diff options
| -rw-r--r-- | wqflask/wqflask/templates/dataset.html | 114 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/show_trait_details.html | 4 | ||||
| -rw-r--r-- | wqflask/wqflask/views.py | 23 |
3 files changed, 141 insertions, 0 deletions
diff --git a/wqflask/wqflask/templates/dataset.html b/wqflask/wqflask/templates/dataset.html new file mode 100644 index 00000000..402e4aa1 --- /dev/null +++ b/wqflask/wqflask/templates/dataset.html @@ -0,0 +1,114 @@ +{% extends "base.html" %} + +{% block css %} +<style type="text/css"> + .page-header { + text-underline-offset: 0.9em; + padding: 1em; + } + .panel-about { + background: #F8F8F8; + max-width: 35em; + margin: 10px; + } + .panel-metadata { + display: inline-block; + width: fit-content; + height: fit-content; + padding: 0; + } + + .panel-metadata dt { + color: green; + } + + .panel-metadata dt::after { + content: ":"; + } + +</style> +{% endblock %} + +{% block title %}Dataset: {{ name }}{% endblock %} + +{% block content %} + +<header class="page-header text-justify"> + <h1><u> + {% if metadata.title %} + {{ metadata.title }} + {% else %} + {{ name }} + {% endif %} + </u></h1> +</header> + +<div class="container"> + {% if metadata == {} %} + <p class="lead">We appreciate your interest, but unfortunately, we don't have any additional information available for: <strong>{{ name }}</strong>. If you have any other questions or need assistance with something else, please feel free to reach out to us.</p> + {% else %} + <div class="panel-about panel panel-info panel-metadata text-muted{{ float_p }}"> + <div class="panel-heading"><strong><span class="glyphicon glyphicon-info-sign aria-hidden=true"></span> Details</strong> </div> + <div class="panel-body"> + <dl class="dl-horizontal"> + {% if metadata.name %} <dt>Name</dt> <dd>{{ metadata.name}}</dd> {% endif %} + {% if metadata.specifics %} <dt>Specifics</dt> <dd>{{ metadata.specifics}}</dd> {% endif %} + {% if metadata.created %} <dt>Created</dt> <dd>{{ metadata.created }}</dd> {% endif %} + {% if metadata.accessionId %} <dt>Accession Id</dt> <dd>{{ metadata.accessionId }}</dd> {% endif %} + {% if metadata.geoSeries %} <dt>Geo Series</dt> <dd>{{ metadata.geoSeries }}</dd> {% endif %} + {% if metadata.normalization %} <dt>Normalization</dt> <dd>{{ metadata.normalization }}</dd> {% endif %} + {% if metadata.datasetGroup %} <dt>Group</dt> <dd>{{ metadata.datasetGroup }}</dd> {% endif %} + {% if metadata.investigatorName %} + <dt>Investigator</dt> + <dd> + <a href="{{ metadata.investigatorWebUrl }}" target="_blank">{{ metadata.investigatorName }}</a> + </dd> + {% endif %} + {% if metadata.contributors %} <dt>Contributors</dt> <dd>{{ metadata.contributors|safe }}</dd> {% endif %} + {% if metadata.citation|trim %} <dt>Citation</dt> <dd>{{ metadata.citation|safe}}</dd> {% endif %} + {% if metadata.acknowledgment|trim %} <dt>Acknowledgment</dt> <dd>{{ metadata.acknowledgment|safe}}</dd> {% endif %} + </dl> + </div> + </div> + + <div class="container"> + {% if metadata.summary %} + <h3><strong>Summary</strong></h3> + <div>{{ metadata.summary|safe }}</div> + {% endif %} + + {% if metadata.experimentDesign %} + <h3><strong>Experiment Design</strong></h3> + <div>{{ metadata.experimentDesign|safe }}</div> + {% endif %} + + {% if metadata.aboutCases %} + <h3><strong>About Cases</strong></h3> + <div>{{ metadata.aboutCases|safe }}</div> + {% endif %} + + {% if metadata.aboutTissue %} + <h3><strong>About Tissue</strong></h3> + <div>{{ metadata.aboutTissue|safe }}</div> + {% endif %} + + {% if metadata.aboutPlatform %} + <h3><strong>About Platform</strong></h3> + <div>{{ metadata.aboutPlatform|safe }}</div> + {% endif %} + + {% if metadata.aboutDataProcessing %} + <h3><strong>About Data Processing</strong></h3> + <div>{{ metadata.aboutDataProcessing|safe }}</div> + {% endif %} + + {% if metadata.notes %} + <h3><strong>GeneNetwork Notes</strong></h3> + <div>{{ metadata.notes|safe }}</div> + {% endif %} + </div> + {% endif %} + +</div> + +{% endblock %} diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html index cd8671bb..c745fce8 100644 --- a/wqflask/wqflask/templates/show_trait_details.html +++ b/wqflask/wqflask/templates/show_trait_details.html @@ -62,6 +62,10 @@ <a href="http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName={{ dataset.name }}" target="_blank"> {{ dataset.fullname }} </a> + <br/> + <a href="{{ url_for('get_dataset', name=dataset.name) }}" target="_blank"> + GN2 Link: {{ dataset.fullname }} + </a> </td> </tr> {% if this_trait.probe_set_specificity %} diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 243c79b2..895ad0cb 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -1095,3 +1095,26 @@ def display_generif_page(symbol): symbol=symbol, entries=entries ) + + +@app.route("/dataset/<name>", methods=('GET',)) +def get_dataset(name): + metadata = requests.get( + urljoin( + GN3_LOCAL_URL, + f"/api/metadata/dataset/{name}") + ).json() + float_p = "" + if any([metadata.get("summary"), + metadata.get("experimentDesign"), + metadata.get("aboutCases"), + metadata.get("aboutTissue"), + metadata.get("aboutPlatform"), + metadata.get("aboutDataProcesing"), metadata.get("notes")]): + float_p = " pull-right" + return render_template( + "dataset.html", + name=name, + metadata=metadata, + float_p=float_p + ) |