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-rwxr-xr-xbin/genenetwork29
1 files changed, 9 insertions, 0 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2
index 5e791885..a7edb1c2 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -1,5 +1,11 @@
#! /bin/bash
#
+# Typical usage
+#
+# env GN2_PROFILE=~/opt/genenetwork2-phewas ./bin/genenetwork2
+#
+# Where GN2_PROFILE points to the GNU Guix profile used for deployment.
+#
# This will run the GN2 server (with default settings if none
# supplied). Typically you need a GNU Guix profile which is set with
# an environment variable (this profile is dictated by the
@@ -120,6 +126,9 @@ echo -n "dir $TMPDIR
dbfilename gn2.rdb
" | redis-server - &
+# Overrides for packages that are not yet public (currently r-auwerx)
+export R_LIBS_SITE=$R_LIBS_SITE:$HOME/.Rlibs/das1i1pm54dj6lbdcsw5w0sdwhccyj1a-r-3.3.2/lib/R/lib
+
# Start the flask server running GN2
cd $GN2_BASE_DIR/wqflask
echo "Starting with $settings"