diff options
| -rw-r--r-- | doc/Architecture.org | 5 | ||||
| -rw-r--r-- | wqflask/maintenance/README.md | 4 | ||||
| -rw-r--r-- | wqflask/maintenance/__init__.py | 0 |
3 files changed, 7 insertions, 2 deletions
diff --git a/doc/Architecture.org b/doc/Architecture.org index 9a561568..cac40939 100644 --- a/doc/Architecture.org +++ b/doc/Architecture.org @@ -56,7 +56,6 @@ from the database. To get the menu data in YAML you can do something like see [[https://github.com/genenetwork/gn_server/doc/API.md][GnServer REST API]] documentation. * Database - ** Phenotypes Phenotypes are stored in the SQL database. For what happens at the @@ -67,7 +66,7 @@ see the installation [[./README.org][instructions]]. Genotypes are stored in genotype files. These are part of the GNU Guix distribution, see the installation [[./README.org][instructions]]. Genotype files are -currently in GN1 format, and will be aligned with the R/qtl2 format. Now it is +currently in GN1 format, and will be aligned with the [[http://kbroman.org/qtl2/pages/sampledata.html][R/qtl2 formats]]. Now it is for BXD.geno: #+begin_src js @@ -93,3 +92,5 @@ B B B B B B D B D B B D B B H H B D B B H H B B D D D D D B B H B B B B D B D B D D D D D H B D D B D B B D D B D D B B B B B B U D etc #+end_src + +and, for example, in the method run_rqtl_geno this file gets loaded. diff --git a/wqflask/maintenance/README.md b/wqflask/maintenance/README.md new file mode 100644 index 00000000..873eaa32 --- /dev/null +++ b/wqflask/maintenance/README.md @@ -0,0 +1,4 @@ +Maintenance files have been moved into a separate repository named +*gn_extra*. See https://github.com/genenetwork/gn_extra + + diff --git a/wqflask/maintenance/__init__.py b/wqflask/maintenance/__init__.py deleted file mode 100644 index e69de29b..00000000 --- a/wqflask/maintenance/__init__.py +++ /dev/null |