diff options
| -rw-r--r-- | wqflask/wqflask/templates/ctl_setup.html | 109 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/wgcna_setup.html | 85 |
2 files changed, 98 insertions, 96 deletions
diff --git a/wqflask/wqflask/templates/ctl_setup.html b/wqflask/wqflask/templates/ctl_setup.html index 9c0d7bea..592e4b36 100644 --- a/wqflask/wqflask/templates/ctl_setup.html +++ b/wqflask/wqflask/templates/ctl_setup.html @@ -1,65 +1,70 @@ {% extends "base.html" %} -{% block title %}WCGNA analysis{% endblock %} +{% block title %}CTL analysis{% endblock %} {% block content %} <!-- Start of body --> <div class="container"> + {% if request.form['trait_list'].split(",")|length < 4 %} + <div class="alert alert-danger" role="alert"> + <span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span> + <span class="sr-only">Error:</span> + <h2>Too few phenotypes as input</h2> + Please make sure you select enough phenotypes / genes to perform CTL. Your collection needs to contain at least 4 different traits. You provided {{request.form['trait_list'].split(',')|length}} traits as input. + </div> + {% else %} <h1>CTL analysis parameters</h1> {{(request.form['trait_list'].split(',')|length -1)}} phenotypes as input -<form action="/ctl_results" method="post" class="form-horizontal"> - <input type="hidden" name="trait_list" id="trait_list" value= "{{request.form['trait_list']}}"> + <form action="/ctl_results" method="post" class="form-horizontal"> + <input type="hidden" name="trait_list" id="trait_list" value= "{{request.form['trait_list']}}"> + <div class="dropdown"> + <label for="Strategy">Strategy</label> + <div class="col-sm-10"> + <select name="strategy" id="strategy"> + <option value="Exact">Exact</option> + <option value="Full">Full</option> + <option value="Pairwise">Pairwise</option> + </select> + </div> + </div> - <div class="dropdown"> - <label for="Strategy">Strategy</label> - <div class="col-sm-10"> - <select name="strategy" id="strategy"> - <option value="Exact">Exact</option> - <option value="Full">Full</option> - <option value="Pairwise">Pairwise</option> - </select> - </div> - </div> + <div class="dropdown"> + <label for="Permutations">Number of permutation (Used when strategy is Full or Pairwise)</label> + <div class="col-sm-10"> + <select name="nperm" id="nperm"> + <option value="100">100</option> + <option value="1000" selected="selected">1000</option> + <option value="10000">10000</option> + </select> + </div> + </div> - <div class="dropdown"> - <label for="Permutations">Number of permutation (Used when strategy is Full or Pairwise)</label> - <div class="col-sm-10"> - <select name="nperm" id="nperm"> - <option value="100">100</option> - <option value="1000" selected="selected">1000</option> - <option value="10000">10000</option> - </select> - </div> - </div> - - <div class="dropdown"> - <label for="Coefficient">Type of correlation coefficient</label> - <div class="col-sm-10"> - <select name="parametric" id="parametric"> - <option value="False">Spearman</option> - <option value="True">Pearson</option> - </select> - </div> - </div> - - - <div class="dropdown"> - <label for="Significance">Significance level</label> - <div class="col-sm-10"> - <select name="significance" id="significance"> - <option value="0.1">0.1</option> - <option value="0.05" selected="selected">0.05</option> - <option value="0.001">0.001</option> - </select> - </div> - </div> - <br> - <div class="form-group"> - <div class="col-sm-10"> - <input type="submit" class="btn btn-primary" value="Run CTL using these settings" /> - </div> - </div> + <div class="dropdown"> + <label for="Coefficient">Type of correlation coefficient</label> + <div class="col-sm-10"> + <select name="parametric" id="parametric"> + <option value="False">Spearman</option> + <option value="True">Pearson</option> + </select> + </div> + </div> + <div class="dropdown"> + <label for="Significance">Significance level</label> + <div class="col-sm-10"> + <select name="significance" id="significance"> + <option value="0.1">0.1</option> + <option value="0.05" selected="selected">0.05</option> + <option value="0.001">0.001</option> + </select> + </div> + </div> + <br> + <div class="form-group"> + <div class="col-sm-10"> + <input type="submit" class="btn btn-primary" value="Run CTL using these settings" /> + </div> + </div> </form> - +{% endif %} </div> {% endblock %} diff --git a/wqflask/wqflask/templates/wgcna_setup.html b/wqflask/wqflask/templates/wgcna_setup.html index b4a5730d..c5461497 100644 --- a/wqflask/wqflask/templates/wgcna_setup.html +++ b/wqflask/wqflask/templates/wgcna_setup.html @@ -4,49 +4,46 @@ {% block content %} <!