diff options
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index 8adca6e5..3bf9fdd5 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -183,8 +183,12 @@ def gen_covariates_file(this_dataset, covariates, samples): def parse_loco_output(this_dataset, gwa_output_filename, loco="True"): + output_filename = f"{TEMPDIR}/gn2/{gwa_output_filename}.json" + if os.stat(output_filename).st_size == 0: + return {} + output_filelist = [] - with open(f"{TEMPDIR}/gn2/{gwa_output_filename}.json") as data_file: + with open(output_filename) as data_file: data = json.load(data_file) files = data['files'] |