diff options
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index 5b34e837..3d3f26f3 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -214,7 +214,7 @@ def parse_loco_output(this_dataset, gwa_output_filename): else: marker = {} marker['name'] = line.split("\t")[1] - if line.split("\t")[0] != "X" and line.split("\t")[0] != "X/Y": + if line.split("\t")[0] != "X" and line.split("\t")[0] != "X/Y" and line.split("\t")[0] != "Y" and line.split("\t")[0] != "M": if "chr" in line.split("\t")[0]: marker['chr'] = int(line.split("\t")[0][3:]) else: |