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| -rwxr-xr-x | gn2/wqflask/templates/index_page.html | 893 |
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diff --git a/gn2/wqflask/templates/index_page.html b/gn2/wqflask/templates/index_page.html index f2294e60..d3af519b 100755 --- a/gn2/wqflask/templates/index_page.html +++ b/gn2/wqflask/templates/index_page.html @@ -1,518 +1,519 @@ {% extends "base.html" %} -{% block title %}GeneNetwork{% endblock %} +{% block title %} GeneNetwork {% endblock %} + +<link rel="stylesheet" + type="text/css" + href="{{ url_for('css', filename='uikit/css/uikit.min.css') }}" /> + + {% block css %} - <!-- UIkit CSS --> - <link rel="stylesheet" - type="text/css" - href="{{ url_for('css', filename='uikit/css/uikit.min.css') }}" /> - <link rel="stylesheet" href="/static/new/css/index_page.css" /> - <!-- UIkit JS --> - <script language="javascript" - type="text/javascript" - src="{{ url_for('js', filename='uikit/js/uikit.min.js') }}"></script> - <script language="javascript" - type="text/javascript" - src="{{ url_for('js', filename='uikit/js/uikit-icons.min.js') }}"></script> - <!--locally built emfed package see source file:https://github.com/sampsyo/emfed --> - <script type="module" src="static/new/javascript/emfed.bundle.js"></script> - <link rel="stylesheet" type="text/css" href="static/new/css/toots.css"> - <style TYPE="text/css"> - p.interact { display: none; } +<link rel="stylesheet" href="/static/new/css/index_page.css" /> +<link rel="stylesheet" type="text/css" href="static/new/css/toots.css"> +<style TYPE="text/css"> + p.interact { display: none; } - .media { - padding-bottom:10px; - border-bottom: 1px solid #c8ccc9; - } - .media img { + .media { + padding-bottom:10px; + border-bottom: 1px solid #c8ccc9; + } - width: 95%; - height: 100%; - border-radius: 5px; - /*transform: scale(1.1); image small?*/ - border:1px solid #c8ccc9; - } + .media img { - .toots { - margin:0 auto; - max-width: 500px; - height: 160px; - position: relative; - border-radius:10px; - background-color: #F9F9F9; + width: 95%; + height: 100%; + border-radius: 5px; + /*transform: scale(1.1); image small?*/ + border:1px solid #c8ccc9; + } - } + .toots { + margin:0 auto; + max-width: 500px; + height: 160px; + position: relative; + border-radius:10px; + background-color: #F9F9F9; - h2 { - margin-bottom: 0px; - } + } - ul { - margin-top: 0px; - } + h2 { + margin-bottom: 0px; + } - .toot { - padding-top:8px; - background:#f9f9f9; - color:#000; - - } - </style> + ul { + margin-top: 0px; + } + + .toot { + padding-top:8px; + background:#f9f9f9; + color:#000; + + } + +</style> {% endblock %} {% block search %} - {% include "gsearch.html" %} +{% include "gsearch.html" %} {% endblock %} {% block content %} - <!-- Start of body --> - <div class="container-fluid" style="min-width: 1210px;"> - {{ flash_me() }} - {% if anon_collections | length > 0 %} - <div class="panel panel-warning"> - <div class="panel-heading"> - <h3 class="panel-title">Import Anonymous Collections</h3> +<div class="container-fluid" style="min-width: 1210px;"> + {{ flash_me() }} + {% if anon_collections | length > 0 %} + <div class="panel panel-warning"> + <div class="panel-heading"> + <h3 class="panel-title">Import Anonymous Collections</h3> + </div> + <div class="panel-body"> + <p> + There + {% if anon_collections | length > 1 %} + are + {% else %} + is + {% endif %} + {{ anon_collections | length }} anonymous + collection + {% if anon_collections | length > 1 %}s{% endif %} + associated with your current session. What do you wish to do? + </p> + <p class="text-danger" style="font-weight: bold;"> + <small> + If you choose to ignore this, the anonymous collections will be + eventually deleted and lost. + </small> + </p> + <form action="{{ url_for("handle_anonymous_collections") }}" method="post"> + <div class="form-group"> + <input type="radio" id="rdo-import" value="import" name="anon_choice" /> + <label for="rdo-import">Import</label> + <input