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-rw-r--r--wqflask/wqflask/templates/base.html2
-rw-r--r--wqflask/wqflask/templates/collections/view.html4
-rw-r--r--wqflask/wqflask/templates/gsearch_gene.html8
-rw-r--r--wqflask/wqflask/templates/gsearch_pheno.html4
-rw-r--r--wqflask/wqflask/templates/index_page.html6
-rwxr-xr-xwqflask/wqflask/templates/index_page_orig.html2
-rw-r--r--wqflask/wqflask/templates/search_result_page.html8
-rw-r--r--wqflask/wqflask/templates/show_trait_calculate_correlations.html2
8 files changed, 18 insertions, 18 deletions
diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html
index 0f4e5ef5..6b584751 100644
--- a/wqflask/wqflask/templates/base.html
+++ b/wqflask/wqflask/templates/base.html
@@ -66,7 +66,7 @@
<ul class="dropdown-menu">
<li><a href="/references">References</a></li>
<li><a href="/tutorials">Tutorials/Primers</a></li>
- <li><a href="http://gn1.genenetwork.org/glossary.html">Glossary of Term</a></li>
+ <li><a href="{{ url_for('glossary_blueprint.glossary') }}">Glossary of Term</a></li>
<li><a href="http://gn1.genenetwork.org/faq.html">FAQ</a></li>
<li><a href="/policies">Policies</a></li>
<li><a href="/links">Links</a></li>
diff --git a/wqflask/wqflask/templates/collections/view.html b/wqflask/wqflask/templates/collections/view.html
index d1a97310..873a6703 100644
--- a/wqflask/wqflask/templates/collections/view.html
+++ b/wqflask/wqflask/templates/collections/view.html
@@ -97,9 +97,9 @@
<th data-export="Description">Description</th>
<th data-export="Location">Location</th>
<th data-export="Mean">Mean</th>
- <th data-export="Max LRS">High P <a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="font-size: small; color: #FF0000;"> ?</sup></a></th>
+ <th data-export="Max LRS">High P <a href="{{ url_for('glossary_blueprint.glossary') }}#L" target="_blank"><sup style="font-size: small; color: #FF0000;"> ?</sup></a></th>
<th data-export="Peak Location">Peak Location</th>
- <th data-export="Add. Eff.">Effect Size <a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="font-size: small; color: #FF0000;"> ?</sup></a></th>
+ <th data-export="Add. Eff.">Effect Size <a href="{{ url_for('glossary_blueprint.glossary') }}#A" target="_blank"><sup style="font-size: small; color: #FF0000;"> ?</sup></a></th>
</tr>
</thead>
diff --git a/wqflask/wqflask/templates/gsearch_gene.html b/wqflask/wqflask/templates/gsearch_gene.html
index d2c78d65..d5bc4141 100644
--- a/wqflask/wqflask/templates/gsearch_gene.html
+++ b/wqflask/wqflask/templates/gsearch_gene.html
@@ -215,7 +215,7 @@
'orderSequence': [ "desc", "asc"]
},
{
- 'title': "Max<br>LRS<a href=\"http://genenetwork.org//glossary.html#LRS\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>",
+ 'title': "Max<br>LRS<a href=\"{{ url_for('glossary_blueprint.glossary') }}#LRS\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>",
'type': "natural-minus-na",
