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Diffstat (limited to 'doc')
| -rw-r--r-- | doc/GUIX-Reproducible-from-source.org | 35 | ||||
| -rw-r--r-- | doc/README.org | 28 |
2 files changed, 63 insertions, 0 deletions
diff --git a/doc/GUIX-Reproducible-from-source.org b/doc/GUIX-Reproducible-from-source.org new file mode 100644 index 00000000..b88eb9e8 --- /dev/null +++ b/doc/GUIX-Reproducible-from-source.org @@ -0,0 +1,35 @@ +#+TITLE: Installing GeneNetwork services with GNU Guix + +* Table of Contents :TOC: + - [[#introduction][Introduction]] + - [[#binary-deployment][Binary deployment]] + - [[#from-source-deployment][From source deployment]] + +* Introduction + +Large system deployments tend to get very complex. In this document we +explain the GeneNetwork deployment system which is based on GNU Guix +(see Pjotr's [[https://github.com/pjotrp/guix-notes/blob/master/README.md][Guix-notes]]). + +* Binary deployment + +NYA (will go to README) + +* From source deployment + +GNU Guix allows for [[https://github.com/pjotrp/guix-notes/blob/master/REPRODUCIBLE.org][reproducible deployment]] based on a checked out +Guix repository - use gn-stable for that: + +#+begin_src sh :lang bash +mkdir genenetwork +cd genenetwork +git checkout https://github.com/genenetwork/guix.git gn-stable-guix +git checkout https://github.com/genenetwork/guix-bioinformatics.git +#+end_src + +Next build guix (and run) following the instructions in [[https://github.com/pjotrp/guix-notes/blob/master/INSTALL.org#building-gnu-guix-from-source-using-guix][guix-notes]]. + +Once that is done we can add the guix-bioinformatics path with + +: env GUIX_PACKAGE_PATH=../guix-bioinformatics ./pre-inst-env guix package -A slurm + diff --git a/doc/README.org b/doc/README.org new file mode 100644 index 00000000..f6ab6a52 --- /dev/null +++ b/doc/README.org @@ -0,0 +1,28 @@ +#+TITLE: Installing GeneNetwork services with GNU Guix + +* Table of Contents :TOC: + - [[#introduction][Introduction]] + - [[#binary-deployment][Binary deployment]] + - [[#from-source-deployment][From source deployment]] + +* Introduction + +Large system deployments tend to get very complex. In this document we +explain the GeneNetwork deployment system which is based on GNU Guix +(see Pjotr's [[https://github.com/pjotrp/guix-notes/blob/master/README.md][Guix-notes]]). + +* Binary deployment + +NYA + +* From source deployment + +GNU Guix allows for [[https://github.com/pjotrp/guix-notes/blob/master/REPRODUCIBLE.org][reproducible deployment]] based on a checked out +Guix repository - use gn-stable for that: + +#+begin_src sh :lang bash +mkdir genenetwork +cd genenetwork +git checkout https://github.com/genenetwork/guix.git gn-stable-guix +git checkout https://github.com/genenetwork/guix-bioinformatics.git +#+end_src |