type="radio" id="rdo-delete" value="delete" name="anon_choice" /> + <label for="rdo-delete">Delete</label> </div> - <div class="panel-body"> - <p> - There - {% if anon_collections | length > 1 %} - are - {% else %} - is - {% endif %} - {{ anon_collections | length }} anonymous - collection - {% if anon_collections | length > 1 %}s{% endif %} - associated with your current session. What do you wish to do? - </p> - <p class="text-danger" style="font-weight: bold;"> - <small> - If you choose to ignore this, the anonymous collections will be - eventually deleted and lost. - </small> - </p> - <form action="{{ url_for("handle_anonymous_collections") }}" method="post"> - <div class="form-group"> - <input type="radio" id="rdo-import" value="import" name="anon_choice" /> - <label for="rdo-import">Import</label> - <input type="radio" id="rdo-delete" value="delete" name="anon_choice" /> - <label for="rdo-delete">Delete</label> - </div> - <input type="submit" class="btn btn-warning" value="Submit" /> - </form> + <input type="submit" class="btn btn-warning" value="Submit" /> + </form> + </div> + </div> + {% endif %} + <div class="row" style="width: 100%;"> + <div class="col-xs-4" + style="margin-right:50px; + min-width: 530px; + max-width: 550px"> + <section id="search"> + <div class="page-header"> + <h2>Select and Search</h2> </div> - </div> - {% endif %} - <div class="row" style="width: 100%;"> - <div class="col-xs-4" - style="margin-right:50px; - min-width: 530px; - max-width: 550px"> - <section id="search"> - <div class="page-header"> - <h2>Select and Search</h2> - </div> - <form method="get" - action="/search" - target="_blank" - id="searchform" - name="SEARCHFORM" - data-gn_server_url="{{ gn_server_url }}"> - <fieldset> - <div style="padding-left: 20px; - padding-right: 20px" - class="form-horizontal"> - <div class="form-group"> - <label for="species" - class="col-xs-1 control-label" - style="width: 65px !important">Species:</label> - <div class="col-xs-10 controls input-append" - style="display: flex; - padding-left: 20px"> - <div class="col-9"> - <select name="species" - id="species" - class="form-control" - style="width: 340px !important"> - <option>Loading...</option> - </select> - </div> + <form method="get" + action="/search" + target="_blank" + id="searchform" + name="SEARCHFORM" + data-gn_server_url="{{ gn_server_url }}"> + <fieldset> + <div style="padding-left: 20px; + padding-right: 20px" + class="form-horizontal"> + <div class="form-group"> + <label for="species" + class="col-xs-1 control-label" + style="width: 65px !important">Species:</label> + <div class="col-xs-10 controls input-append" + style="display: flex; + padding-left: 20px"> + <div class="col-9"> + <select name="species" + id="species" + class="form-control" + style="width: 340px !important"> + <option>Loading...</option> + </select> </div> </div> - <div class="form-group"> - <label for="group" - class="col-xs-1 control-label" - style="width: 65px !important">Group:</label> - <div class="col-xs-10 controls input-append" - style="display: flex; - padding-left: 20px"> - <div class="col-9"> - <select name="group" - id="group" - class="form-control" - style="width: 340px !important"> - <option>Loading...</option> - </select> - <i class="icon-question-sign"></i> - </div> - <div class="col-3" style="margin-left: 10px;"> - <button type="button" id="group_info" class="btn form-control info-button"> - <span class="glyphicon glyphicon-flag"></span> Info - </button> - </div> + </div> + <div class="form-group"> + <label for="group" + class="col-xs-1 control-label" + style="width: 65px !important">Group:</label> + <div class="col-xs-10 controls input-append" + style="display: flex; + padding-left: 20px"> + <div class="col-9"> + <select name="group" + id="group" + class="form-control" + style="width: 340px !important"> + <option>Loading...