diff options
| -rw-r--r-- | wqflask/wqflask/wgcna/gn3_wgcna.py | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/wqflask/wqflask/wgcna/gn3_wgcna.py b/wqflask/wqflask/wgcna/gn3_wgcna.py index f7ed4cef..9ab6b3e0 100644 --- a/wqflask/wqflask/wgcna/gn3_wgcna.py +++ b/wqflask/wqflask/wgcna/gn3_wgcna.py @@ -1,6 +1,7 @@ """module contains code to consume gn3-wgcna api and process data to be rendered by datatables """ +from utility.helper_functions import get_trait_db_obs def fetch_trait_data(requestform): @@ -13,6 +14,49 @@ def fetch_trait_data(requestform): return process_dataset(db_obj.trait_list) +def process_dataset(trait_list): + """process datasets and strains""" + + input_data = {} + traits = [] + strains = [] + + # xtodo unique traits and strains + + for trait in trait_list: + traits.append(trait[0].name) + + input_data[trait[0].name] = {} + for strain in trait[0].data: + strains.append(strain) + input_data[trait[0].name][strain] = trait[0].data[strain].value + + return { + "wgcna_input": input_data + } + + def process_dataset(trait_list): + """process datasets and strains""" + + input_data = {} + traits = [] + strains = [] + + # xtodo unique traits and strains + + for trait in trait_list: + traits.append(trait[0].name) + + input_data[trait[0].name] = {} + for strain in trait[0].data: + strains.append(strain) + input_data[trait[0].name][strain] = trait[0].data[strain].value + + return { + "wgcna_input": input_data + } + + def process_wgcna_data(response): """function for processing modeigene genes for create row data for datataba""" |