diff options
| -rw-r--r-- | wqflask/wqflask/wgcna/wgcna_analysis.py | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/wqflask/wqflask/wgcna/wgcna_analysis.py b/wqflask/wqflask/wgcna/wgcna_analysis.py index 37a37313..84cdc241 100644 --- a/wqflask/wqflask/wgcna/wgcna_analysis.py +++ b/wqflask/wqflask/wgcna/wgcna_analysis.py @@ -54,6 +54,12 @@ class WGCNA(object): self.results[t] = strains print("Retrieved phenotype data from database") + # TODO: + # Load data into R + # Calculate a good soft threshold + # Create block wise modules using WGCNA + # How many modules and how many gene per module ? + # Show the iconic WCGNA plot of the modules in the hanging tree def process_results(self, results): print("Processing WGCNA output") |