</option> + </select> + <i class="icon-question-sign"></i> + </div> + <div class="col-3" style="margin-left: 10px;"> + <button type="button" id="group_info" class="btn form-control info-button"> + <span class="glyphicon glyphicon-flag"></span> Info + </button> </div> </div> - <div class="form-group"> - <label for="tissue" - class="col-xs-1 control-label" - style="width: 65px !important">Type:</label> - <div class="col-xs-10 controls input-append" - style="display: flex; - padding-left: 20px"> - <div class="col-9"> - <select name="type" - id="type" - class="form-control" - style="width: 340px !important"> - <option>Loading...</option> - </select> - </div> - <div class="col-3" style="margin-left: 10px;"> - <button type="button" id="dataset_info" class="btn form-control info-button"> - <span class="glyphicon glyphicon-flag"></span> Info - </button> - </div> + </div> + <div class="form-group"> + <label for="tissue" + class="col-xs-1 control-label" + style="width: 65px !important">Type:</label> + <div class="col-xs-10 controls input-append" + style="display: flex; + padding-left: 20px"> + <div class="col-9"> + <select name="type" + id="type" + class="form-control" + style="width: 340px !important"> + <option>Loading...</option> + </select> + </div> + <div class="col-3" style="margin-left: 10px;"> + <button type="button" id="dataset_info" class="btn form-control info-button"> + <span class="glyphicon glyphicon-flag"></span> Info + </button> </div> </div> - <div class="form-group"> - <label for="dataset" - class="col-xs-1 control-label" - style="width: 65px !important">Dataset:</label> - <div class="col-xs-10 controls" style="display: flex; padding-left: 20px;"> - <div class="col-9"> - <select name="dataset" - id="dataset" - class="form-control" - style="max-width: 550px; - width: 450px !important"> - <option>Loading...</option> - </select> - <i class="icon-question-sign"></i> - </div> + </div> + <div class="form-group"> + <label for="dataset" + class="col-xs-1 control-label" + style="width: 65px !important">Dataset:</label> + <div class="col-xs-10 controls" style="display: flex; padding-left: 20px;"> + <div class="col-9"> + <select name="dataset" + id="dataset" + class="form-control" + style="max-width: 550px; + width: 450px !important"> + <option>Loading...</option> + </select> + <i class="icon-question-sign"></i> </div> </div> - <!-- GET ANY SEARCH --> - <div class="form-group"> - <label for="or_search" - class="col-xs-1 control-label" - style="padding-left: 0px; - padding-right: 0px; - width: 65px !important">Get Any:</label> - <div class="col-xs-10 controls" style="padding-left: 20px;"> - <div class="col-8 autocomplete"> - <textarea id="myInput" - onkeyup="pressed(event)" - name="search_terms_or" - rows="1" - class="form-control search-query" - style="resize: vertical; - max-width: 550px; - width: 450px !important" - id="or_search"></textarea> - </div> + </div> + <!-- GET ANY SEARCH --> + <div class="form-group"> + <label for="or_search" + class="col-xs-1 control-label" + style="padding-left: 0px; + padding-right: 0px; + width: 65px !important">Get Any:</label> + <div class="col-xs-10 controls" style="padding-left: 20px;"> + <div class="col-8 autocomplete"> + <textarea id="myInput" + onkeyup="pressed(event)" + name="search_terms_or" + rows="1" + class="form-control search-query" + style="resize: vertical; + max-width: 550px; + width: 450px !important" + id="or_search"></textarea> </div> </div> - <!-- GET ANY HELP --> - <div class="form-group"> - <label for="btsearch" - class="col-xs-1 control-label" - style="width: 65px !important"></label> - <div class="col-xs-10 controls" style="padding-left: 20px;"> - <div class="col-12 controls"> - Enter terms, genes, ID numbers in the <b>Search</b> field. - <br> - Use <b>*</b> or <b>?</b> wildcards (Cyp*a?, synap*). - <br> - Use <b>quotes</b> for terms such as <i>"tyrosine kinase"</i>. - <div> - <strong> - <a style="text-decoration: none" - href="https://issues.genenetwork.org/topics/xapian/xapian-search-queries" - target="_blank">see more hints</a> - </strong> - </div> + </div> + <!