diff options
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index 5d424c97..47ad5638 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -234,7 +234,7 @@ def parse_loco_output(this_dataset, gwa_output_filename, loco="True"): marker['p_value'] = float(line.split("\t")[10]) marker['additive'] = -(float(line.split("\t")[7])/2) if math.isnan(marker['p_value']) or (marker['p_value'] <= 0): - marker['lod_score'] = 0 + marker['lod_score'] = marker['p_value'] = 0 else: marker['lod_score'] = -math.log10(marker['p_value']) marker_obs.append(marker) |