diff options
| -rw-r--r-- | wqflask/base/trait.py | 2 | ||||
| -rw-r--r-- | wqflask/utility/webqtlUtil.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/correlation_matrix/show_corr_matrix.py | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/heatmap/heatmap.py | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/network_graph/network_graph.py | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/search_results.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/snp_browser/snp_browser.py | 6 | ||||
| -rwxr-xr-x | wqflask/wqflask/templates/index_page_orig.html | 41 |
10 files changed, 22 insertions, 36 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index 0689e950..6fecf725 100644 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -4,8 +4,6 @@ import string import resource import codecs -from htmlgen import HTMLgen2 as HT - import redis Redis = redis.StrictRedis() diff --git a/wqflask/utility/webqtlUtil.py b/wqflask/utility/webqtlUtil.py index 83fa90b7..67a476e3 100644 --- a/wqflask/utility/webqtlUtil.py +++ b/wqflask/utility/webqtlUtil.py @@ -30,8 +30,6 @@ import re import math from math import * -from htmlgen import HTMLgen2 as HT - from base import webqtlConfig # NL, 07/27/2010. moved from webqtlForm.py diff --git a/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py b/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py index b9e6f450..21eb1493 100644 --- a/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py +++ b/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py @@ -35,7 +35,6 @@ import resource from pprint import pformat as pf -from htmlgen import HTMLgen2 as HT import reaper from base.trait import GeneralTrait diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index 031c7a16..1aa7945d 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -37,7 +37,6 @@ import numpy from pprint import pformat as pf -from htmlgen import HTMLgen2 as HT import reaper from base import webqtlConfig diff --git a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py index 5a1f464b..09213d1f 100644 --- a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py +++ b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py @@ -41,7 +41,6 @@ import rpy2.robjects as robjects from pprint import pformat as pf -from htmlgen import HTMLgen2 as HT import reaper import redis diff --git a/wqflask/wqflask/heatmap/heatmap.py b/wqflask/wqflask/heatmap/heatmap.py index 1bdf252b..9d33961c 100644 --- a/wqflask/wqflask/heatmap/heatmap.py +++ b/wqflask/wqflask/heatmap/heatmap.py @@ -18,7 +18,6 @@ import numpy as np from pprint import pformat as pf -from htmlgen import HTMLgen2 as HT import reaper from base.trait import GeneralTrait diff --git a/wqflask/wqflask/network_graph/network_graph.py b/wqflask/wqflask/network_graph/network_graph.py index 63273a29..a332db46 100644 --- a/wqflask/wqflask/network_graph/network_graph.py +++ b/wqflask/wqflask/network_graph/network_graph.py @@ -40,7 +40,6 @@ import rpy2.robjects as robjects from pprint import pformat as pf -from htmlgen import HTMLgen2 as HT import reaper from utility.THCell import THCell diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index 4a224de6..2c8e07dd 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -116,7 +116,7 @@ views.py). trait_dict['location'] = this_trait.location_repr trait_dict['mean'] = "N/A" trait_dict['additive'] = "N/A" - if this_trait.mean != "": + if this_trait.mean != "" and this_trait.mean != None: trait_dict['mean'] = '%.3f' % this_trait.mean trait_dict['lrs_score'] = this_trait.LRS_score_repr trait_dict['lrs_location'] = this_trait.LRS_location_repr diff --git a/wqflask/wqflask/snp_browser/snp_browser.py b/wqflask/wqflask/snp_browser/snp_browser.py index 1e28add8..360e6b28 100644 --- a/wqflask/wqflask/snp_browser/snp_browser.py +++ b/wqflask/wqflask/snp_browser/snp_browser.py @@ -2,8 +2,6 @@ from __future__ import absolute_import, print_function, division from flask import Flask, g, url_for -from htmlgen import HTMLgen2 as HT - import string import piddle as pid @@ -639,8 +637,8 @@ class SnpBrowser(object): x_scale = plot_width/(self.end_mb - self.start_mb) - #draw clickable image map - #gifmap = HT.Map + #draw clickable image map at some point + n_click = 80.0 click_step = plot_width/n_click click_mb_step = (self.end_mb - self.start_mb)/n_click diff --git a/wqflask/wqflask/templates/index_page_orig.html b/wqflask/wqflask/templates/index_page_orig.html index e32b1c82..4bf1e85f 100755 --- a/wqflask/wqflask/templates/index_page_orig.html +++ b/wqflask/wqflask/templates/index_page_orig.html @@ -176,24 +176,33 @@ </div> <div style="padding-left:120px" class="col-xs-4" style="width: 600px !important;"> + <section id="affiliates"> + <div class="page-header"> + <h1>Affiliates</h1> + <ul> + <li><a href="http://ucscbrowser.genenetwork.org/">Genome browser</a> at UTHSC</li> + <li><a href="http://galaxy.genenetwork.org/">Galaxy</a> at UTHSC</li> + </ul> + </div> + </section> <section id="websites"> <div class="page-header"> <h1>Github</h1> + <ul> + <li><a href="https://github.com/genenetwork/genenetwork2">GN2 Source Code</a></li> + <li><a href="https://github.com/genenetwork/gn-docs/wiki">GN2 Document Wiki</a></li> + <li><a href="https://github.com/genenetwork/sysmaintenance">System Maintenance Code</a></li> + <li><a href="https://github.com/genenetwork/genenetwork">GN1 Source Code</a></li> + </ul> </div> - <ul> - <li><a href="https://github.com/genenetwork/genenetwork2">GN2 Source Code</a></li> - <li><a href="https://github.com/genenetwork/gn-docs/wiki">GN2 Document Wiki</a></li> - <li><a href="https://github.com/genenetwork/sysmaintenance">System Maintenance Code</a></li> - <li><a href="https://github.com/genenetwork/genenetwork">GN1 Source Code</a></li> - </ul> </section> <section id="news-section"> <div class="page-header"> <h1>News</h1> - </div> - <div id="tweets"></div> - <div align="right"> - <a href="https://twitter.com/GeneNetwork2">more news items...</a> + <div id="tweets"></div> + <div align="right"> + <a href="https://twitter.com/GeneNetwork2">more news items...</a> + </div> </div> <!-- <section id="tour-info"> @@ -240,18 +249,6 @@ <li><a href="http://ec2.genenetwork.org/">Amazon Cloud (EC2)</a></li> </ul> - <h3>Affiliates</h3> - <ul> - <li><a href="http://ucscbrowser.genenetwork.org/">Genome - browser</a> at UTHSC</li> - - <li><a href="http://galaxy.genenetwork.org/">Galaxy</a> at - UTHSC</li> - - </ul> - - - </section> <!--<section id="getting-started"> |