diff options
Diffstat (limited to 'doc/README.org')
| -rw-r--r-- | doc/README.org | 24 |
1 files changed, 22 insertions, 2 deletions
diff --git a/doc/README.org b/doc/README.org index 3b96717f..494e2a70 100644 --- a/doc/README.org +++ b/doc/README.org @@ -11,6 +11,8 @@ - [[#run-mysql-server][Run MySQL server]] - [[#run-your-own-copy-of-gn2][Run your own copy of GN2]] - [[#source-deployment-and-other-information-on-reproducibility][Source deployment and other information on reproducibility]] + - [[#trouble-shooting][Trouble shooting]] + - [[#importerror-no-module-named-jinja2][ImportError: No module named jinja2]] * Introduction @@ -138,8 +140,8 @@ At some point you may want to fix the source code. Assuming you have Guix and Genenetwork2 installed (as described above) clone the GN2 repository from https://github.com/genenetwork/genenetwork2_diet -Copy the paths into your terminal from (mainly so PYTHON_PATH and -R_LIBS_SITE are set) +Copy-paste the paths into your terminal (mainly so PYTHON_PATH and +R_LIBS_SITE are set) from the information given by guix: : guix package --search-paths @@ -164,3 +166,21 @@ software. See the document [[GUIX-Reproducible-from-source.org]]. +* Trouble shooting + +** ImportError: No module named jinja2 + +If you have all the Guix packages installed this error points out that +the environment variables are not set. Copy-paste the paths into your +terminal (mainly so PYTHON_PATH and R_LIBS_SITE are set) from the +information given by guix: + +: guix package --search-paths + +On one system: + +: export PYTHONPATH="$HOME/.guix-profile/lib/python2.7/site-packages" +: export R_LIBS_SITE="$HOME/.guix-profile/site-library/" +: export GEM_PATH="$HOME/.guix-profile/lib/ruby/gems/2.2.0" + +and perhaps a few more. |