diff options
| -rwxr-xr-x | bin/genenetwork2 | 1 | ||||
| -rw-r--r-- | wqflask/base/webqtlConfig.py | 1 | ||||
| -rw-r--r-- | wqflask/utility/tools.py | 4 |
3 files changed, 2 insertions, 4 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index f64576d5..7148c022 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -45,6 +45,7 @@ SCRIPT=$(realpath "$0") echo SCRIPT=$SCRIPT +echo GN2_PROFILE=$GN2_PROFILE GN2_BASE_DIR=$(dirname $(dirname "$SCRIPT")) GN2_ID=$(cat /etc/hostname):$(basename $GN2_BASE_DIR) diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py index 1ef2bc26..1e66e957 100644 --- a/wqflask/base/webqtlConfig.py +++ b/wqflask/base/webqtlConfig.py @@ -82,6 +82,7 @@ assert_writable_dir(GENERATED_TEXT_DIR) # Flat file directories GENODIR = flat_files('genotype')+'/' assert_dir(GENODIR) +assert_dir(GENODIR+'bimbam') # for gemma # JSON genotypes are OBSOLETE JSON_GENODIR = flat_files('genotype/json')+'/' diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py index 57f97a81..e3fcd7c7 100644 --- a/wqflask/utility/tools.py +++ b/wqflask/utility/tools.py @@ -278,8 +278,4 @@ if os.environ.get('WQFLASK_OVERRIDES'): logger.debug(OVERRIDES) # assert_file(PHEWAS_FILES+"/auwerx/PheWAS_pval_EMMA_norm.RData") -# assert_dir(get_setting("JS_BIODALLIANCE")) -# assert_file(get_setting("JS_BIODALLIANCE")+"/build/dalliance-all.js") -# assert_file(get_setting("JS_BIODALLIANCE")+"/build/worker-all.js") -# assert_dir(get_setting("JS_TWITTER_POST_FETCHER")) assert_file(JS_TWITTER_POST_FETCHER_PATH+"/js/twitterFetcher_min.js") |