aboutsummaryrefslogtreecommitdiff
path: root/bin/genenetwork2
diff options
context:
space:
mode:
Diffstat (limited to 'bin/genenetwork2')
-rwxr-xr-xbin/genenetwork227
1 files changed, 24 insertions, 3 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2
index d3bf3299..3a8c3ff4 100755
--- a/bin/genenetwork2
+++ b/bin/genenetwork2
@@ -1,6 +1,14 @@
#! /bin/bash
#
-# This will run the GN2 server (with default settings if none supplied).
+# This will run the GN2 server (with default settings if none supplied). Pass in
+# your own settings file, e.g.
+#
+# ./bin/genenetwork2 ~/my_settings.py
+#
+# To run a maintenance script with settings (instead of the webserver) add that with
+# a -c switch, e.g.
+#
+# ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
#
# Environment settings can be used to preconfigure as well as a
# settings.py file.
@@ -18,7 +26,12 @@ echo $GN2_BASE_PATH
# Handle settings parameter
settings=$1
-if [ -z $settings ]; then settings=$GN2_BASE_PATH/etc/default_settings.py ; fi
+if [ -z $settings ]; then
+ # get default
+ settings=$GN2_BASE_PATH/etc/default_settings.py
+else
+ shift
+fi
if [ ! -e $settings ]; then
echo "ERROR: can not locate settings file - pass it in the command line"
exit 1
@@ -32,7 +45,15 @@ export PYTHONPATH=$GN2_BASE_PATH/wqflask:$PYTHONPATH
if [ -z $TEMPDIR ]; then
TEMPDIR="/tmp"
fi
-
+
+# Now handle command parameter -c
+if [ $1 = '-c' ] ; then
+ echo PYTHONPATH=$PYTHONPATH
+ echo RUNNING COMMAND $2
+ /usr/bin/env python $2
+ exit 0
+fi
+
echo "Starting the redis server:"
echo -n "dir $TEMPDIR
dbfilename gn2.rdb