-- GET ANY HELP --> + <div class="form-group"> + <label for="btsearch" + class="col-xs-1 control-label" + style="width: 65px !important"></label> + <div class="col-xs-10 controls" style="padding-left: 20px;"> + <div class="col-12 controls"> + Enter terms, genes, ID numbers in the <b>Search</b> field. + <br> + Use <b>*</b> or <b>?</b> wildcards (Cyp*a?, synap*). + <br> + Use <b>quotes</b> for terms such as <i>"tyrosine kinase"</i>. + <div> + <strong> + <a style="text-decoration: none" + href="https://issues.genenetwork.org/topics/xapian/xapian-search-queries" + target="_blank">see more hints</a> + </strong> </div> </div> </div> - <div class="form-group"> - <label for="and_search" - class="col-xs-1 control-label" - style="padding-left: 0px; - padding-right: 0px; - width: 65px !important">Combined:</label> - <div class="col-xs-10 controls" style="padding-left: 20px;"> - <div class="col-8 autocomplete"> - <textarea id="myInput" - onkeyup="pressed(event)" - name="search_terms_and" - rows="1" - class="form-control search-query" - style="resize: vertical; - max-width: 550px; - width: 450px !important" - id="and_search"></textarea> - </div> + </div> + <div class="form-group"> + <label for="and_search" + class="col-xs-1 control-label" + style="padding-left: 0px; + padding-right: 0px; + width: 65px !important">Combined:</label> + <div class="col-xs-10 controls" style="padding-left: 20px;"> + <div class="col-8 autocomplete"> + <textarea id="myInput" + onkeyup="pressed(event)" + name="search_terms_and" + rows="1" + class="form-control search-query" + style="resize: vertical; + max-width: 550px; + width: 450px !important" + id="and_search"></textarea> </div> </div> - <div class="form-group"> - <label for="btsearch" - class="col-xs-1 control-label" - style="width: 65px !important"></label> - <div class="col-xs-10 controls" style="display: flex; padding-left: 20px;"> - <div class="col-2 controls"> - <button id="btsearch" class="btn btn-primary form-control"> - <span class="glyphicon glyphicon-search"></span> Search - </button> - </div> - <div class="col-2 align-self-end controls" style="padding-left: 20px;"> - <button type="button" id="make_default" class="btn form-control info-button"> - <span class="glyphicon glyphicon-pushpin"></span> Lock Menu - </button> - </div> + </div> + <div class="form-group"> + <label for="btsearch" + class="col-xs-1 control-label" + style="width: 65px !important"></label> + <div class="col-xs-10 controls" style="display: flex; padding-left: 20px;"> + <div class="col-2 controls"> + <button id="btsearch" class="btn btn-primary form-control"> + <span class="glyphicon glyphicon-search"></span> Search + </button> + </div> + <div class="col-2 align-self-end controls" style="padding-left: 20px;"> + <button type="button" id="make_default" class="btn form-control info-button"> + <span class="glyphicon glyphicon-pushpin"></span> Lock Menu + </button> </div> </div> - <!-- SEARCH, MAKE DEFAULT --> - <div class="form-group"></div> - <input type="hidden" name="accession_id" value="None" class="form-control"> - <input type="hidden" name="FormID" value="searchResult" class="form-control"> </div> - </fieldset> - </form> - </section> - <section id="advanced"> - <div class="page-header"> - <h2>Advanced Commands</h2> + <!-- SEARCH, MAKE DEFAULT --> + <div class="form-group"></div> + <input type="hidden" name="accession_id" value="None" class="form-control"> + <input type="hidden" name="FormID" value="searchResult" class="form-control"> + </div> + </fieldset> + </form> + </section> + <section id="advanced"> + <div class="page-header"> + <h2>Advanced Commands</h2> + </div> + <p> + You can also use advanced commands. Copy these simple examples into the Get Any field for single term searches and Combined for searches with multiple terms: + </p> + <ul> + <li> + <b>POSITION=(chr1 25 30)</b> finds genes, markers, or transcripts on + chromosome 1 between 25 and 30 Mb. + </li> + <li> + <b>MEAN=(15 16)</b> in the <b>Combined</b> field finds + highly expressed genes (15 to 16 log2 units) + </li> + <li> + <b>RANGE=(1.5 2.5)</b> in the <b>Any</b> field finds traits with values with a specified fold-range (minimum = 1). + Useful for finding "housekeeping genes" <b>(1.0 1.2)</b> or highly variable molecular assays <b>(10 100)</b>. + </li> + <li> + <b>LRS=(15 1000)</b> or <b>LOD=(2 8)</b> finds all traits with peak LRS or LOD scores between lower and upper limits. + </li> + <li> + <b>LRS=(9 999 Chr4 122 155)</b> finds all traits on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999. + </li> + <li> + <b>cisLRS=(15 1000 5)</b> or <b>cisLOD=(2 8 5)</b> finds all cis eQTLs with peak LRS or LOD scores between lower and upper limits, + with an <b>inclusion</b> zone of 5 Mb around the parent gene. + </li> + <li> + <b>transLRS=(15 1000 5)</b> or <b>transLOD=(2 8 5)</b> finds all trans eQTLs with peak LRS or LOD scores between lower and upper limits, + with an <b>exclusion</b> zone of 5 Mb around the parent gene. You can also add a fourth term specifying which chromosome you want the transLRS to be on + (for example transLRS=(15 1000 5 7) would find all trans eQTLs with peak LRS on chromosome 7 that is also a trans eQTL with exclusionary zone of 5Mb). + </li> + <li> + <b>POSITION=(Chr4 122 130) cisLRS=(9 999 10)</b> + finds all traits on Chr 4 from 122 and 155 Mb with cisLRS scores + between 9 and 999 and an inclusion zone of 10 Mb. + </li> + <li> + <b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF">GeneRIF</a> links. + </li> + <li> + <b>WIKI=nicotine</b> searches <a href="http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki">GeneWiki</a> for genes that you or other users have annotated + with the word <i>nicotine</i>. + </li> + <li> + <b>GO:0045202</b> searches for synapse-associated genes listed in the + <a href="http://amigo.geneontology.org/amigo/medial_search?q=GO%3A0045202">Gene Ontology</a>. + </li> + <li> + <b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b> + finds diabetes-associated transcripts with peak <a href="{{ url_for("gn_docs_blueprint.glossary") }}#E">trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS + scores between 9 and 999. + </li> + </ul> + </section> + </div> + <div class="col-xs-4" style="width: 600px !important;"> + <section id="tutorials"> + <div class="page-header"> + <h2>Tutorials</h2> + </div> + <div class="uk-grid-match uk-child-width-1-3@m" uk-grid> + <div> + <strong><a class="uk-link-text" href="/tutorials">Webinars & Courses</a></strong> + <br> + In-person courses, live webinars and webinar recordings + <br> + <a href="/tutorials" class="uk-icon-link" uk-icon="laptop" ratio="2"></a> + </div> + <div> + <strong><a class="uk-link-text" href="/tutorials">Tutorials</a></strong> + <br> + Tutorials: Training materials in HTML, PDF and video formats + <br> + <a href="/tutorials" class="uk-icon-link" uk-icon="file-text" ratio="2"></a> </div> - <p> - You can also use advanced commands. Copy these simple examples into the Get Any field for single term searches and Combined for searches with multiple terms: - </p> + <div> + <strong><a class="uk-link-text" href="/tutorials">Documentation</a></strong> + <br> + Online manuals, handbooks, fact sheets and FAQs + <br> + <a href="/tutorials" class="uk-icon-link" uk-icon="album" ratio="2"></a> + </div> + </div> + </section> + <section id="news-section"> + <div class="page-header"> + <h2>News</h2> + </div> + <div id="mastadon" + style="height: 405px; + overflow: scroll; + overflow-x: hidden"> + <a class="mastodon-feed" + target="_blank" + href="https://genomic.social/@genenetwork" + data-toot-limit="5">Genenetwork mastadon</a> + </div> + <div align="right"> + <a href="https://genomic.social/@genenetwork">more news items...