'data': "LRS_score_repr",
'orderSequence': [ "desc", "asc"]
@@ -227,7 +227,7 @@
'data': "max_lrs_text"
},
{
- 'title': "Additive<br>Effect<a href=\"http://genenetwork.org//glossary.html#A\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>",
+ 'title': "Additive<br>Effect<a href=\"{{ url_for('glossary_blueprint.glossary') }}#A\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>",
'type': "natural-minus-na",
'width': "50px",
'data': "additive",
@@ -262,9 +262,9 @@
'<th>Description</th>' +
'<th>Location</th>' +
'<th>Mean</th>' +
- '<th>Max LRS <a href="http://genenetwork.org//glossary.html#LRS" target="_blank" style="color: white;"><sup>?</sup></a></th>' +
+ '<th>Max LRS <a href="{{ url_for('glossary_blueprint.glossary') }}#LRS" target="_blank" style="color: white;"><sup>?</sup></a></th>' +
'<th>Max LRS Location</th>' +
- '<th>Additive Effect <a href="http://genenetwork.org//glossary.html#A" target="_blank" style="color: white;"><sup>?</sup></a></th>' +
+ '<th>Additive Effect <a href="{{ url_for('glossary_blueprint.glossary') }}#A" target="_blank" style="color: white;"><sup>?</sup></a></th>' +
'</tr>' +
'</tfoot>'
);
diff --git a/wqflask/wqflask/templates/gsearch_pheno.html b/wqflask/wqflask/templates/gsearch_pheno.html
index c44231f3..ccd4a9d9 100644
--- a/wqflask/wqflask/templates/gsearch_pheno.html
+++ b/wqflask/wqflask/templates/gsearch_pheno.html
@@ -218,7 +218,7 @@
'orderSequence': [ "desc", "asc"]
},
{
- 'title': "Max LRS<a href=\"http://genenetwork.org//glossary.html#LRS\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>",
+ 'title': "Max LRS<a href=\"{{ url_for('glossary_blueprint.glossary') }}#LRS\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>",
'type': "natural-minus-na",
'data': "LRS_score_repr",
'orderSequence': [ "desc", "asc"]
@@ -230,7 +230,7 @@
'data': "max_lrs_text"
},
{
- 'title': "Additive Effect<a href=\"http://genenetwork.org//glossary.html#A\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>",
+ 'title': "Additive Effect<a href=\"{{ url_for('glossary_blueprint.glossary') }}#A\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>",
'type': "natural-minus-na",
'data': "additive",
'orderSequence': [ "desc", "asc"]
diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html
index f8720d39..12c28e72 100644
--- a/wqflask/wqflask/templates/index_page.html
+++ b/wqflask/wqflask/templates/index_page.html
@@ -140,7 +140,7 @@
chromosome 1 between 25 and 30 Mb.</li>
<li><b>MEAN=(15 16) LRS=(23 46)</b> in the <b>Combined</b> field finds
- highly expressed genes (15 to 16 log2 units) AND with peak <a href="http://www.genenetwork.org/glossary.html#L">LRS</a>
+ highly expressed genes (15 to 16 log2 units) AND with peak <a href="{{ url_for('glossary_blueprint.glossary') }}#L">LRS</a>
linkage between 23 and 46.</li>
<li><b>RANGE=(1.5 2.5)</b> in the <b>Any</b> field finds traits with values with a specified fold-range (minimum = 1).
