2 files changed, 40 insertions, 28 deletions

diff --git a/wqflask/wqflask/static/new/javascript/marker_regression.coffee b/wqflask/wqflask/static/new/javascript/marker_regression.coffee
index 7ffa0267..07a10119 100644
--- a/wqflask/wqflask/static/new/javascript/marker_regression.coffee
+++ b/wqflask/wqflask/static/new/javascript/marker_regression.coffee
@@ -3,8 +3,12 @@ $ ->
         return a - b
 
 
-    
-        process_lrs_array = ->
+    class Permutation_Histogram
+        constructor: ->
+            @process_data()
+            @display_graph()
+            
+        process_data: ->
             # Put the data in a format needed for graphing 
             # The permutation count for a particular integer range (10-11 or 12-13 for example)
             # will be on the y-axis; LRS values will be on the x-axis
@@ -27,21 +31,21 @@ $ ->
     
             # Now that we have the ordered keys above
             # We can build an array of arrays that jqPlot will use
-            bars_ordered = []
+            @bars_ordered = []
             for key in keys
-                bars_ordered.push([parseInt(key), bars[key]])
+                @bars_ordered.push([parseInt(key), bars[key]])
     
             console.log("bars is:", bars)
             console.log("keys are:", keys)
-            console.log("bars_ordered are:", bars_ordered)
-            return bars_ordered
+            console.log("bars_ordered are:", @bars_ordered)
+            #return bars_ordered
     
-        display_permutation_histogram = (bars_ordered) ->
+        display_graph: ->
             # Figure out the largest key, so we can make sure the x axis max is one larger later on
-            max_lrs = bars_ordered[bars_ordered.length-1][0]
-            console.log("max_key is:", max_lrs)
+            #max_lrs = bars_ordered[bars_ordered.length-1][0]
+            #console.log("max_key is:", max_lrs)
         
-            $.jqplot('permutation_histogram',  [bars_ordered],
+            $.jqplot('permutation_histogram',  [@bars_ordered],
                 title: 'Permutation Histogram'     
                 seriesDefaults:
                     renderer:$.jqplot.BarRenderer
@@ -74,5 +78,7 @@ $ ->
 
 
 
-    bars_ordered = process_lrs_array()
-    display_permutation_histogram(bars_ordered)
\ No newline at end of file
+    #bars_ordered = process_lrs_array()
+    #display_permutation_histogram(bars_ordered)
+    
+    new Permutation_Histogram
\ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/marker_regression.js b/wqflask/wqflask/static/new/javascript/marker_regression.js
index 5d429ddc..26f0dba4 100644
--- a/wqflask/wqflask/static/new/javascript/marker_regression.js
+++ b/wqflask/wqflask/static/new/javascript/marker_regression.js
@@ -2,12 +2,19 @@
 (function() {
 
   $(function() {
-    var bars_ordered, sort_number;
+    var Permutation_Histogram, sort_number;
     sort_number = function(a, b) {
-      var display_permutation_histogram, process_lrs_array;
       return a - b;
-      process_lrs_array = function() {
-        var bars, bars_ordered, floored, key, keys, lrs, lrs_array, _i, _j, _len, _len1;
+    };
+    Permutation_Histogram = (function() {
+
+      function Permutation_Histogram() {
+        this.process_data();
+        this.display_graph();
+      }
+
+      Permutation_Histogram.prototype.process_data = function() {
+        var bars, floored, key, keys, lrs, lrs_array, _i, _j, _len, _len1;
         lrs_array = js_data.lrs_array;
         bars = {};
         for (_i = 0, _len = lrs_array.length; _i < _len; _i++) {
@@ -23,21 +30,18 @@
           keys.push(key);
         }
         keys.sort(sort_number);
-        bars_ordered = [];
+        this.bars_ordered = [];
         for (_j = 0, _len1 = keys.length; _j < _len1; _j++) {
           key = keys[_j];
-          bars_ordered.push([parseInt(key), bars[key]]);
+          this.bars_ordered.push([parseInt(key), bars[key]]);
         }
         console.log("bars is:", bars);
         console.log("keys are:", keys);
-        console.log("bars_ordered are:", bars_ordered);
-        return bars_ordered;
+        return console.log("bars_ordered are:", this.bars_ordered);
       };
-      return display_permutation_histogram = function(bars_ordered) {
-        var max_lrs;
-        max_lrs = bars_ordered[bars_ordered.length - 1][0];
-        console.log("max_key is:", max_lrs);
-        return $.jqplot('permutation_histogram', [bars_ordered], {
+
+      Permutation_Histogram.prototype.display_graph = function() {
+        return $.jqplot('permutation_histogram', [this.bars_ordered], {
           title: 'Permutation Histogram',
           seriesDefaults: {
             renderer: $.jqplot.BarRenderer,
@@ -64,9 +68,11 @@
           }
         });
       };
-    };
-    bars_ordered = process_lrs_array();
-    return display_permutation_histogram(bars_ordered);
+
+      return Permutation_Histogram;
+
+    })();
+    return new Permutation_Histogram;
   });
 
 }).call(this);