</a> + </div> + </section> + <section id="websites"> + <div class="page-header"> + <h2>Links</h2> + </div> + <ul> + <li>Github</li> <ul> <li> - <b>POSITION=(chr1 25 30)</b> finds genes, markers, or transcripts on - chromosome 1 between 25 and 30 Mb. + <a href="https://github.com/genenetwork/genenetwork2">GN2 Source Code</a> </li> <li> - <b>MEAN=(15 16)</b> in the <b>Combined</b> field finds - highly expressed genes (15 to 16 log2 units) + <a href="https://github.com/genenetwork/genenetwork3">GN3 Source Code</a> </li> - <li> - <b>RANGE=(1.5 2.5)</b> in the <b>Any</b> field finds traits with values with a specified fold-range (minimum = 1). - Useful for finding "housekeeping genes" <b>(1.0 1.2)</b> or highly variable molecular assays <b>(10 100)</b>. + <li> + <a href="https://github.com/genenetwork/genenetwork">GN1 Source Code</a> </li> <li> - <b>LRS=(15 1000)</b> or <b>LOD=(2 8)</b> finds all traits with peak LRS or LOD scores between lower and upper limits. + <a href="https://github.com/genenetwork/sysmaintenance">System Maintenance Code</a> </li> + </ul> + </ul> + <ul> + <li>GeneNetwork v2</li> + <ul> <li> - <b>LRS=(9 999 Chr4 122 155)</b> finds all traits on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999. + <a href="https://genenetwork.org/">Main website</a> at UTHSC </li> + </ul> + </ul> + <ul> + <li>GeneNetwork v1</li> + <ul> <li> - <b>cisLRS=(15 1000 5)</b> or <b>cisLOD=(2 8 5)</b> finds all cis eQTLs with peak LRS or LOD scores between lower and upper limits, - with an <b>inclusion</b> zone of 5 Mb around the parent gene. + <a href="http://gn1.genenetwork.org/">Main website</a> at UTHSC </li> + </ul> + </ul> + <ul> + <li>Affiliates</li> + <ul> <li> - <b>transLRS=(15 1000 5)</b> or <b>transLOD=(2 8 5)</b> finds all trans eQTLs with peak LRS or LOD scores between lower and upper limits, - with an <b>exclusion</b> zone of 5 Mb around the parent gene. You can also add a fourth term specifying which chromosome you want the transLRS to be on - (for example transLRS=(15 1000 5 7) would find all trans eQTLs with peak LRS on chromosome 7 that is also a trans eQTL with exclusionary zone of 5Mb). + <b><a href="http://gn1.genenetwork.org">GeneNetwork 1</a> at UTHSC</b> </li> <li> - <b>POSITION=(Chr4 122 130) cisLRS=(9 999 10)</b> - finds all traits on Chr 4 from 122 and 155 Mb with cisLRS scores - between 9 and 999 and an inclusion zone of 10 Mb. + <a href="https://systems-genetics.org/">Systems Genetics</a> at EPFL </li> <li> - <b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF">GeneRIF</a> links. + <a href="http://bnw.genenetwork.org/">Bayesian Network Web Server</a> at UTHSC </li> <li> - <b>WIKI=nicotine</b> searches <a href="http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki">GeneWiki</a> for genes that you or other users have annotated - with the word <i>nicotine</i>. + <a href="https://www.geneweaver.org/">GeneWeaver</a> </li> <li> - <b>GO:0045202</b> searches for synapse-associated genes listed in the - <a href="http://amigo.geneontology.org/amigo/medial_search?q=GO%3A0045202">Gene Ontology</a>. + <a href="https://phenogen.org/">PhenoGen</a> at University of Colorado </li> <li> - <b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b> - finds diabetes-associated transcripts with peak <a href="{{ url_for("gn_docs_blueprint.glossary") }}#E">trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS - scores between 9 and 999. + <a href="http://www.webgestalt.org/">WebGestalt</a> at Baylor </li> </ul> - </section> - </div> - <div class="col-xs-4" style="width: 600px !important;"> - <section id="tutorials"> - <div class="page-header"> - <h2>Tutorials</h2> - </div> - <div class="uk-grid-match uk-child-width-1-3@m" uk-grid> - <div> - <strong><a class="uk-link-text" href="/tutorials">Webinars & Courses</a></strong> - <br> - In-person courses, live webinars and webinar recordings - <br> - <a href="/tutorials" class="uk-icon-link" uk-icon="laptop" ratio="2"></a> - </div> - <div> - <strong><a class="uk-link-text" href="/tutorials">Tutorials</a></strong> - <br> - Tutorials: Training materials in HTML, PDF and video formats - <br> - <a href="/tutorials" class="uk-icon-link" uk-icon="file-text" ratio="2"></a> - </div> - <div> - <strong><a