-- Start of body --> <h1> WGCNA analysis parameters</h1> <div class="container"> - {% if request.form['trait_list'].split(",")|length <= 4 %} - - <div class="alert alert-danger" role="alert"> - <span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span> - <span class="sr-only">Error:</span> - <h2> - Too few phenotypes as input - </h2> - Please make sure you select enough phenotypes / genes to perform WGCNA, your collection needs to contain at least 4 different phenotypes. You provided {{request.form['trait_list'].split(',')|length}} phenotypes as input - </div> - {% else %} - <form action="/wgcna_results" method="post" class="form-horizontal"> - <input type="hidden" name="trait_list" id="trait_list" value= "{{request.form['trait_list']}}"> - <div class="form-group"> - <label for="SoftThresholds"> Soft threshold: </label> - <div class="col-sm-10"> - <input type="text" class="form-inline" name="SoftThresholds" id="SoftThresholds" value="1,2,3,4,5,6,7,8,9"> - </div> - </div> - <div class="form-group"> - <label for="MinModuleSize"> Minimum module size: </label> - <div class="col-sm-10"> - <input type="text" class="form-inline" name="MinModuleSize" id="MinModuleSize" value="30"> - </div> - </div> - <div class="form-group"> - <label for="TOMtype"> TOMtype: </label> - <div class="col-sm-10"> - <input type="text" class="form-inline" name="TOMtype" id="TOMtype" value="unsigned"> - </div> - </div> - <div class="form-group"> - <label for="mergeCutHeight"> mergeCutHeight: </label> - <div class="col-sm-10"> - <input type="text" class="form-inline" name="mergeCutHeight" id="mergeCutHeight" value="0.25"> - </div> - </div> - <div class="form-group"> - <div class="col-sm-10"> - <input type="submit" class="btn btn-primary" value="Run WGCNA using these settings" /> - </div> - </div> - </form> - {% endif %} + {% if request.form['trait_list'].split(",")|length < 4 %} + <div class="alert alert-danger" role="alert"> + <span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span> + <span class="sr-only">Error:</span> + <h2>Too few phenotypes as input</h2> + Please make sure you select enough phenotypes / genes to perform WGCNA. Your collection needs to contain at least 4 different phenotypes. You provided {{request.form['trait_list'].split(',')|length}} phenotypes as input. + </div> + {% else %} + <form action="/wgcna_results" method="post" class="form-horizontal"> + <input type="hidden" name="trait_list" id="trait_list" value= "{{request.form['trait_list']}}"> + <div class="form-group"> + <label for="SoftThresholds"> Soft threshold: </label> + <div class="col-sm-10"> + <input type="text" class="form-inline" name="SoftThresholds" id="SoftThresholds" value="1,2,3,4,5,6,7,8,9"> + </div> + </div> + <div class="form-group"> + <label for="MinModuleSize"> Minimum module size: </label> + <div class="col-sm-10"> + <input type="text" class="form-inline" name="MinModuleSize" id="MinModuleSize" value="30"> + </div> + </div> + <div class="form-group"> + <label for="TOMtype"> TOMtype: </label> + <div class="col-sm-10"> + <input type="text" class="form-inline" name="TOMtype" id="TOMtype" value="unsigned"> + </div> + </div> + <div class="form-group"> + <label for="mergeCutHeight"> mergeCutHeight: </label> + <div class="col-sm-10"> + <input type="text" class="form-inline" name="mergeCutHeight" id="mergeCutHeight" value="0.25"> + </div> + </div> + <div class="form-group"> + <div class="col-sm-10"> + <input type="submit" class="btn btn-primary" value="Run WGCNA using these settings" /> + </div> + </div> + </form> + {% endif %} </div> {% endblock %} |