1 files changed, 44 insertions, 0 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2
new file mode 100755
index 00000000..bbb2a19f
--- /dev/null
+++ b/bin/genenetwork2
@@ -0,0 +1,44 @@
+#! /bin/bash
+#
+# This will run the GN2 server (with default settings if none supplied).
+#
+# Environment settings can be used to preconfigure as well as a
+# settings.py file.
+
+# Absolute path to this script, e.g. /home/user/bin/foo.sh
+SCRIPT=$(readlink -f "$0")
+# Absolute path this script is in, thus /home/user/bin
+GN2_BASE_PATH=$(dirname $(dirname "$SCRIPT"))
+
+GN2_GUIX_PATH=$GN2_BASE_PATH/lib/python2.7/site-packages/genenetwork2-2.0-py2.7.egg
+if [ -d $GN2_GUIX_PATH ]; then
+  GN2_BASE_PATH=$GN2_GUIX_PATH
+fi
+echo $GN2_BASE_PATH
+
+# Handle settings parameter
+settings=$1
+if [ -z $settings ]; then settings=$GN2_BASE_PATH/etc/default_settings.py ; fi
+if [ ! -e $settings ]; then
+    echo "ERROR: can not locate settings file - pass it in the command line"
+    exit 1
+fi
+export WQFLASK_SETTINGS=$settings
+
+# We may change this one:
+export PYTHONPATH=$GN2_BASE_PATH/wqflask:$PYTHONPATH
+
+# TEMPDIR defaults to /tmp if nothing else
+if [ -z $TEMPDIR ]; then
+    TEMPDIR="/tmp"
+fi
+                         
+# Start the redis server
+echo -n "dir $TEMPDIR
+dbfilename gn2.rdb
+" | redis-server - &
+
+# Start the flask server running GN2
+cd $GN2_BASE_PATH/wqflask
+echo "Starting with $settings"
+/usr/bin/env python runserver.py