class="uk-link-text" href="/tutorials">Documentation</a></strong> - <br> - Online manuals, handbooks, fact sheets and FAQs - <br> - <a href="/tutorials" class="uk-icon-link" uk-icon="album" ratio="2"></a> - </div> - </div> - </section> - <section id="news-section"> - <div class="page-header"> - <h2>News</h2> - </div> - <div id="mastadon" - style="height: 405px; - overflow: scroll; - overflow-x: hidden"> - <a class="mastodon-feed" - target="_blank" - href="https://genomic.social/@genenetwork" - data-toot-limit="5">Genenetwork mastadon</a> - </div> - <div align="right"> - <a href="https://genomic.social/@genenetwork">more news items...</a> - </div> - </section> - <section id="websites"> - <div class="page-header"> - <h2>Links</h2> - </div> - <ul> - <li>Github</li> - <ul> - <li> - <a href="https://github.com/genenetwork/genenetwork2">GN2 Source Code</a> - </li> - <li> - <a href="https://github.com/genenetwork/genenetwork3">GN3 Source Code</a> - </li> - <li> - <a href="https://github.com/genenetwork/genenetwork">GN1 Source Code</a> - </li> - <li> - <a href="https://github.com/genenetwork/sysmaintenance">System Maintenance Code</a> - </li> - </ul> - </ul> - <ul> - <li>GeneNetwork v2</li> - <ul> - <li> - <a href="https://genenetwork.org/">Main website</a> at UTHSC - </li> - </ul> - </ul> + </ul> + <ul> + <li>GeneNetwork hosted portals</li> <ul> - <li>GeneNetwork v1</li> - <ul> - <li> - <a href="http://gn1.genenetwork.org/">Main website</a> at UTHSC - </li> - </ul> - </ul> - <ul> - <li>Affiliates</li> - <ul> - <li> - <b><a href="http://gn1.genenetwork.org">GeneNetwork 1</a> at UTHSC</b> - </li> - <li> - <a href="https://systems-genetics.org/">Systems Genetics</a> at EPFL - </li> - <li> - <a href="http://bnw.genenetwork.org/">Bayesian Network Web Server</a> at UTHSC - </li> - <li> - <a href="https://www.geneweaver.org/">GeneWeaver</a> - </li> - <li> - <a href="https://phenogen.org/">PhenoGen</a> at University of Colorado - </li> - <li> - <a href="http://www.webgestalt.org/">WebGestalt</a> at Baylor - </li> - </ul> - </ul> - <ul> - <li>GeneNetwork hosted portals</li> - <ul> - <li> - <a href="https://www.opar.io/">Omics Portal For Addiction Research</a> - </li> - <li> - <a href="https://msk.genenetwork.org/">GN4MSK musculoskeletal</a> - </li> - <li> - <a href="https://genecup.org/">GeneCup: Mining PubMed for Gene Relationships using Custom Ontologies</a> - </li> - </ul> + <li> + <a href="https://www.opar.io/">Omics Portal For Addiction Research</a> + </li> + <li> + <a href="https://msk.genenetwork.org/">GN4MSK musculoskeletal</a> + </li> + <li> + <a href="https://genecup.org/">GeneCup: Mining PubMed for Gene Relationships using Custom Ontologies</a> + </li> </ul> - </section> - </div> + </ul> + </section> </div> </div> +</div> + {% endblock %} +<script language="javascript" + type="text/javascript" + src="{{ url_for('js', filename='uikit/js/uikit-icons.min.js') }}"></script> +<script src="{{ url_for('js', filename='jquery/jquery.min.js') }}" + type="text/javascript"></script> +<script src="{{ url_for('js', filename='bootstrap/js/bootstrap.min.js') }}" + type="text/javascript"></script> {% block js %} - <script src="/static/new/javascript/dataset_select_menu_orig.js"></script> - <script src="{{ url_for('js', filename='jquery/jquery.min.js') }}" - type="text/javascript"></script> - <script src="{{ url_for('js', filename='bootstrap/js/bootstrap.min.js') }}" - type="text/javascript"></script> - <script type="text/javascript"> -$(document).on('submit', '#searchform', function(event){ +<!--Note this is locally built emfed package see source file:https://github.com/sampsyo/emfed --> +<script type="module" src="static/new/javascript/emfed.bundle.js"></script> +<script src="/static/new/javascript/dataset_select_menu_orig.js"></script> +<script> + + $(document).on('submit', '#searchform', function(event){ - event.preventDefault() - let user_searches = []; 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