-- | doc/README.org | 25 |
1 files changed, 24 insertions, 1 deletions
diff --git a/doc/README.org b/doc/README.org index efaec8a6..85c6da1c 100644 --- a/doc/README.org +++ b/doc/README.org @@ -9,6 +9,7 @@ - [[#install-gn2][Install GN2]] - [[#run-gn2][Run GN2]] - [[#run-mysql-server][Run MySQL server]] + - [[#run-your-own-copy-of-gn2][Run your own copy of GN2]] - [[#source-deployment-and-other-information-on-reproducibility][Source deployment and other information on reproducibility]] * Introduction @@ -68,7 +69,8 @@ export PATH=~/.guix-profile/bin:$PATH genenetwork2 #+end_src bash -will start the default server which listens on port 5003. +will start the default server which listens on port 5003, i.e., +http://localhost:5003/. ** Run MySQL server @@ -105,6 +107,27 @@ Set permissions and match password in your settings file below: : mysql> grant all privileges on db_webqtl_s.* to gn2@"localhost" identified by 'mysql_password'; +** Run your own copy of GN2 + +At some point you may want to fix the source code. Clone the GN2 +repository from https://github.com/genenetwork/genenetwork2_diet + +Inside the repository: + +: cd genenetwork2_diet +: ./bin/genenetwork2 + +Will fire up your local repo http://localhost:5003/ using the +settings in ./etc/default_settings.py + +To override settings create your own from a copy of +default_settings.py and pass it into GN2 with + +: ./bin/genenetwork2 $HOME/my_settings.py + +and everything *should* work. This way we develop against +the exact same dependency graph of software. + * Source deployment and other information on reproducibility |