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-rwxr-xr-xbin/genenetwork26
1 files changed, 5 insertions, 1 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2
index 34fbc72e..145ce395 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -126,7 +126,11 @@ else
export PYLMM_COMMAND="$GN2_PROFILE/bin/pylmm_redis"
export GEMMA_COMMAND="$GN2_PROFILE/bin/gemma"
export GEMMA_WRAPPER_COMMAND="$GN2_PROFILE/bin/gemma-wrapper"
- if [ ! -d $PYTHONPATH ] ; then echo "PYTHONPATH not valid "$PYTHONPATH ; exit 1 ; fi
+ while IFS=":" read -ra PPATH; do
+ for PPart in "${PPATH[@]}"; do
+ if [ ! -d $PPart ] ; then echo "PYTHONPATH not valid "$PYTHONPATH ; exit 1 ; fi
+ done
+ done <<< "$PYTHONPATH"
if [ ! -d $R_LIBS_SITE ] ; then echo "R_LIBS_SITE not valid "$R_LIBS_SITE ; exit 1 ; fi
if [ ! -d $GEM_PATH ] ; then echo "GEM_PATH not valid "$GEM_PATH ; exit 1 ; fi
fi