@@ -157,12 +157,12 @@
<a href="http://amigo.geneontology.org/amigo/medial_search?q=GO%3A0045202">Gene Ontology</a>.</li>
<li><b>GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)</b>
- finds synapse-associated genes with <a href="http://www.genenetwork.org/glossary.html#E">
+ finds synapse-associated genes with <a href="{{ url_for('glossary_blueprint.glossary') }}#E">
cis eQTL</a> on Chr 4 from 122 and 155 Mb with LRS scores
between 9 and 999.</li>
<li><b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b>
- finds diabetes-associated transcripts with peak <a href="http://www.genenetwork.org/glossary.html#E">
+ finds diabetes-associated transcripts with peak <a href="{{ url_for('glossary_blueprint.glossary') }}#E">
trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS
scores between 9 and 999.</li>
</ul>
diff --git a/wqflask/wqflask/templates/index_page_orig.html b/wqflask/wqflask/templates/index_page_orig.html
index 6b3bec9a..13ca52df 100755
--- a/wqflask/wqflask/templates/index_page_orig.html
+++ b/wqflask/wqflask/templates/index_page_orig.html
@@ -177,7 +177,7 @@
Gene Ontology</a>.</li>
<li><b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b>
- finds diabetes-associated transcripts with peak <a href="http://gn1.genenetwork.org/glossary.html#E">
+ finds diabetes-associated transcripts with peak <a href="{{ url_for('glossary_blueprint.glossary') }}#E">
trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS
scores between 9 and 999.</li>
</ul>
diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html
index 2318bfb8..6d9ea8fe 100644
--- a/wqflask/wqflask/templates/search_result_page.html
+++ b/wqflask/wqflask/templates/search_result_page.html
@@ -312,7 +312,7 @@
'orderSequence': [ "desc", "asc"]
},
{
- 'title': "High P<a href=\"http://genenetwork.org//glossary.html#LRS\" target=\"_blank\" style=\"color: white;\"><sup style=\"font-size: small; color: #FF0000;\"> ?</sup></a>",
+ 'title': "High P<a href=\"{{ url_for('glossary_blueprint.glossary') }}#LRS\" target=\"_blank\" style=\"color: white;\"><sup style=\"font-size: small; color: #FF0000;\"> ?</sup></a>",
'type': "natural-minus-na",
'data': "lrs_score",
'width': "60px",
@@ -325,7 +325,7 @@
'data': "lrs_location"
},
{
- 'title': "Effect Size<a href=\"http://genenetwork.org//glossary.html#A\" target=\"_blank\" style=\"color: white;\"><sup style=\"font-size: small; color: #FF0000;\"> ?</sup></a>",
+ 'title': "Effect Size<a href=\"{{ url_for('glossary_blueprint.glossary') }}#A\" target=\"_blank\" style=\"color: white;\"><sup style=\"font-size: small; color: #FF0000;\"> ?</sup></a>",
'type': "natural-minus-na",
'data': "additive",
'width': "85px",
@@ -381,7 +381,7 @@
'orderSequence': [ "desc", "asc"]
},
{
- 'title': "Max LRS<a href=\"http://genenetwork.org//glossary.html#LRS\" target=\"_blank\" style=\"color: white;\"><sup style=\"font-size: small; color: #FF0000;\"> ?</sup></a>",
+ 'title': "Max LRS<a href=\"{{ url_for('glossary_blueprint.glossary') }}#LRS\" target=\"_blank\" style=\"color: white;\"><sup style=\"font-size: small; color: #FF0000;\"> ?</sup></a>",
'type': "natural-minus-na",
'data': "lrs_score",
'width': "80px",
@@ -394,7 +394,7 @@
'data': "lrs_location"
},
{
- 'title': "Effect Size<a href=\"http://genenetwork.org//glossary.html#A\" target=\"_blank\" style=\"color: white;\"><sup style=\"font-size: small; color: #FF0000;\"> ?</sup></a>",
+ 'title': "Effect Size<a href=\"{{ url_for('glossary_blueprint.glossary') }}#A\" target=\"_blank\" style=\"color: white;\"><sup style=\"font-size: small; color: #FF0000;\"> ?</sup></a>",
'type': "natural-minus-na",
'width': "120px",
'data': "additive",
diff --git a/wqflask/wqflask/templates/show_trait_calculate_correlations.html b/wqflask/wqflask/templates/show_trait_calculate_correlations.html
index bc1d4091..4f25e90a 100644
--- a/wqflask/wqflask/templates/show_trait_calculate_correlations.html
+++ b/wqflask/wqflask/templates/show_trait_calculate_correlations.html
@@ -120,7 +120,7 @@
is computed
between trait data and any
other traits in the sample database selected above. Use
- <a href="http://www.genenetwork.org/glossary.html#Correlations">Spearman
+ <a href="{{ url_for('glossary_blueprint.glossary') }}#Correlations">Spearman
Rank</a>
when the sample size is small (&lt;20) or when there are influential outliers.
</span>
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-23 20:07:07 +0000