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Diffstat (limited to 'doc/development.org')
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diff --git a/doc/development.org b/doc/development.org new file mode 100644 index 00000000..bbb6084f --- /dev/null +++ b/doc/development.org @@ -0,0 +1,23 @@ +* Development + +After cloning the git source tree you can run the contained GN2 using +an existing GN2_PROFILE, i.e., use a profile that was create to run a +binary installation of GN2. This profile may be found by typing + +: which genenetwork2 +: /home/wrk/opt/gn-latest-guix/bin/genenetwork2 + +An example of running the development version would be + +: env GN2_PROFILE=/home/wrk/opt/gn-latest-guix ./bin/genenetwork2 + +Profiles are stored in /gnu/store, so you may pick one up there + +: readlink -f $(dirname $(dirname `which genenetwork2`)) +: /gnu/store/dvckpaw770b00l6rv4ijql8wrk11iypv-profile + +and use that instead. + +Note that the genenetwork2 script sets up the environment for running +the webserver. This includes path to R modules and python modules. These +are output on startup. To make sure there is no environment pollution you can |